Wall clock time and date at job start Tue Mar 31 2020 14:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 115.56137 * 2 1 4 4 C 1.53076 * 117.51217 * 214.30459 * 2 1 3 5 5 C 1.52998 * 117.49903 * 145.69187 * 2 1 3 6 6 C 1.47199 * 117.49991 * 215.00178 * 5 2 1 7 7 N 3.58147 * 145.26608 * 105.13024 * 2 1 3 8 8 N 1.46498 * 117.49830 * 0.02562 * 5 2 1 9 9 C 1.34780 * 119.99904 * 148.41720 * 8 5 2 10 10 O 1.21662 * 120.00143 * 5.51450 * 9 8 5 11 11 C 1.46890 * 119.99822 * 185.51154 * 9 8 5 12 12 C 1.36128 * 125.43521 * 173.14946 * 11 9 8 13 13 C 1.41702 * 107.74878 * 179.97438 * 12 11 9 14 14 C 1.40014 * 133.34747 * 179.97438 * 13 12 11 15 15 C 1.36585 * 119.82988 * 180.02562 * 14 13 12 16 16 C 1.38850 * 120.59679 * 0.02562 * 15 14 13 17 17 C 1.37848 * 120.63810 * 359.97438 * 16 15 14 18 18 C 1.39089 * 119.81215 * 0.02562 * 17 16 15 19 19 N 1.37831 * 133.16628 * 179.68105 * 18 17 16 20 20 C 1.36893 * 125.61783 * 0.02562 * 19 18 17 21 21 H 1.08001 * 119.99543 * 131.78967 * 20 19 18 22 22 C 1.39006 * 120.00398 * 311.79040 * 20 19 18 23 23 N 1.31352 * 120.00183 * 165.39253 * 22 20 19 24 24 Si 1.86803 * 119.99802 * 345.39418 * 22 20 19 25 25 H 1.48498 * 109.47077 * 94.68584 * 24 22 20 26 26 H 1.48494 * 109.47058 * 214.68694 * 24 22 20 27 27 H 1.48500 * 109.47046 * 334.68761 * 24 22 20 28 28 H 1.08996 * 109.46576 * 279.62842 * 1 2 3 29 29 H 1.09003 * 109.46782 * 39.62857 * 1 2 3 30 30 H 1.09003 * 109.46756 * 159.63152 * 1 2 3 31 31 H 1.08996 * 109.47298 * 205.69210 * 3 2 1 32 32 H 1.09000 * 109.47172 * 325.69234 * 3 2 1 33 33 H 1.09002 * 109.46985 * 85.68691 * 3 2 1 34 34 H 1.08996 * 117.49611 * 145.03539 * 4 2 1 35 35 H 1.09002 * 117.51342 * 359.97438 * 4 2 1 36 36 H 0.96997 * 120.00284 * 328.42154 * 8 5 2 37 37 H 1.07998 * 126.12329 * 359.97260 * 12 11 9 38 38 H 1.07998 * 120.09029 * 359.97438 * 14 13 12 39 39 H 1.07998 * 119.70336 * 179.97438 * 15 14 13 40 40 H 1.07997 * 119.68530 * 179.97438 * 16 15 14 41 41 H 1.07996 * 120.09526 * 180.02562 * 17 16 15 42 42 H 0.97001 * 119.99867 * 174.99902 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2372 -1.1215 -0.7652 5 6 2.2365 -1.1210 0.7649 6 6 3.4990 -0.7890 1.4450 7 7 4.4733 -0.5326 1.9699 8 7 1.3962 -2.1126 1.4408 9 6 1.8244 -3.3841 1.5684 10 8 2.9480 -3.6862 1.2129 11 6 0.9344 -4.4053 2.1366 12 6 1.1996 -5.7392 2.1952 13 6 0.0933 -6.3728 2.8137 14 6 -0.1944 -7.7045 3.1366 15 6 -1.3765 -8.0156 3.7461 16 6 -2.2983 -7.0224 4.0490 17 6 -2.0376 -5.7043 3.7410 18 6 -0.8406 -5.3630 3.1202 19 7 -0.3081 -4.1658 2.6925 20 6 -0.9096 -2.9411 2.8026 21 1 -0.3563 -2.1012 3.1962 22 6 -2.2325 -2.7784 2.4080 23 7 -2.8985 -1.7054 2.7693 24 14 -3.0633 -4.0858 1.3639 25 1 -3.8053 -5.0242 2.2437 26 1 -4.0099 -3.4382 0.4207 27 1 -2.0350 -4.8342 0.5974 28 1 -0.3632 0.1719 1.0132 29 1 -0.3633 0.7915 -0.6555 30 1 -0.3633 -0.9635 -0.3577 31 1 3.1824 1.3085 -0.4455 32 1 1.5812 2.0743 -0.5792 33 1 2.2773 1.7413 1.0248 34 1 3.1724 -0.8756 -1.2681 35 1 1.6124 -1.8595 -1.2682 36 1 0.5316 -1.8540 1.7965 37 1 2.0932 -6.2271 1.8348 38 1 0.5160 -8.4838 2.9036 39 1 -1.5965 -9.0435 3.9938 40 1 -3.2286 -7.2850 4.5307 41 1 -2.7606 -4.9389 3.9810 42 1 -3.7967 -1.5565 2.4348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589812139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:58 Heat of formation + Delta-G solvation = 70.526241 kcal Electronic energy + Delta-G solvation = -27379.395317 eV Core-core repulsion = 23711.534890 eV Total energy + Delta-G solvation = -3667.860427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.55305 -41.17715 -39.31986 -37.79244 -37.09178 -35.50890 -34.48175 -33.10962 -30.98642 -30.42594 -29.67254 -28.45099 -26.74664 -25.79783 -24.14152 -22.81888 -22.08374 -21.35677 -20.55331 -20.21463 -18.88101 -18.22974 -17.63386 -16.84476 -16.64193 -16.33553 -16.00251 -15.83296 -15.34325 -15.10422 -14.97570 -14.92222 -14.73699 -14.63028 -14.54064 -14.11580 -13.97699 -13.84158 -13.68371 -13.49853 -13.16092 -13.13396 -12.80541 -12.73600 -12.48401 -12.26115 -12.20772 -11.96137 -11.61397 -11.56851 -11.47072 -11.26200 -10.83635 -10.47148 -10.32043 -9.04039 -8.84562 -8.63568 -6.64638 -0.07921 0.88632 1.10001 1.20026 1.29493 1.33262 1.34863 1.39547 2.05477 2.09040 2.26439 2.37738 2.58878 2.65922 2.81411 3.12832 3.47701 3.57861 3.88908 3.98085 4.01594 4.13280 4.28828 4.37004 4.57761 4.65272 4.70213 4.73206 4.77384 4.79279 4.95583 4.97485 4.99805 5.01296 5.10529 5.24087 5.24932 5.31089 5.37876 5.40024 5.66681 5.70572 5.80148 5.95335 6.02165 6.29444 6.37761 6.42722 6.74710 7.08497 7.21012 8.23291 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.005175 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.472866 B = 5409.802757 C = 6693.204514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.058 4.058 3 C -0.121 4.121 4 C -0.123 4.123 5 C 0.137 3.863 6 C 0.262 3.738 7 N -0.458 5.458 8 N -0.681 5.681 9 C 0.595 3.405 10 O -0.563 6.563 11 C -0.034 4.034 12 C -0.156 4.156 13 C -0.145 4.145 14 C -0.075 4.075 15 C -0.152 4.152 16 C -0.110 4.110 17 C -0.140 4.140 18 C 0.049 3.951 19 N -0.296 5.296 20 C -0.381 4.381 21 H 0.102 0.898 22 C 0.077 3.923 23 N -0.844 5.844 24 Si 0.908 3.092 25 H -0.240 1.240 26 H -0.269 1.269 27 H -0.279 1.279 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.427 0.573 37 H 0.153 0.847 38 H 0.144 0.856 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.107 0.893 42 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 -0.502 -6.602 6.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.060 4.060 3 C -0.178 4.178 4 C -0.162 4.162 5 C 0.045 3.955 6 C -0.057 4.057 7 N -0.134 5.134 8 N -0.342 5.342 9 C 0.385 3.615 10 O -0.442 6.442 11 C -0.148 4.148 12 C -0.183 4.183 13 C -0.150 4.150 14 C -0.093 4.093 15 C -0.171 4.171 16 C -0.130 4.130 17 C -0.161 4.161 18 C -0.064 4.064 19 N 0.037 4.963 20 C -0.507 4.507 21 H 0.119 0.881 22 C -0.137 4.137 23 N -0.473 5.473 24 Si 0.731 3.269 25 H -0.164 1.164 26 H -0.195 1.195 27 H -0.204 1.204 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.276 0.724 37 H 0.170 0.830 38 H 0.162 0.838 39 H 0.173 0.827 40 H 0.165 0.835 41 H 0.125 0.875 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.237 0.232 -5.960 5.969 hybrid contribution -0.994 -0.251 0.030 1.025 sum -0.757 -0.019 -5.930 5.978 Atomic orbital electron populations 1.21456 0.89641 1.03602 1.03225 1.22270 0.96328 0.91159 0.96292 1.21537 1.00990 0.92348 1.02924 1.23978 1.03958 1.00373 0.87936 1.17495 0.86713 0.98820 0.92477 1.28155 0.93231 0.91594 0.92676 1.81114 1.12490 1.10944 1.08897 1.46054 1.22418 1.06742 1.58949 1.17352 0.85188 0.81958 0.77045 1.90730 1.19686 1.81670 1.52141 1.20422 0.90715 0.94992 1.08630 1.20785 0.99957 0.90894 1.06679 1.18395 0.95217 0.94578 1.06800 1.20645 0.97888 0.93181 0.97628 1.20888 0.93944 1.00237 1.01987 1.21140 1.00623 0.90950 1.00238 1.20301 0.95003 0.97898 1.02855 1.18940 0.97541 0.86529 1.03376 1.40259 1.12126 1.05202 1.38746 1.19024 0.97300 0.86245 1.48149 0.88081 1.25696 0.95481 0.97805 0.94669 1.69690 1.12987 1.27530 1.37116 0.86338 0.79801 0.80390 0.80355 1.16366 1.19454 1.20364 0.92402 0.87997 0.92578 0.91340 0.87843 0.92474 0.85194 0.86294 0.72380 0.82960 0.83833 0.82689 0.83538 0.87545 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 8.81 71.98 0.63 -2.28 16 2 C -0.06 -1.37 2.70 -52.16 -0.14 -1.51 16 3 C -0.12 -2.23 8.86 71.98 0.64 -1.60 16 4 C -0.12 -3.01 9.43 30.62 0.29 -2.72 16 5 C 0.14 4.40 2.19 1.80 0.00 4.41 16 6 C 0.26 9.48 13.60 89.44 1.22 10.69 16 7 N -0.46 -17.94 18.54 20.01 0.37 -17.57 16 8 N -0.68 -26.40 5.06 -434.94 -2.20 -28.60 16 9 C 0.60 26.21 7.65 86.51 0.66 26.88 16 10 O -0.56 -26.29 16.33 -4.23 -0.07 -26.36 16 11 C -0.03 -1.57 6.77 39.91 0.27 -1.30 16 12 C -0.16 -6.64 10.55 22.63 0.24 -6.40 16 13 C -0.15 -5.99 6.16 -21.34 -0.13 -6.12 16 14 C -0.07 -2.45 10.06 22.31 0.22 -2.23 16 15 C -0.15 -4.40 9.97 22.03 0.22 -4.18 16 16 C -0.11 -3.55 10.02 22.32 0.22 -3.33 16 17 C -0.14 -5.71 7.00 22.38 0.16 -5.56 16 18 C 0.05 2.20 5.11 39.06 0.20 2.40 16 19 N -0.30 -13.93 2.33 -331.34 -0.77 -14.70 16 20 C -0.38 -18.16 8.00 84.09 0.67 -17.48 16 21 H 0.10 5.07 6.78 -2.91 -0.02 5.05 16 22 C 0.08 3.56 5.06 84.95 0.43 3.99 16 23 N -0.84 -39.22 13.95 21.67 0.30 -38.91 16 24 Si 0.91 38.16 24.38 68.60 1.67 39.83 16 25 H -0.24 -9.64 5.89 99.48 0.59 -9.06 16 26 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 27 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 28 H 0.06 1.62 8.08 -2.39 -0.02 1.60 16 29 H 0.10 1.78 8.01 -2.39 -0.02 1.76 16 30 H 0.06 1.49 7.95 -2.39 -0.02 1.47 16 31 H 0.07 1.19 7.90 -2.39 -0.02 1.17 16 32 H 0.10 1.35 7.99 -2.39 -0.02 1.33 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.13 2.60 8.05 -2.39 -0.02 2.58 16 35 H 0.12 2.87 8.08 -2.39 -0.02 2.85 16 36 H 0.43 17.11 3.95 -92.71 -0.37 16.74 16 37 H 0.15 5.88 8.06 -2.91 -0.02 5.86 16 38 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 39 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 40 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 41 H 0.11 4.50 6.32 -2.91 -0.02 4.48 16 42 H 0.30 12.62 8.31 -92.71 -0.77 11.85 16 Total: -1.00 -61.06 354.41 5.69 -55.37 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: 0.58 Total: 37.29 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 5.81 Total: -6.34 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -2.30 Total: -99.78 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.07 Total: -26.36 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 1.67 Total: 39.83 kcal Total: -61.06 5.69 -55.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589812139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.898 kcal (2) G-P(sol) polarization free energy of solvation -61.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds