Wall clock time and date at job start Tue Mar 31 2020 13:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52997 * 112.85028 * 246.24785 * 3 2 1 5 5 N 1.46496 * 109.47203 * 53.99192 * 4 3 2 6 6 C 1.34781 * 120.00159 * 184.76894 * 5 4 3 7 7 O 1.21668 * 119.99624 * 3.67522 * 6 5 4 8 8 C 1.46891 * 120.00174 * 183.68366 * 6 5 4 9 9 C 1.36118 * 125.43647 * 181.20123 * 8 6 5 10 10 C 1.41698 * 107.75007 * 180.27731 * 9 8 6 11 11 C 1.40016 * 133.35173 * 179.77733 * 10 9 8 12 12 C 1.36580 * 119.82984 * 179.97438 * 11 10 9 13 13 C 1.38853 * 120.60200 * 359.95751 * 12 11 10 14 14 C 1.37844 * 120.63247 * 0.02568 * 13 12 11 15 15 C 1.39085 * 119.81229 * 359.97438 * 14 13 12 16 16 N 1.37846 * 133.16412 * 180.02562 * 15 14 13 17 17 C 1.36894 * 125.61779 * 359.97438 * 16 15 14 18 18 H 1.07997 * 119.99955 * 130.36026 * 17 16 15 19 19 C 1.39008 * 119.99850 * 310.35366 * 17 16 15 20 20 N 1.31345 * 120.00477 * 346.85941 * 19 17 16 21 21 Si 1.86798 * 119.99808 * 166.85460 * 19 17 16 22 22 H 1.48500 * 109.47242 * 185.15353 * 21 19 17 23 23 H 1.48507 * 109.47171 * 305.15172 * 21 19 17 24 24 H 1.48496 * 109.47284 * 65.15317 * 21 19 17 25 25 C 1.53785 * 113.69053 * 17.51753 * 3 2 1 26 26 C 1.53774 * 87.08151 * 89.12544 * 25 3 2 27 27 C 1.53775 * 113.61424 * 115.04819 * 3 2 1 28 28 H 1.09002 * 109.47353 * 293.98992 * 4 3 2 29 29 H 1.09000 * 109.46952 * 173.99569 * 4 3 2 30 30 H 0.97006 * 120.00114 * 4.76590 * 5 4 3 31 31 H 1.08000 * 126.12476 * 0.02562 * 9 8 6 32 32 H 1.08000 * 120.09086 * 359.97438 * 11 10 9 33 33 H 1.07999 * 119.70087 * 179.97438 * 12 11 10 34 34 H 1.07999 * 119.68757 * 180.02562 * 13 12 11 35 35 H 1.07998 * 120.10075 * 179.97438 * 14 13 12 36 36 H 0.97002 * 119.99770 * 354.41976 * 20 19 17 37 37 H 1.08995 * 113.61484 * 203.67621 * 25 3 2 38 38 H 1.09008 * 113.61427 * 334.57378 * 25 3 2 39 39 H 1.09000 * 113.61197 * 270.88158 * 26 25 3 40 40 H 1.08996 * 113.61415 * 139.98350 * 26 25 3 41 41 H 1.09006 * 113.61255 * 25.35020 * 27 3 2 42 42 H 1.08996 * 113.61801 * 156.24981 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2019 0.5688 1.2905 5 7 2.6436 -0.1458 2.4410 6 6 2.9500 0.2486 3.6928 7 8 3.6358 1.2382 3.8680 8 6 2.4561 -0.5162 4.8455 9 6 2.6780 -0.2059 6.1522 10 6 2.0404 -1.1925 6.9447 11 6 1.9321 -1.3932 8.3262 12 6 1.2325 -2.4644 8.8043 13 6 0.6252 -3.3582 7.9323 14 6 0.7176 -3.1815 6.5683 15 6 1.4247 -2.0980 6.0578 16 7 1.6884 -1.6634 4.7765 17 6 1.2654 -2.2717 3.6254 18 1 0.7807 -1.6910 2.8545 19 6 1.4600 -3.6367 3.4487 20 7 2.2663 -4.2944 4.2502 21 14 0.5746 -4.5357 2.0713 22 1 0.8506 -5.9913 2.1725 23 1 -0.8872 -4.2999 2.1857 24 1 1.0563 -4.0305 0.7606 25 6 3.2265 -1.3420 -0.4239 26 6 3.1734 -0.8204 -1.8695 27 6 3.2237 0.5975 -1.2765 28 1 2.9575 1.6283 1.3673 29 1 4.2849 0.4459 1.2769 30 1 2.0533 -0.9029 2.3019 31 1 3.2425 0.6385 6.5191 32 1 2.4005 -0.7029 9.0120 33 1 1.1507 -2.6175 9.8702 34 1 0.0753 -4.2000 8.3264 35 1 0.2422 -3.8822 5.8980 36 1 2.7878 -3.8155 4.9133 37 1 4.2396 -1.4931 -0.0512 38 1 2.5763 -2.1983 -0.2444 39 1 2.2379 -1.0468 -2.3812 40 1 4.0528 -1.0785 -2.4594 41 1 2.5713 1.3071 -1.7854 42 1 4.2360 0.9767 -1.1369 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591323125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:25 Heat of formation + Delta-G solvation = 50.684243 kcal Electronic energy + Delta-G solvation = -27196.363893 eV Core-core repulsion = 23527.643053 eV Total energy + Delta-G solvation = -3668.720840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.46912 -41.14010 -39.90347 -37.80859 -36.98912 -35.88284 -35.24729 -32.46013 -31.08755 -30.26597 -29.18867 -26.76271 -26.66376 -25.53330 -23.95096 -22.79311 -22.15902 -21.74051 -21.19719 -20.30883 -18.32886 -17.80141 -17.50849 -17.12172 -16.69269 -16.48398 -16.16832 -15.95154 -15.69629 -15.54847 -15.11640 -14.96369 -14.84240 -14.77233 -14.29052 -14.20037 -13.98530 -13.83328 -13.58147 -13.28305 -13.20690 -12.84863 -12.63584 -12.49190 -12.20594 -12.15758 -12.03246 -11.74106 -11.61166 -11.55062 -11.33183 -11.14916 -11.02797 -10.59763 -10.16213 -9.40801 -8.85923 -8.51814 -6.72423 -0.04318 0.92102 1.22711 1.38680 1.43834 1.50918 1.55124 1.65844 2.09922 2.19744 2.40744 2.61519 2.67357 2.81075 3.15087 3.46469 3.55178 3.61588 3.86421 3.92132 4.06210 4.29108 4.38742 4.40163 4.51525 4.58974 4.63135 4.67422 4.81872 4.82986 4.84649 5.03098 5.04054 5.07418 5.11463 5.14415 5.22701 5.36273 5.38362 5.41801 5.66229 5.71341 5.79051 5.99615 6.04167 6.35603 6.40205 6.47091 6.78712 7.13918 7.25366 8.14574 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013997 B = 0.004984 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.936042 B = 5616.903196 C = 6990.815078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.242 3.758 3 C -0.021 4.021 4 C 0.133 3.867 5 N -0.725 5.725 6 C 0.591 3.409 7 O -0.573 6.573 8 C -0.044 4.044 9 C -0.169 4.169 10 C -0.149 4.149 11 C -0.081 4.081 12 C -0.152 4.152 13 C -0.117 4.117 14 C -0.118 4.118 15 C 0.054 3.946 16 N -0.289 5.289 17 C -0.456 4.456 18 H 0.088 0.912 19 C 0.008 3.992 20 N -0.845 5.845 21 Si 1.103 2.897 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.249 1.249 25 C -0.127 4.127 26 C -0.132 4.132 27 C -0.093 4.093 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.413 0.587 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.153 0.847 34 H 0.143 0.857 35 H 0.096 0.904 36 H 0.271 0.729 37 H 0.120 0.880 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.806 2.913 -7.846 9.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.076 4.076 3 C -0.025 4.025 4 C 0.009 3.991 5 N -0.383 5.383 6 C 0.380 3.620 7 O -0.454 6.454 8 C -0.157 4.157 9 C -0.197 4.197 10 C -0.153 4.153 11 C -0.100 4.100 12 C -0.170 4.170 13 C -0.137 4.137 14 C -0.138 4.138 15 C -0.060 4.060 16 N 0.044 4.956 17 C -0.582 4.582 18 H 0.105 0.895 19 C -0.203 4.203 20 N -0.472 5.472 21 Si 0.920 3.080 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.173 1.173 25 C -0.166 4.166 26 C -0.169 4.169 27 C -0.132 4.132 28 H 0.095 0.905 29 H 0.125 0.875 30 H 0.258 0.742 31 H 0.167 0.833 32 H 0.159 0.841 33 H 0.171 0.829 34 H 0.160 0.840 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.138 0.862 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.238 1.949 -8.790 9.277 hybrid contribution 0.029 1.121 0.925 1.454 sum 2.267 3.071 -7.864 8.742 Atomic orbital electron populations 1.81224 1.13966 1.09768 1.09602 1.28850 0.94715 0.92037 0.91951 1.19877 0.80790 1.03507 0.98281 1.21600 0.99542 0.96591 0.81385 1.46775 1.50907 1.35628 1.05036 1.17156 0.79280 0.82817 0.82751 1.90687 1.41262 1.27040 1.86426 1.20755 1.03965 0.95506 0.95503 1.20734 1.06789 1.01829 0.90305 1.18428 1.05014 0.97355 0.94543 1.20589 0.98966 0.98547 0.91866 1.20839 1.00315 0.95395 1.00490 1.21092 1.00916 1.00415 0.91235 1.20192 1.01255 0.96262 0.96078 1.19002 1.03096 0.98964 0.84899 1.40198 1.33233 1.17963 1.04196 1.20361 1.44957 0.96027 0.96865 0.89469 1.27906 0.95402 0.94253 1.02718 1.70701 1.19044 1.39915 1.17501 0.83117 0.75510 0.76380 0.72983 1.19008 1.20013 1.17253 1.23228 1.02390 0.93194 0.97785 1.22885 1.03896 0.95028 0.95105 1.23055 1.03153 0.97727 0.89247 0.90538 0.87510 0.74241 0.83328 0.84100 0.82897 0.83957 0.88553 0.91810 0.86155 0.92299 0.90695 0.87416 0.89612 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -16.95 18.54 20.01 0.37 -16.58 16 2 C 0.24 7.32 13.37 89.44 1.20 8.51 16 3 C -0.02 -0.46 0.94 -53.46 -0.05 -0.51 16 4 C 0.13 3.61 5.05 86.38 0.44 4.05 16 5 N -0.73 -27.87 5.21 -466.88 -2.43 -30.31 16 6 C 0.59 26.79 7.78 86.51 0.67 27.47 16 7 O -0.57 -26.68 16.83 -4.25 -0.07 -26.75 16 8 C -0.04 -2.16 6.77 39.91 0.27 -1.89 16 9 C -0.17 -7.87 10.55 22.63 0.24 -7.63 16 10 C -0.15 -6.80 6.16 -21.34 -0.13 -6.93 16 11 C -0.08 -3.01 10.06 22.31 0.22 -2.78 16 12 C -0.15 -5.07 9.97 22.03 0.22 -4.85 16 13 C -0.12 -4.34 10.02 22.32 0.22 -4.12 16 14 C -0.12 -5.44 8.83 22.38 0.20 -5.24 16 15 C 0.05 2.68 5.36 39.06 0.21 2.89 16 16 N -0.29 -14.86 2.47 -331.34 -0.82 -15.67 16 17 C -0.46 -22.83 7.70 84.09 0.65 -22.18 16 18 H 0.09 4.36 6.28 -2.91 -0.02 4.34 16 19 C 0.01 0.41 4.65 84.95 0.40 0.81 16 20 N -0.84 -44.50 12.53 21.67 0.27 -44.22 16 21 Si 1.10 42.52 29.94 68.60 2.05 44.57 16 22 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 23 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 24 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 25 C -0.13 -2.52 7.21 31.12 0.22 -2.30 16 26 C -0.13 -1.77 7.79 31.12 0.24 -1.52 16 27 C -0.09 -1.20 7.21 31.12 0.22 -0.97 16 28 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 29 H 0.11 2.46 8.05 -2.39 -0.02 2.44 16 30 H 0.41 16.93 3.76 -92.70 -0.35 16.58 16 31 H 0.15 6.28 8.06 -2.91 -0.02 6.26 16 32 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 33 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 34 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 35 H 0.10 4.71 7.34 -2.91 -0.02 4.69 16 36 H 0.27 15.31 6.90 -92.71 -0.64 14.67 16 37 H 0.12 2.04 8.04 -2.39 -0.02 2.02 16 38 H 0.06 1.44 8.09 -2.38 -0.02 1.42 16 39 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 1.04 8.08 -2.38 -0.02 1.02 16 42 H 0.14 1.01 8.10 -2.39 -0.02 0.99 16 Total: -1.00 -68.09 357.50 5.66 -62.44 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: 0.84 Total: 43.74 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 5.44 Total: -17.21 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -2.61 Total: -106.79 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.07 Total: -26.75 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.05 Total: 44.57 kcal Total: -68.09 5.66 -62.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591323125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.119 kcal (2) G-P(sol) polarization free energy of solvation -68.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds