Wall clock time and date at job start Tue Mar 31 2020 13:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52997 * 112.85028 * 246.24785 * 3 2 1 5 5 N 1.46496 * 109.47203 * 53.99192 * 4 3 2 6 6 C 1.34781 * 120.00159 * 184.76894 * 5 4 3 7 7 O 1.21668 * 119.99624 * 3.67522 * 6 5 4 8 8 C 1.46891 * 120.00174 * 183.68366 * 6 5 4 9 9 C 1.36118 * 125.43647 * 181.20123 * 8 6 5 10 10 C 1.41698 * 107.75007 * 180.27731 * 9 8 6 11 11 C 1.40016 * 133.35173 * 179.77733 * 10 9 8 12 12 C 1.36580 * 119.82984 * 179.97438 * 11 10 9 13 13 C 1.38853 * 120.60200 * 359.95751 * 12 11 10 14 14 C 1.37844 * 120.63247 * 0.02568 * 13 12 11 15 15 C 1.39085 * 119.81229 * 359.97438 * 14 13 12 16 16 N 1.37846 * 133.16412 * 180.02562 * 15 14 13 17 17 C 1.36894 * 125.61779 * 359.97438 * 16 15 14 18 18 H 1.07997 * 119.99955 * 130.36026 * 17 16 15 19 19 C 1.39008 * 119.99850 * 310.35366 * 17 16 15 20 20 N 1.31345 * 120.00477 * 346.85941 * 19 17 16 21 21 Si 1.86798 * 119.99808 * 166.85460 * 19 17 16 22 22 H 1.48500 * 109.47242 * 185.15353 * 21 19 17 23 23 H 1.48507 * 109.47171 * 305.15172 * 21 19 17 24 24 H 1.48496 * 109.47284 * 65.15317 * 21 19 17 25 25 C 1.53785 * 113.69053 * 17.51753 * 3 2 1 26 26 C 1.53774 * 87.08151 * 89.12544 * 25 3 2 27 27 C 1.53775 * 113.61424 * 115.04819 * 3 2 1 28 28 H 1.09002 * 109.47353 * 293.98992 * 4 3 2 29 29 H 1.09000 * 109.46952 * 173.99569 * 4 3 2 30 30 H 0.97006 * 120.00114 * 4.76590 * 5 4 3 31 31 H 1.08000 * 126.12476 * 0.02562 * 9 8 6 32 32 H 1.08000 * 120.09086 * 359.97438 * 11 10 9 33 33 H 1.07999 * 119.70087 * 179.97438 * 12 11 10 34 34 H 1.07999 * 119.68757 * 180.02562 * 13 12 11 35 35 H 1.07998 * 120.10075 * 179.97438 * 14 13 12 36 36 H 0.97002 * 119.99770 * 354.41976 * 20 19 17 37 37 H 1.08995 * 113.61484 * 203.67621 * 25 3 2 38 38 H 1.09008 * 113.61427 * 334.57378 * 25 3 2 39 39 H 1.09000 * 113.61197 * 270.88158 * 26 25 3 40 40 H 1.08996 * 113.61415 * 139.98350 * 26 25 3 41 41 H 1.09006 * 113.61255 * 25.35020 * 27 3 2 42 42 H 1.08996 * 113.61801 * 156.24981 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2019 0.5688 1.2905 5 7 2.6436 -0.1458 2.4410 6 6 2.9500 0.2486 3.6928 7 8 3.6358 1.2382 3.8680 8 6 2.4561 -0.5162 4.8455 9 6 2.6780 -0.2059 6.1522 10 6 2.0404 -1.1925 6.9447 11 6 1.9321 -1.3932 8.3262 12 6 1.2325 -2.4644 8.8043 13 6 0.6252 -3.3582 7.9323 14 6 0.7176 -3.1815 6.5683 15 6 1.4247 -2.0980 6.0578 16 7 1.6884 -1.6634 4.7765 17 6 1.2654 -2.2717 3.6254 18 1 0.7807 -1.6910 2.8545 19 6 1.4600 -3.6367 3.4487 20 7 2.2663 -4.2944 4.2502 21 14 0.5746 -4.5357 2.0713 22 1 0.8506 -5.9913 2.1725 23 1 -0.8872 -4.2999 2.1857 24 1 1.0563 -4.0305 0.7606 25 6 3.2265 -1.3420 -0.4239 26 6 3.1734 -0.8204 -1.8695 27 6 3.2237 0.5975 -1.2765 28 1 2.9575 1.6283 1.3673 29 1 4.2849 0.4459 1.2769 30 1 2.0533 -0.9029 2.3019 31 1 3.2425 0.6385 6.5191 32 1 2.4005 -0.7029 9.0120 33 1 1.1507 -2.6175 9.8702 34 1 0.0753 -4.2000 8.3264 35 1 0.2422 -3.8822 5.8980 36 1 2.7878 -3.8155 4.9133 37 1 4.2396 -1.4931 -0.0512 38 1 2.5763 -2.1983 -0.2444 39 1 2.2379 -1.0468 -2.3812 40 1 4.0528 -1.0785 -2.4594 41 1 2.5713 1.3071 -1.7854 42 1 4.2360 0.9767 -1.1369 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591323125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:26 Heat of formation + Delta-G solvation = 65.945780 kcal Electronic energy + Delta-G solvation = -27195.702103 eV Core-core repulsion = 23527.643053 eV Total energy + Delta-G solvation = -3668.059050 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.78819 -40.07649 -38.37560 -36.15799 -35.76880 -34.30120 -33.58981 -30.73370 -29.59290 -28.70726 -27.76612 -25.97769 -24.91069 -24.24005 -22.51165 -21.23866 -21.05645 -20.21614 -19.51832 -18.61004 -16.86936 -16.59966 -15.85115 -15.74531 -15.15492 -15.02681 -14.91345 -14.45143 -14.38283 -14.03143 -13.88618 -13.55993 -13.20903 -13.17013 -12.93841 -12.84338 -12.59643 -12.46958 -12.17442 -12.07830 -11.88029 -11.67908 -11.25768 -11.02685 -10.95856 -10.67514 -10.60680 -10.47696 -10.41661 -10.38494 -9.95240 -9.53455 -9.28035 -8.87772 -8.66007 -7.58605 -7.10747 -6.77879 -4.84646 1.64084 2.54736 2.65985 2.74516 2.91828 2.98438 3.04295 3.21016 3.60595 3.72761 3.77174 4.15235 4.29326 4.31674 4.44795 4.56596 4.62595 4.65385 4.81502 5.15605 5.45817 5.50135 5.51936 5.56058 5.65348 5.68943 5.76777 5.79335 5.89500 5.89952 5.99610 6.09042 6.23029 6.33964 6.48037 6.68395 6.80675 6.86495 6.90287 7.18007 7.30649 7.39952 7.52944 7.55682 7.69003 7.75337 8.04392 8.17285 8.57452 8.81306 9.04889 10.05958 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013997 B = 0.004984 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.936042 B = 5616.903196 C = 6990.815078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.226 3.774 3 C -0.011 4.011 4 C 0.138 3.862 5 N -0.729 5.729 6 C 0.598 3.402 7 O -0.556 6.556 8 C -0.015 4.015 9 C -0.162 4.162 10 C -0.129 4.129 11 C -0.080 4.080 12 C -0.160 4.160 13 C -0.132 4.132 14 C -0.083 4.083 15 C 0.079 3.921 16 N -0.271 5.271 17 C -0.450 4.450 18 H 0.094 0.906 19 C 0.034 3.966 20 N -0.824 5.824 21 Si 1.068 2.932 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.122 4.122 26 C -0.143 4.143 27 C -0.111 4.111 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.417 0.583 31 H 0.136 0.864 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.290 0.710 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 2.803 -7.719 8.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.092 4.092 3 C -0.015 4.015 4 C 0.013 3.987 5 N -0.390 5.390 6 C 0.387 3.613 7 O -0.435 6.435 8 C -0.129 4.129 9 C -0.190 4.190 10 C -0.134 4.134 11 C -0.099 4.099 12 C -0.179 4.179 13 C -0.152 4.152 14 C -0.103 4.103 15 C -0.035 4.035 16 N 0.064 4.936 17 C -0.577 4.577 18 H 0.111 0.889 19 C -0.183 4.183 20 N -0.451 5.451 21 Si 0.891 3.109 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.160 4.160 26 C -0.180 4.180 27 C -0.150 4.150 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.264 0.736 31 H 0.153 0.847 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.338 1.822 -8.635 8.926 hybrid contribution 0.326 1.124 0.720 1.375 sum 1.665 2.946 -7.914 8.607 Atomic orbital electron populations 1.81227 1.12266 1.07870 1.07860 1.28163 0.93954 0.93625 0.93476 1.19519 0.82766 1.01543 0.97639 1.21244 0.98291 0.96876 0.82282 1.46743 1.51715 1.35943 1.04637 1.17202 0.79157 0.82949 0.82014 1.90723 1.40280 1.26463 1.86062 1.20288 1.03244 0.95200 0.94185 1.20453 1.06852 1.01409 0.90280 1.18040 1.04752 0.97545 0.93042 1.20139 0.99262 0.97608 0.92869 1.20343 1.02256 0.96881 0.98396 1.20621 1.02338 0.99785 0.92464 1.20125 0.99430 0.96074 0.94679 1.18547 1.02330 0.98032 0.84578 1.40068 1.32289 1.17415 1.03875 1.20282 1.45044 0.95722 0.96624 0.88852 1.26773 0.95894 0.93702 1.01931 1.70593 1.17514 1.40257 1.16695 0.83508 0.76393 0.77163 0.73849 1.19187 1.19987 1.20015 1.23111 1.02407 0.94918 0.95612 1.22919 1.02946 0.95568 0.96613 1.22960 1.01922 0.97595 0.92529 0.90688 0.89776 0.73621 0.84664 0.87346 0.87454 0.87146 0.86620 0.89724 0.87562 0.89983 0.90013 0.90144 0.90383 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.36 18.54 42.15 0.78 -6.58 16 2 C 0.23 3.42 13.37 -20.76 -0.28 3.14 16 3 C -0.01 -0.13 0.94 -156.48 -0.15 -0.27 16 4 C 0.14 1.95 5.05 -4.05 -0.02 1.93 16 5 N -0.73 -13.77 5.21 -61.55 -0.32 -14.09 16 6 C 0.60 13.19 7.78 -12.76 -0.10 13.09 16 7 O -0.56 -12.79 16.83 5.22 0.09 -12.70 16 8 C -0.01 -0.36 6.77 -82.25 -0.56 -0.91 16 9 C -0.16 -3.71 10.55 -39.02 -0.41 -4.12 16 10 C -0.13 -2.94 6.16 -106.89 -0.66 -3.59 16 11 C -0.08 -1.57 10.06 -39.51 -0.40 -1.97 16 12 C -0.16 -2.93 9.97 -39.95 -0.40 -3.33 16 13 C -0.13 -2.57 10.02 -39.50 -0.40 -2.97 16 14 C -0.08 -1.89 8.83 -39.41 -0.35 -2.24 16 15 C 0.08 1.92 5.36 -83.83 -0.45 1.47 16 16 N -0.27 -6.68 2.47 -56.08 -0.14 -6.82 16 17 C -0.45 -10.81 7.70 -15.01 -0.12 -10.92 16 18 H 0.09 2.22 6.28 -52.49 -0.33 1.89 16 19 C 0.03 0.79 4.65 -17.47 -0.08 0.71 16 20 N -0.82 -20.97 12.53 55.50 0.70 -20.27 16 21 Si 1.07 20.76 29.94 -169.99 -5.09 15.67 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 24 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 25 C -0.12 -1.31 7.21 -25.92 -0.19 -1.50 16 26 C -0.14 -1.17 7.79 -25.93 -0.20 -1.37 16 27 C -0.11 -0.89 7.21 -25.92 -0.19 -1.08 16 28 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 29 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 30 H 0.42 8.29 3.76 -40.82 -0.15 8.14 16 31 H 0.14 2.83 8.06 -52.49 -0.42 2.41 16 32 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 33 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 35 H 0.12 2.70 7.34 -52.49 -0.39 2.32 16 36 H 0.29 7.84 6.90 -40.82 -0.28 7.55 16 37 H 0.11 1.02 8.04 -51.93 -0.42 0.60 16 38 H 0.08 1.03 8.09 -51.92 -0.42 0.61 16 39 H 0.08 0.71 8.13 -51.93 -0.42 0.28 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 42 H 0.11 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -29.44 357.50 -8.53 -37.97 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -5.00 Total: 15.37 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -4.93 Total: -13.93 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 1.02 Total: -47.76 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.09 Total: 15.67 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.44 -8.53 -37.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591323125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.915 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds