Wall clock time and date at job start Tue Mar 31 2020 14:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00003 * 2 1 4 4 H 1.48498 * 109.47040 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46703 * 300.00069 * 3 2 1 6 6 H 1.48498 * 109.47163 * 60.00257 * 3 2 1 7 7 C 1.37873 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00169 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47364 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47364 * 180.02562 * 11 10 9 13 13 C 1.50690 * 109.47105 * 180.02562 * 12 11 10 14 14 O 1.21290 * 120.00487 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99988 * 179.97438 * 13 12 11 16 16 C 1.40028 * 120.00109 * 175.45955 * 15 13 12 17 17 C 1.38887 * 120.01734 * 35.11495 * 16 15 13 18 18 C 1.38179 * 120.08878 * 179.97438 * 17 16 15 19 19 C 1.38329 * 120.11061 * 0.02562 * 18 17 16 20 20 F 1.35096 * 119.98587 * 179.97438 * 19 18 17 21 21 C 1.39059 * 120.02705 * 359.97438 * 19 18 17 22 22 N 1.40081 * 120.03918 * 180.02562 * 21 19 18 23 23 C 1.34777 * 119.99960 * 214.98696 * 22 21 19 24 24 N 1.34771 * 119.99820 * 175.45605 * 23 22 21 25 25 O 1.21594 * 119.99974 * 355.45498 * 23 22 21 26 26 C 1.38708 * 119.92237 * 0.27765 * 21 19 18 27 27 H 0.97000 * 119.99952 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47018 * 60.00480 * 9 7 2 29 29 H 1.09004 * 109.47393 * 300.00288 * 9 7 2 30 30 H 1.09006 * 109.46955 * 60.00170 * 10 9 7 31 31 H 1.09005 * 109.47469 * 300.00214 * 10 9 7 32 32 H 1.09006 * 109.46964 * 60.00153 * 11 10 9 33 33 H 1.09000 * 109.46610 * 300.00226 * 11 10 9 34 34 H 1.08998 * 109.47168 * 59.99878 * 12 11 10 35 35 H 1.09004 * 109.46952 * 300.00264 * 12 11 10 36 36 H 0.97001 * 120.00253 * 355.45452 * 15 13 12 37 37 H 1.08010 * 119.95575 * 359.97438 * 17 16 15 38 38 H 1.08002 * 119.95051 * 180.02562 * 18 17 16 39 39 H 0.96997 * 119.99648 * 34.98592 * 22 21 19 40 40 H 0.97000 * 120.00140 * 359.97438 * 24 23 22 41 41 H 0.97002 * 120.00171 * 179.72734 * 24 23 22 42 42 H 1.08001 * 120.05911 * 179.70220 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9872 -0.0012 12 6 2.4744 -6.1501 -0.0005 13 6 1.7209 -7.4551 -0.0018 14 8 0.5080 -7.4552 -0.0036 15 7 2.3947 -8.6223 -0.0020 16 6 1.6978 -9.8331 0.0928 17 6 0.4544 -9.9683 -0.5111 18 6 -0.2343 -11.1626 -0.4189 19 6 0.3120 -12.2270 0.2754 20 9 -0.3638 -13.3934 0.3644 21 6 1.5566 -12.0968 0.8819 22 7 2.1103 -13.1747 1.5847 23 6 2.8510 -12.9505 2.6881 24 7 3.3071 -13.9890 3.4160 25 8 3.1078 -11.8112 3.0269 26 6 2.2467 -10.8968 0.7946 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8897 30 1 2.8718 -3.6044 0.8895 31 1 2.8719 -3.6044 -0.8905 32 1 0.8538 -5.0446 -0.8915 33 1 0.8532 -5.0451 0.8886 34 1 3.1004 -6.0924 0.8899 35 1 3.1017 -6.0923 -0.8901 36 1 3.3625 -8.6237 -0.0679 37 1 0.0253 -9.1387 -1.0536 38 1 -1.2009 -11.2654 -0.8898 39 1 1.9606 -14.0823 1.2772 40 1 3.1019 -14.8978 3.1460 41 1 3.8435 -13.8278 4.2080 42 1 3.2113 -10.7918 1.2689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590076869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:17 Heat of formation + Delta-G solvation = -128.362171 kcal Electronic energy + Delta-G solvation = -25676.956221 eV Core-core repulsion = 21569.702121 eV Total energy + Delta-G solvation = -4107.254100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.93569 -41.88889 -41.18790 -39.32063 -36.74989 -36.27149 -35.33074 -34.68748 -34.54019 -31.79264 -30.93793 -29.80254 -27.43234 -24.83252 -24.70969 -23.25012 -22.47106 -21.68608 -21.21005 -19.89766 -19.25208 -18.54374 -18.39106 -18.22299 -17.76521 -17.27187 -16.80966 -16.70454 -16.49143 -16.34166 -16.00184 -15.57501 -15.33865 -15.16922 -14.93899 -14.54844 -14.39869 -14.08141 -13.76915 -13.59043 -13.48624 -13.24340 -12.85402 -12.83872 -12.30956 -12.13858 -12.12958 -11.96201 -11.37310 -11.35167 -11.32688 -11.18745 -11.04798 -10.81079 -10.71900 -10.54532 -9.56811 -9.01561 -8.17850 -6.29658 -0.06496 0.11742 1.41001 1.41862 1.50098 1.55312 1.56204 1.89145 2.08016 2.42667 2.57830 3.11805 3.14940 3.42081 3.63858 3.78345 4.02137 4.08699 4.14983 4.17702 4.31887 4.51157 4.68198 4.70125 4.85590 4.88932 4.90414 5.12495 5.14167 5.20871 5.22788 5.35285 5.37486 5.43340 5.59195 5.68483 5.80492 5.87837 5.90164 5.91176 6.26803 6.38242 6.83267 6.89260 7.10102 7.39871 7.44866 8.94505 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024889 B = 0.001865 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.744002 B =15011.790997 C =15794.186217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.126 4.126 13 C 0.514 3.486 14 O -0.558 6.558 15 N -0.661 5.661 16 C 0.149 3.851 17 C -0.123 4.123 18 C -0.112 4.112 19 C 0.051 3.949 20 F -0.136 7.136 21 C 0.148 3.852 22 N -0.670 5.670 23 C 0.701 3.299 24 N -0.836 5.836 25 O -0.618 6.618 26 C -0.125 4.125 27 H 0.262 0.738 28 H -0.014 1.014 29 H -0.016 1.016 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.430 0.570 37 H 0.137 0.863 38 H 0.160 0.840 39 H 0.426 0.574 40 H 0.418 0.582 41 H 0.426 0.574 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.445 -35.953 1.368 37.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.020 4.020 10 C -0.134 4.134 11 C -0.135 4.135 12 C -0.165 4.165 13 C 0.304 3.696 14 O -0.436 6.436 15 N -0.308 5.308 16 C 0.054 3.946 17 C -0.145 4.145 18 C -0.132 4.132 19 C 0.028 3.972 20 F -0.115 7.115 21 C 0.050 3.950 22 N -0.321 5.321 23 C 0.400 3.600 24 N -0.405 5.405 25 O -0.498 6.498 26 C -0.148 4.148 27 H 0.071 0.929 28 H 0.005 0.995 29 H 0.002 0.998 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.269 0.731 37 H 0.154 0.846 38 H 0.178 0.822 39 H 0.265 0.735 40 H 0.249 0.751 41 H 0.261 0.739 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.626 -34.914 1.609 36.000 hybrid contribution 0.049 0.088 0.139 0.172 sum 8.675 -34.827 1.748 35.933 Atomic orbital electron populations 1.70139 1.08025 1.27638 1.52015 1.26096 0.95804 1.03740 0.94891 0.85336 0.79206 0.78467 0.77637 1.18097 1.20467 1.20578 1.21794 0.93764 0.92248 1.49982 0.91572 1.19072 0.94733 0.93793 0.94376 1.21451 0.97827 0.92708 1.01404 1.21264 0.97476 0.93432 1.01324 1.21698 0.99020 0.88508 1.07266 1.21460 0.88064 0.86239 0.73801 1.90701 1.16009 1.87791 1.49065 1.43487 1.11717 1.03044 1.72531 1.17745 0.93831 0.86428 0.96610 1.21199 0.94942 0.97875 1.00436 1.21061 1.01631 0.90934 0.99549 1.17372 0.90125 0.83704 1.05954 1.91470 1.79317 1.45544 1.95142 1.17112 0.91198 0.89717 0.96932 1.42219 1.53801 1.09261 1.26788 1.16129 0.78623 0.85412 0.79882 1.42742 1.58442 1.08041 1.31287 1.90989 1.63661 1.22515 1.72653 1.20886 1.02636 0.91836 0.99420 0.92894 0.99513 0.99779 0.92189 0.91829 0.93282 0.93879 0.86132 0.85422 0.73074 0.84555 0.82220 0.73465 0.75078 0.73931 0.82948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.26 13.29 21.45 0.28 -58.98 16 2 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 3 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.02 0.95 4.97 29.85 0.15 1.10 16 10 C -0.10 -3.89 5.15 30.60 0.16 -3.73 16 11 C -0.10 -3.40 4.50 30.60 0.14 -3.26 16 12 C -0.13 -2.95 5.70 29.84 0.17 -2.78 16 13 C 0.51 13.58 7.67 87.65 0.67 14.25 16 14 O -0.56 -19.68 13.42 -3.06 -0.04 -19.72 16 15 N -0.66 -13.26 5.34 -303.51 -1.62 -14.88 16 16 C 0.15 3.37 6.30 38.11 0.24 3.61 16 17 C -0.12 -2.92 8.69 22.41 0.19 -2.72 16 18 C -0.11 -2.20 10.01 22.28 0.22 -1.98 16 19 C 0.05 0.95 7.31 22.49 0.16 1.12 16 20 F -0.14 -2.32 16.95 44.97 0.76 -1.56 16 21 C 0.15 2.75 6.31 38.13 0.24 2.99 16 22 N -0.67 -8.47 5.23 -317.04 -1.66 -10.13 16 23 C 0.70 10.58 8.68 179.06 1.55 12.13 16 24 N -0.84 -4.12 8.88 -184.75 -1.64 -5.76 16 25 O -0.62 -15.38 14.59 -4.01 -0.06 -15.44 16 26 C -0.12 -2.60 8.62 22.51 0.19 -2.41 16 27 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 28 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 29 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 30 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 32 H 0.05 1.86 8.10 -2.38 -0.02 1.84 16 33 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 34 H 0.12 2.30 8.14 -2.39 -0.02 2.29 16 35 H 0.13 2.22 8.14 -2.39 -0.02 2.21 16 36 H 0.43 5.37 8.82 -92.71 -0.82 4.55 16 37 H 0.14 3.69 6.22 -2.91 -0.02 3.67 16 38 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 39 H 0.43 2.41 8.68 -92.71 -0.80 1.61 16 40 H 0.42 -0.94 8.85 -92.71 -0.82 -1.76 16 41 H 0.43 1.50 8.93 -92.71 -0.83 0.67 16 42 H 0.15 3.26 6.19 -2.91 -0.02 3.24 16 Total: -1.00 -83.86 363.90 0.69 -83.17 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -2.16 Total: 9.04 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 4.79 Total: -12.88 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -4.63 Total: -89.74 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -0.10 Total: -35.16 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.76 Total: -1.56 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -83.86 0.69 -83.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590076869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.187 kcal (2) G-P(sol) polarization free energy of solvation -83.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds