Wall clock time and date at job start Tue Mar 31 2020 14:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 115.56137 * 2 1 4 4 C 1.53076 * 117.51217 * 214.30459 * 2 1 3 5 5 C 1.52998 * 117.49903 * 145.69187 * 2 1 3 6 6 C 1.47199 * 117.49991 * 215.00178 * 5 2 1 7 7 N 3.58147 * 145.26608 * 105.13024 * 2 1 3 8 8 N 1.46498 * 117.49830 * 0.02562 * 5 2 1 9 9 C 1.34780 * 119.99904 * 148.41720 * 8 5 2 10 10 O 1.21662 * 120.00143 * 5.51450 * 9 8 5 11 11 C 1.46890 * 119.99822 * 185.51154 * 9 8 5 12 12 C 1.36128 * 125.43521 * 173.14946 * 11 9 8 13 13 C 1.41702 * 107.74878 * 179.97438 * 12 11 9 14 14 C 1.40014 * 133.34747 * 179.97438 * 13 12 11 15 15 C 1.36585 * 119.82988 * 180.02562 * 14 13 12 16 16 C 1.38850 * 120.59679 * 0.02562 * 15 14 13 17 17 C 1.37848 * 120.63810 * 359.97438 * 16 15 14 18 18 C 1.39089 * 119.81215 * 0.02562 * 17 16 15 19 19 N 1.37831 * 133.16628 * 179.68105 * 18 17 16 20 20 C 1.36893 * 125.61783 * 0.02562 * 19 18 17 21 21 H 1.08001 * 119.99543 * 131.78967 * 20 19 18 22 22 C 1.39006 * 120.00398 * 311.79040 * 20 19 18 23 23 N 1.31352 * 120.00183 * 165.39253 * 22 20 19 24 24 Si 1.86803 * 119.99802 * 345.39418 * 22 20 19 25 25 H 1.48498 * 109.47077 * 94.68584 * 24 22 20 26 26 H 1.48494 * 109.47058 * 214.68694 * 24 22 20 27 27 H 1.48500 * 109.47046 * 334.68761 * 24 22 20 28 28 H 1.08996 * 109.46576 * 279.62842 * 1 2 3 29 29 H 1.09003 * 109.46782 * 39.62857 * 1 2 3 30 30 H 1.09003 * 109.46756 * 159.63152 * 1 2 3 31 31 H 1.08996 * 109.47298 * 205.69210 * 3 2 1 32 32 H 1.09000 * 109.47172 * 325.69234 * 3 2 1 33 33 H 1.09002 * 109.46985 * 85.68691 * 3 2 1 34 34 H 1.08996 * 117.49611 * 145.03539 * 4 2 1 35 35 H 1.09002 * 117.51342 * 359.97438 * 4 2 1 36 36 H 0.96997 * 120.00284 * 328.42154 * 8 5 2 37 37 H 1.07998 * 126.12329 * 359.97260 * 12 11 9 38 38 H 1.07998 * 120.09029 * 359.97438 * 14 13 12 39 39 H 1.07998 * 119.70336 * 179.97438 * 15 14 13 40 40 H 1.07997 * 119.68530 * 179.97438 * 16 15 14 41 41 H 1.07996 * 120.09526 * 180.02562 * 17 16 15 42 42 H 0.97001 * 119.99867 * 174.99902 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2372 -1.1215 -0.7652 5 6 2.2365 -1.1210 0.7649 6 6 3.4990 -0.7890 1.4450 7 7 4.4733 -0.5326 1.9699 8 7 1.3962 -2.1126 1.4408 9 6 1.8244 -3.3841 1.5684 10 8 2.9480 -3.6862 1.2129 11 6 0.9344 -4.4053 2.1366 12 6 1.1996 -5.7392 2.1952 13 6 0.0933 -6.3728 2.8137 14 6 -0.1944 -7.7045 3.1366 15 6 -1.3765 -8.0156 3.7461 16 6 -2.2983 -7.0224 4.0490 17 6 -2.0376 -5.7043 3.7410 18 6 -0.8406 -5.3630 3.1202 19 7 -0.3081 -4.1658 2.6925 20 6 -0.9096 -2.9411 2.8026 21 1 -0.3563 -2.1012 3.1962 22 6 -2.2325 -2.7784 2.4080 23 7 -2.8985 -1.7054 2.7693 24 14 -3.0633 -4.0858 1.3639 25 1 -3.8053 -5.0242 2.2437 26 1 -4.0099 -3.4382 0.4207 27 1 -2.0350 -4.8342 0.5974 28 1 -0.3632 0.1719 1.0132 29 1 -0.3633 0.7915 -0.6555 30 1 -0.3633 -0.9635 -0.3577 31 1 3.1824 1.3085 -0.4455 32 1 1.5812 2.0743 -0.5792 33 1 2.2773 1.7413 1.0248 34 1 3.1724 -0.8756 -1.2681 35 1 1.6124 -1.8595 -1.2682 36 1 0.5316 -1.8540 1.7965 37 1 2.0932 -6.2271 1.8348 38 1 0.5160 -8.4838 2.9036 39 1 -1.5965 -9.0435 3.9938 40 1 -3.2286 -7.2850 4.5307 41 1 -2.7606 -4.9389 3.9810 42 1 -3.7967 -1.5565 2.4348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589812139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:59 Heat of formation + Delta-G solvation = 84.556862 kcal Electronic energy + Delta-G solvation = -27378.786904 eV Core-core repulsion = 23711.534890 eV Total energy + Delta-G solvation = -3667.252013 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.98028 -39.84761 -37.86492 -36.27543 -35.67960 -33.86158 -32.99182 -31.49785 -29.61168 -29.09313 -28.26105 -27.52220 -25.07175 -24.42629 -22.74077 -21.26701 -20.59790 -20.00589 -19.16607 -18.61262 -17.48852 -16.69405 -15.98594 -15.58221 -15.17718 -14.70231 -14.53250 -14.25770 -14.03851 -13.87292 -13.63652 -13.43027 -13.28297 -13.17228 -13.04660 -12.72128 -12.57447 -12.40104 -12.30135 -12.21836 -12.14769 -11.81543 -11.52243 -11.25560 -11.11483 -11.07294 -10.60584 -10.42716 -10.36972 -10.05872 -10.01921 -9.57622 -9.51011 -8.91992 -8.82059 -7.47678 -7.11606 -7.05380 -4.90174 1.46998 2.37225 2.60016 2.69846 2.73478 2.91906 3.02304 3.11384 3.42299 3.75906 3.83272 3.85771 3.98226 4.05871 4.43428 4.59606 4.64503 4.77571 4.93939 5.10003 5.44074 5.55061 5.59141 5.61259 5.67199 5.74369 5.80371 5.87419 5.90656 5.95100 6.08141 6.12784 6.13845 6.30511 6.40228 6.48857 6.64705 6.72123 6.76282 7.04500 7.13162 7.23780 7.40898 7.51395 7.56787 7.70180 7.92424 8.01992 8.44380 8.68679 8.87973 9.92860 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.005175 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.472866 B = 5409.802757 C = 6693.204514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.085 4.085 3 C -0.121 4.121 4 C -0.139 4.139 5 C 0.180 3.820 6 C 0.250 3.750 7 N -0.425 5.425 8 N -0.688 5.688 9 C 0.599 3.401 10 O -0.540 6.540 11 C -0.008 4.008 12 C -0.153 4.153 13 C -0.126 4.126 14 C -0.074 4.074 15 C -0.160 4.160 16 C -0.125 4.125 17 C -0.106 4.106 18 C 0.071 3.929 19 N -0.281 5.281 20 C -0.377 4.377 21 H 0.121 0.879 22 C 0.092 3.908 23 N -0.821 5.821 24 Si 0.869 3.131 25 H -0.248 1.248 26 H -0.279 1.279 27 H -0.252 1.252 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.429 0.571 37 H 0.140 0.860 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 0.815 -5.767 5.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.087 4.087 3 C -0.179 4.179 4 C -0.178 4.178 5 C 0.087 3.913 6 C -0.069 4.069 7 N -0.101 5.101 8 N -0.350 5.350 9 C 0.388 3.612 10 O -0.416 6.416 11 C -0.122 4.122 12 C -0.180 4.180 13 C -0.131 4.131 14 C -0.093 4.093 15 C -0.179 4.179 16 C -0.146 4.146 17 C -0.125 4.125 18 C -0.043 4.043 19 N 0.053 4.947 20 C -0.503 4.503 21 H 0.138 0.862 22 C -0.124 4.124 23 N -0.449 5.449 24 Si 0.693 3.307 25 H -0.172 1.172 26 H -0.205 1.205 27 H -0.176 1.176 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.279 0.721 37 H 0.158 0.842 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.137 0.863 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.266 1.524 -5.130 5.499 hybrid contribution -1.303 -0.522 -0.296 1.434 sum -0.036 1.001 -5.426 5.518 Atomic orbital electron populations 1.21438 0.89686 1.03154 1.03711 1.22112 0.96438 0.90760 0.99368 1.21460 1.00186 0.93439 1.02775 1.23813 1.02939 1.00495 0.90582 1.16956 0.86654 0.96765 0.90917 1.27791 0.93197 0.92534 0.93338 1.81128 1.11342 1.09583 1.08012 1.46165 1.22416 1.06992 1.59467 1.17319 0.85523 0.81217 0.77157 1.90768 1.18977 1.81140 1.50763 1.20110 0.90440 0.94056 1.07619 1.20506 0.99389 0.91003 1.07136 1.18023 0.95577 0.93221 1.06295 1.20198 0.96673 0.93925 0.98513 1.20381 0.95214 0.98394 1.03912 1.20626 0.99371 0.92067 1.02494 1.20174 0.95172 0.96571 1.00628 1.18498 0.96540 0.86419 1.02848 1.40246 1.11754 1.05103 1.37553 1.19188 0.97116 0.86137 1.47883 0.86193 1.25452 0.95436 0.97099 0.94417 1.69679 1.12357 1.26737 1.36134 0.86883 0.80943 0.81591 0.81306 1.17243 1.20548 1.17557 0.90542 0.91174 0.91252 0.92075 0.90720 0.91658 0.87377 0.86542 0.72052 0.84238 0.86990 0.87140 0.86859 0.86334 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 8.81 37.16 0.33 -1.18 16 2 C -0.08 -1.04 2.70 -154.47 -0.42 -1.46 16 3 C -0.12 -1.24 8.86 37.16 0.33 -0.91 16 4 C -0.14 -1.77 9.43 -26.69 -0.25 -2.02 16 5 C 0.18 2.86 2.19 -134.60 -0.29 2.57 16 6 C 0.25 4.46 13.60 -20.76 -0.28 4.17 16 7 N -0.42 -8.15 18.54 42.15 0.78 -7.37 16 8 N -0.69 -12.79 5.06 -51.46 -0.26 -13.06 16 9 C 0.60 12.68 7.65 -12.76 -0.10 12.58 16 10 O -0.54 -12.23 16.33 5.22 0.09 -12.14 16 11 C -0.01 -0.18 6.77 -82.25 -0.56 -0.74 16 12 C -0.15 -3.23 10.55 -39.02 -0.41 -3.64 16 13 C -0.13 -2.64 6.16 -106.89 -0.66 -3.30 16 14 C -0.07 -1.33 10.06 -39.51 -0.40 -1.73 16 15 C -0.16 -2.66 9.97 -39.95 -0.40 -3.06 16 16 C -0.13 -2.23 10.02 -39.50 -0.40 -2.63 16 17 C -0.11 -2.19 7.00 -39.41 -0.28 -2.47 16 18 C 0.07 1.57 5.11 -83.84 -0.43 1.14 16 19 N -0.28 -6.39 2.33 -56.08 -0.13 -6.52 16 20 C -0.38 -8.61 8.00 -15.01 -0.12 -8.73 16 21 H 0.12 2.82 6.78 -52.49 -0.36 2.47 16 22 C 0.09 2.06 5.06 -17.47 -0.09 1.97 16 23 N -0.82 -18.74 13.95 55.50 0.77 -17.96 16 24 Si 0.87 18.39 24.38 -169.99 -4.14 14.24 16 25 H -0.25 -5.14 5.89 56.52 0.33 -4.80 16 26 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 27 H -0.25 -5.73 7.11 56.52 0.40 -5.33 16 28 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 29 H 0.07 0.69 8.01 -51.93 -0.42 0.28 16 30 H 0.07 0.92 7.95 -51.93 -0.41 0.51 16 31 H 0.06 0.60 7.90 -51.93 -0.41 0.19 16 32 H 0.07 0.61 7.99 -51.93 -0.41 0.20 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.11 1.19 8.05 -51.93 -0.42 0.77 16 35 H 0.12 1.45 8.08 -51.93 -0.42 1.03 16 36 H 0.43 8.14 3.95 -40.82 -0.16 7.98 16 37 H 0.14 2.68 8.06 -52.49 -0.42 2.26 16 38 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.12 2.49 6.32 -52.49 -0.33 2.16 16 42 H 0.29 6.13 8.31 -40.82 -0.34 5.79 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -27.15 354.41 -7.05 -34.20 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -5.08 Total: 12.68 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -4.42 Total: -9.42 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 1.16 Total: -44.91 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.14 Total: 14.24 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.15 -7.05 -34.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589812139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.760 kcal (2) G-P(sol) polarization free energy of solvation -27.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds