Wall clock time and date at job start Tue Mar 31 2020 14:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39213 * 119.61861 * 2 1 4 4 C 1.36222 * 121.03203 * 179.97438 * 3 2 1 5 5 C 1.40450 * 119.81800 * 0.02562 * 4 3 2 6 6 N 1.34029 * 120.74980 * 180.02562 * 5 4 3 7 7 C 1.30861 * 121.99810 * 179.71095 * 6 5 4 8 8 C 1.40413 * 121.63593 * 0.56912 * 7 6 5 9 9 C 1.43204 * 120.35166 * 179.70150 * 8 7 6 10 10 N 7.17918 * 141.71679 * 179.97438 * 2 1 3 11 11 C 1.40242 * 119.29140 * 359.42709 * 8 7 6 12 12 N 1.37905 * 121.11701 * 180.29582 * 11 8 7 13 13 C 1.47907 * 110.99879 * 60.14487 * 12 11 8 14 14 C 1.53989 * 107.06057 * 214.15607 * 13 12 11 15 15 C 1.54595 * 105.14217 * 1.22304 * 14 13 12 16 16 O 1.42900 * 110.72811 * 263.60445 * 15 14 13 17 17 C 1.50699 * 110.72555 * 140.49375 * 15 14 13 18 18 H 1.08001 * 119.99987 * 241.45974 * 17 15 14 19 19 C 1.37879 * 119.99956 * 61.45875 * 17 15 14 20 20 N 1.31515 * 119.99930 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 119.99978 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47363 * 59.99952 * 21 19 17 23 23 H 1.48499 * 109.47033 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47209 * 300.00083 * 21 19 17 25 25 C 1.48533 * 111.00398 * 302.75201 * 12 11 8 26 26 C 1.41512 * 119.00759 * 0.02562 * 5 4 3 27 27 C 1.36298 * 119.62120 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.46766 * 90.00164 * 1 2 3 29 29 H 1.08999 * 109.47249 * 209.99932 * 1 2 3 30 30 H 1.08999 * 109.47202 * 330.00299 * 1 2 3 31 31 H 1.07999 * 119.48229 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.09070 * 179.97438 * 4 3 2 33 33 H 1.07998 * 119.17896 * 180.26917 * 7 6 5 34 34 H 1.08993 * 109.91698 * 333.51034 * 13 12 11 35 35 H 1.09008 * 109.91599 * 94.60271 * 13 12 11 36 36 H 1.08998 * 110.31252 * 120.14576 * 14 13 12 37 37 H 1.09009 * 110.30797 * 242.31104 * 14 13 12 38 38 H 0.96701 * 113.99758 * 298.54186 * 16 15 14 39 39 H 0.96993 * 120.00120 * 180.02562 * 20 19 17 40 40 H 1.09000 * 110.67084 * 278.15652 * 25 12 11 41 41 H 1.09001 * 110.66852 * 41.28465 * 25 12 11 42 42 H 1.08002 * 120.17343 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1949 1.2102 0.0000 4 6 3.5568 1.2438 0.0005 5 6 4.2850 0.0429 0.0005 6 7 5.6252 0.0541 0.0015 7 6 6.3279 -1.0498 0.0072 8 6 5.7150 -2.3130 0.0006 9 6 6.5109 -3.5035 0.0006 10 7 7.1423 -4.4479 0.0020 11 6 4.3151 -2.3964 -0.0001 12 7 3.6739 -3.6174 -0.0003 13 6 4.0354 -4.4062 1.1975 14 6 4.0597 -5.8863 0.7733 15 6 3.7226 -5.8796 -0.7355 16 8 2.3312 -6.1296 -0.9440 17 6 4.5607 -6.8913 -1.4737 18 1 5.2403 -6.5676 -2.2481 19 6 4.4599 -8.2302 -1.1604 20 7 3.6320 -8.6244 -0.2176 21 14 5.4993 -9.4843 -2.0749 22 1 6.9380 -9.1761 -1.8737 23 1 5.2072 -10.8438 -1.5537 24 1 5.1795 -9.4299 -3.5240 25 6 4.0911 -4.4376 -1.1663 26 6 3.5825 -1.1856 -0.0006 27 6 2.1806 -1.1849 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6403 2.1369 -0.0004 32 1 4.0750 2.1913 0.0001 33 1 7.4061 -0.9876 0.0122 34 1 5.0201 -4.1065 1.5561 35 1 3.2928 -4.2534 1.9807 36 1 5.0500 -6.3109 0.9378 37 1 3.3086 -6.4507 1.3262 38 1 2.0333 -6.9904 -0.6194 39 1 3.5614 -9.5663 0.0031 40 1 3.5354 -4.1487 -2.0584 41 1 5.1643 -4.3488 -1.3348 42 1 1.6372 -2.1182 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591973890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:44 Heat of formation + Delta-G solvation = 52.753158 kcal Electronic energy + Delta-G solvation = -27318.025031 eV Core-core repulsion = 23649.393906 eV Total energy + Delta-G solvation = -3668.631125 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.28601 -39.12519 -37.46767 -36.11749 -35.28004 -32.67633 -32.17996 -32.09493 -30.55469 -29.01338 -28.30084 -26.95196 -25.18720 -24.27160 -22.93355 -21.97253 -20.48186 -19.75824 -19.42143 -17.96421 -17.27192 -16.86340 -15.59279 -15.34694 -15.03093 -14.84715 -14.68156 -14.35908 -14.10204 -13.95843 -13.71337 -13.56154 -13.40224 -13.01969 -12.84510 -12.59734 -12.48892 -12.32600 -12.07442 -11.76340 -11.60455 -11.37866 -11.36025 -11.28706 -11.14516 -10.82040 -10.60234 -10.48599 -10.16541 -9.90958 -9.69940 -9.32023 -8.75606 -8.64616 -8.37370 -8.17126 -8.08057 -6.26271 -4.33811 0.14281 0.57566 1.80165 2.56491 2.89904 3.23543 3.27280 3.31520 3.46856 3.87055 3.91417 4.05305 4.23323 4.29870 4.59736 4.69642 4.81749 4.89177 5.01742 5.06260 5.29662 5.33934 5.44717 5.52482 5.53775 5.63179 5.68006 5.79792 5.83900 5.90776 5.96882 6.00426 6.18205 6.19711 6.30751 6.40507 6.51611 6.59733 6.76647 6.83749 7.02928 7.32142 7.36949 7.46674 7.66254 7.74795 7.83016 8.05517 8.67212 9.33750 9.43765 10.81193 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.004136 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.042246 B = 6768.811346 C = 7869.086949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.103 4.103 3 C -0.082 4.082 4 C -0.107 4.107 5 C 0.146 3.854 6 N -0.484 5.484 7 C 0.185 3.815 8 C -0.137 4.137 9 C 0.238 3.762 10 N -0.378 5.378 11 C 0.230 3.770 12 N -0.489 5.489 13 C 0.039 3.961 14 C -0.127 4.127 15 C 0.266 3.734 16 O -0.580 6.580 17 C -0.535 4.535 18 H 0.059 0.941 19 C 0.075 3.925 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.052 3.948 26 C -0.092 4.092 27 C -0.056 4.056 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.165 0.835 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.380 0.620 39 H 0.268 0.732 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.262 17.661 2.862 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.103 4.103 3 C -0.102 4.102 4 C -0.125 4.125 5 C 0.025 3.975 6 N -0.191 5.191 7 C 0.009 3.991 8 C -0.145 4.145 9 C -0.077 4.077 10 N -0.053 5.053 11 C 0.122 3.878 12 N -0.210 5.210 13 C -0.086 4.086 14 C -0.166 4.166 15 C 0.225 3.775 16 O -0.388 6.388 17 C -0.573 4.573 18 H 0.077 0.923 19 C -0.128 4.128 20 N -0.534 5.534 21 Si 0.726 3.274 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.073 4.073 26 C -0.095 4.095 27 C -0.075 4.075 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.182 0.818 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.230 0.770 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.563 17.595 2.690 17.983 hybrid contribution 0.879 -1.920 -0.136 2.116 sum -1.684 15.675 2.553 15.970 Atomic orbital electron populations 1.20806 0.90676 1.02955 1.02574 1.19733 0.96690 0.92812 1.01076 1.20871 0.93926 0.97836 0.97568 1.20690 0.93464 0.96672 1.01715 1.18912 0.89337 0.92506 0.96768 1.68007 1.06501 1.29799 1.14839 1.22758 1.00255 0.85252 0.90831 1.17860 0.92930 0.90235 1.13499 1.25023 0.94523 0.92998 0.95178 1.81371 1.08869 1.08015 1.07038 1.19729 0.88297 0.92954 0.86796 1.62031 1.53240 1.00425 1.05333 1.23197 0.98436 0.95869 0.91142 1.22984 1.02632 0.90637 1.00365 1.19223 0.80694 0.88243 0.89334 1.86122 1.25906 1.41479 1.85304 1.21423 1.23547 0.91684 1.20670 0.92275 1.24935 0.94957 0.98429 0.94450 1.69698 1.36717 1.16823 1.30144 0.86540 0.80779 0.79940 0.80167 1.20044 1.21057 1.19994 1.23606 0.98458 0.93757 0.91478 1.18610 0.95047 0.91488 1.04350 1.21052 0.92124 0.98979 0.95328 0.90995 0.91094 0.91602 0.85342 0.84581 0.81810 0.94386 0.90605 0.91379 0.90861 0.77022 0.92215 0.89977 0.92319 0.83522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.99 36.00 0.36 -0.56 16 2 C -0.10 -1.10 5.85 -104.96 -0.61 -1.71 16 3 C -0.08 -0.78 9.59 -39.94 -0.38 -1.16 16 4 C -0.11 -1.16 9.97 -39.47 -0.39 -1.55 16 5 C 0.15 1.97 6.60 -84.83 -0.56 1.41 16 6 N -0.48 -6.55 10.30 -10.75 -0.11 -6.66 16 7 C 0.18 2.40 10.87 -17.15 -0.19 2.21 16 8 C -0.14 -2.11 5.26 -106.40 -0.56 -2.67 16 9 C 0.24 4.19 9.82 -22.47 -0.22 3.97 16 10 N -0.38 -7.53 18.34 41.83 0.77 -6.76 16 11 C 0.23 3.75 4.86 -83.13 -0.40 3.35 16 12 N -0.49 -9.05 4.46 -166.44 -0.74 -9.80 16 13 C 0.04 0.74 6.01 -2.75 -0.02 0.72 16 14 C -0.13 -2.88 5.26 -25.38 -0.13 -3.02 16 15 C 0.27 6.42 0.95 -89.91 -0.09 6.33 16 16 O -0.58 -14.58 13.09 -35.23 -0.46 -15.04 16 17 C -0.53 -14.29 8.15 -34.44 -0.28 -14.57 16 18 H 0.06 1.61 7.78 -52.49 -0.41 1.20 16 19 C 0.08 1.98 5.28 -17.82 -0.09 1.89 16 20 N -0.89 -23.62 11.00 55.43 0.61 -23.01 16 21 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.05 1.10 5.30 -1.89 -0.01 1.09 16 26 C -0.09 -1.34 5.75 -106.67 -0.61 -1.96 16 27 C -0.06 -0.74 9.17 -39.55 -0.36 -1.10 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 30 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.04 0.71 5.55 -51.93 -0.29 0.42 16 35 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 36 H 0.07 1.69 7.84 -51.93 -0.41 1.28 16 37 H 0.07 1.72 7.98 -51.92 -0.41 1.31 16 38 H 0.38 9.68 7.46 45.56 0.34 10.02 16 39 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 41 H 0.06 1.27 4.78 -51.93 -0.25 1.02 16 42 H 0.15 2.07 7.59 -52.49 -0.40 1.67 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -28.70 348.76 -8.60 -37.30 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -4.34 Total: 10.06 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -4.56 Total: -7.34 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.52 Total: -46.24 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.46 Total: -15.04 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.70 -8.60 -37.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591973890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.050 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds