Wall clock time and date at job start Tue Mar 31 2020 13:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99974 * 2 1 4 4 H 1.48494 * 109.47340 * 269.99624 * 3 2 1 5 5 H 1.48504 * 109.47031 * 29.99970 * 3 2 1 6 6 H 1.48507 * 109.46910 * 149.99321 * 3 2 1 7 7 C 1.37881 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00127 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99972 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46842 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46819 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47310 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47334 * 180.02562 * 12 11 10 14 14 N 1.30954 * 126.42722 * 90.25074 * 13 12 11 15 15 C 1.35283 * 105.57979 * 180.12040 * 14 13 12 16 16 C 1.48184 * 126.42723 * 179.90364 * 15 14 13 17 17 C 1.38387 * 120.36647 * 359.70915 * 16 15 14 18 18 C 1.39035 * 120.56954 * 179.97438 * 17 16 15 19 19 C 1.36188 * 121.21879 * 359.97438 * 18 17 16 20 20 C 1.40610 * 120.14679 * 0.02562 * 19 18 17 21 21 N 1.33714 * 120.97159 * 180.02562 * 20 19 18 22 22 C 1.31088 * 121.33393 * 179.97438 * 21 20 19 23 23 C 1.39304 * 121.72535 * 359.97438 * 22 21 20 24 24 C 1.36673 * 119.88204 * 359.97438 * 23 22 21 25 25 C 1.40495 * 118.17233 * 359.97438 * 24 23 22 26 26 N 1.30859 * 107.14604 * 359.64415 * 15 14 13 27 27 O 1.21289 * 110.07740 * 0.22253 * 26 15 14 28 28 H 0.96996 * 120.00220 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47325 * 59.99763 * 9 7 2 30 30 H 1.09001 * 109.46926 * 299.99824 * 9 7 2 31 31 H 1.08997 * 109.47071 * 60.00331 * 10 9 7 32 32 H 1.08992 * 109.47326 * 299.99533 * 10 9 7 33 33 H 1.09005 * 109.47508 * 59.99835 * 11 10 9 34 34 H 1.08999 * 109.47591 * 299.99886 * 11 10 9 35 35 H 1.08993 * 109.46908 * 59.99831 * 12 11 10 36 36 H 1.09001 * 109.46731 * 299.99842 * 12 11 10 37 37 H 1.07994 * 119.71366 * 0.25829 * 17 16 15 38 38 H 1.08003 * 119.38937 * 180.02562 * 18 17 16 39 39 H 1.07996 * 119.92556 * 180.02562 * 19 18 17 40 40 H 1.08004 * 119.14136 * 179.97438 * 22 21 20 41 41 H 1.07998 * 120.05930 * 180.02562 * 23 22 21 42 42 H 1.08006 * 120.91177 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6365 0.0009 12 6 6.0616 -4.0790 0.0002 13 6 7.5686 -4.0790 0.0008 14 7 8.3458 -4.0843 1.0547 15 6 9.6102 -4.0791 0.5738 16 6 10.8565 -4.0800 1.3754 17 6 10.7990 -4.0806 2.7581 18 6 11.9657 -4.0820 3.5143 19 6 13.1915 -4.0834 2.9209 20 6 13.2974 -4.0828 1.5188 21 7 14.4924 -4.0846 0.9189 22 6 14.5993 -4.0846 -0.3876 23 6 13.4782 -4.0833 -1.2143 24 6 12.2268 -4.0824 -0.6647 25 6 12.1176 -4.0835 0.7360 26 7 9.5263 -4.0788 -0.7321 27 8 8.3627 -4.0788 -1.0745 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8752 -0.6804 -0.8889 31 1 3.6585 -3.1501 -0.8893 32 1 3.6579 -3.1505 0.8907 33 1 5.9149 -2.1227 0.8909 34 1 5.9149 -2.1227 -0.8890 35 1 5.6982 -4.5923 -0.8900 36 1 5.6983 -4.5933 0.8899 37 1 9.8397 -4.0847 3.2539 38 1 11.8986 -4.0829 4.5922 39 1 14.0843 -4.0848 3.5286 40 1 15.5824 -4.0857 -0.8348 41 1 13.5975 -4.0837 -2.2877 42 1 11.3462 -4.0818 -1.2899 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589153364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:35 Heat of formation + Delta-G solvation = 90.113649 kcal Electronic energy + Delta-G solvation = -24940.707708 eV Core-core repulsion = 21273.696655 eV Total energy + Delta-G solvation = -3667.011053 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.68960 -41.90071 -38.43026 -37.47312 -36.75732 -35.39935 -34.55686 -33.38058 -31.77082 -31.31909 -31.02890 -27.68803 -26.15568 -25.25970 -24.90657 -24.10022 -23.21457 -21.79322 -21.75234 -19.41947 -19.25206 -18.79936 -18.70089 -18.14900 -17.59152 -16.48238 -16.32661 -16.15267 -15.69169 -15.56897 -15.54787 -15.34911 -14.71638 -14.55705 -14.19458 -14.06197 -14.04578 -13.64809 -13.61085 -13.34440 -12.93967 -12.85436 -12.60340 -12.53746 -12.39664 -12.18406 -12.06416 -11.85882 -11.74260 -11.48795 -11.32790 -11.24960 -10.96176 -10.73455 -10.65124 -9.91199 -9.29918 -8.26875 -6.29819 -1.03323 -0.29656 0.01982 0.57765 1.31901 1.36639 1.38528 1.49929 1.69060 1.92495 2.27458 2.37591 2.76623 2.98900 3.08951 3.24461 3.55586 3.65298 3.70520 3.83043 4.00058 4.03717 4.07963 4.11355 4.20337 4.37624 4.42312 4.56877 4.60938 4.66703 4.74991 4.79754 4.84636 4.85546 4.97113 5.04554 5.13145 5.18318 5.22928 5.25194 5.30145 5.44768 5.63012 5.68946 5.70078 5.71657 6.32727 6.77288 6.79442 6.97338 7.34845 8.89729 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.002084 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.608631 B =13431.268185 C =13589.265992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.000 4.000 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.248 1.248 7 C -0.529 4.529 8 H 0.037 0.963 9 C -0.018 4.018 10 C -0.093 4.093 11 C -0.108 4.108 12 C -0.023 4.023 13 C 0.211 3.789 14 N -0.492 5.492 15 C 0.207 3.793 16 C -0.036 4.036 17 C -0.059 4.059 18 C -0.098 4.098 19 C -0.073 4.073 20 C 0.101 3.899 21 N -0.491 5.491 22 C 0.130 3.870 23 C -0.162 4.162 24 C -0.091 4.091 25 C -0.098 4.098 26 N -0.395 5.395 27 O 0.074 5.926 28 H 0.265 0.735 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.149 0.851 38 H 0.176 0.824 39 H 0.162 0.838 40 H 0.198 0.802 41 H 0.169 0.831 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.093 -11.095 1.972 33.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.172 1.172 7 C -0.567 4.567 8 H 0.055 0.945 9 C -0.055 4.055 10 C -0.131 4.131 11 C -0.146 4.146 12 C -0.062 4.062 13 C -0.008 4.008 14 N -0.225 5.225 15 C -0.062 4.062 16 C -0.039 4.039 17 C -0.079 4.079 18 C -0.117 4.117 19 C -0.093 4.093 20 C -0.019 4.019 21 N -0.200 5.200 22 C -0.042 4.042 23 C -0.182 4.182 24 C -0.117 4.117 25 C -0.101 4.101 26 N -0.105 5.105 27 O 0.018 5.982 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.166 0.834 38 H 0.194 0.806 39 H 0.179 0.821 40 H 0.214 0.786 41 H 0.187 0.813 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 32.395 -11.009 2.481 34.304 hybrid contribution -1.389 0.867 -0.800 1.822 sum 31.006 -10.142 1.681 32.666 Atomic orbital electron populations 1.70066 1.08235 1.27996 1.53039 1.26027 0.95599 1.03496 0.94476 0.85689 0.79477 0.78560 0.79089 1.19280 1.21261 1.17159 1.21572 0.92351 0.93099 1.49658 0.94498 1.19588 0.93694 0.95901 0.96350 1.21300 0.92955 0.96864 1.01982 1.21555 0.95992 0.94353 1.02745 1.20568 0.77445 0.99888 1.08286 1.29338 0.99290 0.92608 0.79589 1.72022 0.99479 1.21778 1.29262 1.24045 0.93389 1.01029 0.87717 1.17482 0.86297 1.07003 0.93078 1.21598 1.01084 0.93974 0.91292 1.21227 0.90158 0.97915 1.02421 1.21307 0.99921 0.96565 0.91465 1.19128 0.87693 0.99844 0.95265 1.68144 1.25065 1.13476 1.13266 1.23652 1.00789 0.91417 0.88386 1.22342 0.92233 1.00050 1.03534 1.22280 1.00589 0.95003 0.93871 1.18825 0.93236 1.02839 0.95189 1.74694 0.97841 1.22967 1.15028 1.85263 1.11229 1.65581 1.36168 0.92651 0.96609 0.96463 0.91770 0.92226 0.92020 0.91268 0.85150 0.85575 0.83367 0.80636 0.82070 0.78559 0.81312 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 2 C 0.00 0.02 5.47 84.66 0.46 0.49 16 3 Si 0.95 44.11 27.47 68.60 1.88 46.00 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 7 C -0.53 -29.74 9.66 25.60 0.25 -29.49 16 8 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 9 C -0.02 -0.79 4.04 29.85 0.12 -0.67 16 10 C -0.09 -3.11 5.15 30.59 0.16 -2.95 16 11 C -0.11 -2.72 5.20 30.60 0.16 -2.56 16 12 C -0.02 -0.44 5.84 29.85 0.17 -0.27 16 13 C 0.21 4.90 7.75 88.36 0.68 5.59 16 14 N -0.49 -12.88 11.25 -302.42 -3.40 -16.28 16 15 C 0.21 5.55 7.71 137.18 1.06 6.60 16 16 C -0.04 -0.87 5.91 -19.82 -0.12 -0.99 16 17 C -0.06 -1.12 9.68 22.50 0.22 -0.90 16 18 C -0.10 -1.35 9.92 21.98 0.22 -1.13 16 19 C -0.07 -1.18 9.96 22.37 0.22 -0.96 16 20 C 0.10 2.19 6.60 40.26 0.27 2.45 16 21 N -0.49 -9.95 10.34 -188.70 -1.95 -11.90 16 22 C 0.13 1.95 11.15 85.06 0.95 2.90 16 23 C -0.16 -2.52 10.03 22.16 0.22 -2.30 16 24 C -0.09 -2.00 9.40 22.45 0.21 -1.79 16 25 C -0.10 -2.32 5.76 -21.13 -0.12 -2.44 16 26 N -0.39 -10.50 8.93 -59.00 -0.53 -11.03 16 27 O 0.07 1.83 11.29 74.55 0.84 2.67 16 28 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.02 0.69 7.20 -2.39 -0.02 0.68 16 30 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.15 2.59 7.86 -2.91 -0.02 2.57 16 38 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 39 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 40 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 42 H 0.15 3.56 4.96 -2.91 -0.01 3.55 16 Total: -1.00 -73.92 358.19 3.26 -70.65 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 0.99 Total: 7.49 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 5.13 Total: -28.43 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -5.58 Total: -98.38 kcal Atomic # 8 Polarization: 1.83 SS G_CDS: 0.84 Total: 2.67 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Total: -73.92 3.26 -70.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589153364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.768 kcal (2) G-P(sol) polarization free energy of solvation -73.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds