Wall clock time and date at job start Tue Mar 31 2020 14:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39213 * 119.61861 * 2 1 4 4 C 1.36222 * 121.03203 * 179.97438 * 3 2 1 5 5 C 1.40450 * 119.81800 * 0.02562 * 4 3 2 6 6 N 1.34029 * 120.74980 * 180.02562 * 5 4 3 7 7 C 1.30861 * 121.99810 * 179.71095 * 6 5 4 8 8 C 1.40413 * 121.63593 * 0.56912 * 7 6 5 9 9 C 1.43204 * 120.35166 * 179.70150 * 8 7 6 10 10 N 7.17918 * 141.71679 * 179.97438 * 2 1 3 11 11 C 1.40242 * 119.29140 * 359.42709 * 8 7 6 12 12 N 1.37905 * 121.11701 * 180.29582 * 11 8 7 13 13 C 1.47907 * 110.99879 * 60.14487 * 12 11 8 14 14 C 1.53989 * 107.06057 * 214.15607 * 13 12 11 15 15 C 1.54595 * 105.14217 * 1.22304 * 14 13 12 16 16 O 1.42900 * 110.72811 * 263.60445 * 15 14 13 17 17 C 1.50699 * 110.72555 * 140.49375 * 15 14 13 18 18 H 1.08001 * 119.99987 * 241.45974 * 17 15 14 19 19 C 1.37879 * 119.99956 * 61.45875 * 17 15 14 20 20 N 1.31515 * 119.99930 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 119.99978 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47363 * 59.99952 * 21 19 17 23 23 H 1.48499 * 109.47033 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47209 * 300.00083 * 21 19 17 25 25 C 1.48533 * 111.00398 * 302.75201 * 12 11 8 26 26 C 1.41512 * 119.00759 * 0.02562 * 5 4 3 27 27 C 1.36298 * 119.62120 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.46766 * 90.00164 * 1 2 3 29 29 H 1.08999 * 109.47249 * 209.99932 * 1 2 3 30 30 H 1.08999 * 109.47202 * 330.00299 * 1 2 3 31 31 H 1.07999 * 119.48229 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.09070 * 179.97438 * 4 3 2 33 33 H 1.07998 * 119.17896 * 180.26917 * 7 6 5 34 34 H 1.08993 * 109.91698 * 333.51034 * 13 12 11 35 35 H 1.09008 * 109.91599 * 94.60271 * 13 12 11 36 36 H 1.08998 * 110.31252 * 120.14576 * 14 13 12 37 37 H 1.09009 * 110.30797 * 242.31104 * 14 13 12 38 38 H 0.96701 * 113.99758 * 298.54186 * 16 15 14 39 39 H 0.96993 * 120.00120 * 180.02562 * 20 19 17 40 40 H 1.09000 * 110.67084 * 278.15652 * 25 12 11 41 41 H 1.09001 * 110.66852 * 41.28465 * 25 12 11 42 42 H 1.08002 * 120.17343 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1949 1.2102 0.0000 4 6 3.5568 1.2438 0.0005 5 6 4.2850 0.0429 0.0005 6 7 5.6252 0.0541 0.0015 7 6 6.3279 -1.0498 0.0072 8 6 5.7150 -2.3130 0.0006 9 6 6.5109 -3.5035 0.0006 10 7 7.1423 -4.4479 0.0020 11 6 4.3151 -2.3964 -0.0001 12 7 3.6739 -3.6174 -0.0003 13 6 4.0354 -4.4062 1.1975 14 6 4.0597 -5.8863 0.7733 15 6 3.7226 -5.8796 -0.7355 16 8 2.3312 -6.1296 -0.9440 17 6 4.5607 -6.8913 -1.4737 18 1 5.2403 -6.5676 -2.2481 19 6 4.4599 -8.2302 -1.1604 20 7 3.6320 -8.6244 -0.2176 21 14 5.4993 -9.4843 -2.0749 22 1 6.9380 -9.1761 -1.8737 23 1 5.2072 -10.8438 -1.5537 24 1 5.1795 -9.4299 -3.5240 25 6 4.0911 -4.4376 -1.1663 26 6 3.5825 -1.1856 -0.0006 27 6 2.1806 -1.1849 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6403 2.1369 -0.0004 32 1 4.0750 2.1913 0.0001 33 1 7.4061 -0.9876 0.0122 34 1 5.0201 -4.1065 1.5561 35 1 3.2928 -4.2534 1.9807 36 1 5.0500 -6.3109 0.9378 37 1 3.3086 -6.4507 1.3262 38 1 2.0333 -6.9904 -0.6194 39 1 3.5614 -9.5663 0.0031 40 1 3.5354 -4.1487 -2.0584 41 1 5.1643 -4.3488 -1.3348 42 1 1.6372 -2.1182 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591973890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:43 Heat of formation + Delta-G solvation = 34.335911 kcal Electronic energy + Delta-G solvation = -27318.823663 eV Core-core repulsion = 23649.393906 eV Total energy + Delta-G solvation = -3669.429757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.46205 -40.48952 -38.62979 -37.53042 -36.93591 -34.23592 -33.97939 -33.07902 -31.62568 -30.50414 -30.09036 -27.89076 -26.88993 -25.59808 -23.88369 -23.28454 -21.82710 -21.62327 -20.56414 -19.39258 -18.63907 -18.38076 -17.02322 -16.86846 -16.61018 -16.13888 -15.89303 -15.81986 -15.34524 -15.20200 -14.98458 -14.71398 -14.60848 -14.43857 -14.22552 -13.99141 -13.94461 -13.69755 -13.48595 -13.30900 -13.01376 -12.97753 -12.66472 -12.55297 -12.48781 -12.34357 -12.22190 -12.17818 -11.91652 -11.36866 -11.08144 -10.81753 -10.66999 -10.22877 -9.81307 -9.73128 -9.07906 -8.29519 -6.43548 -0.98381 -0.41465 0.78891 1.34096 1.35222 1.42456 1.51055 1.52436 2.24046 2.30511 2.53047 2.62458 2.96114 3.02147 3.27573 3.48420 3.64715 3.78385 3.80371 3.93472 4.01764 4.03896 4.17932 4.22210 4.36154 4.43261 4.46140 4.60940 4.66634 4.83520 4.87999 4.94358 4.96701 5.00704 5.10376 5.26028 5.26945 5.36124 5.38515 5.40585 5.46176 5.65449 5.70618 5.90516 5.99903 6.09908 6.31781 6.58656 6.75180 7.27120 7.39196 8.76163 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.004136 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.042246 B = 6768.811346 C = 7869.086949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.068 4.068 4 C -0.106 4.106 5 C 0.132 3.868 6 N -0.479 5.479 7 C 0.189 3.811 8 C -0.144 4.144 9 C 0.259 3.741 10 N -0.428 5.428 11 C 0.206 3.794 12 N -0.481 5.481 13 C 0.047 3.953 14 C -0.114 4.114 15 C 0.254 3.746 16 O -0.584 6.584 17 C -0.558 4.558 18 H 0.044 0.956 19 C 0.038 3.962 20 N -0.906 5.906 21 Si 0.950 3.050 22 H -0.281 1.281 23 H -0.275 1.275 24 H -0.271 1.271 25 C 0.061 3.939 26 C -0.099 4.099 27 C -0.085 4.085 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.170 0.830 32 H 0.161 0.839 33 H 0.195 0.805 34 H 0.042 0.958 35 H 0.094 0.906 36 H 0.040 0.960 37 H 0.059 0.941 38 H 0.375 0.625 39 H 0.271 0.729 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.144 20.866 3.027 21.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.088 4.088 4 C -0.125 4.125 5 C 0.011 3.989 6 N -0.187 5.187 7 C 0.013 3.987 8 C -0.152 4.152 9 C -0.056 4.056 10 N -0.103 5.103 11 C 0.099 3.901 12 N -0.202 5.202 13 C -0.078 4.078 14 C -0.153 4.153 15 C 0.214 3.786 16 O -0.392 6.392 17 C -0.597 4.597 18 H 0.062 0.938 19 C -0.164 4.164 20 N -0.545 5.545 21 Si 0.776 3.224 22 H -0.207 1.207 23 H -0.199 1.199 24 H -0.196 1.196 25 C -0.065 4.065 26 C -0.102 4.102 27 C -0.104 4.104 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.188 0.812 32 H 0.178 0.822 33 H 0.212 0.788 34 H 0.060 0.940 35 H 0.112 0.888 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.224 0.776 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.452 20.818 2.858 21.295 hybrid contribution 1.028 -2.746 -0.188 2.938 sum -2.424 18.072 2.670 18.428 Atomic orbital electron populations 1.20899 0.88730 1.04062 1.03434 1.20107 0.98132 0.92343 0.98183 1.21319 0.93613 0.98822 0.95047 1.21043 0.94105 0.96496 1.00815 1.19305 0.89509 0.93078 0.97000 1.68095 1.06665 1.29543 1.14349 1.23118 1.01531 0.83948 0.90149 1.17957 0.92384 0.90357 1.14500 1.25368 0.93655 0.92812 0.93729 1.81377 1.10590 1.09347 1.09032 1.19795 0.88830 0.92423 0.89035 1.61902 1.53583 1.00837 1.03829 1.23079 0.99349 0.93538 0.91882 1.22691 1.00322 0.92895 0.99414 1.19332 0.79776 0.89391 0.90075 1.86114 1.26553 1.41098 1.85431 1.21635 1.24105 0.92945 1.20988 0.93762 1.25539 0.95906 0.99752 0.95155 1.69762 1.37084 1.17160 1.30463 0.85737 0.78974 0.78404 0.79301 1.20678 1.19934 1.19637 1.23349 0.97919 0.92766 0.92444 1.18689 0.95645 0.91089 1.04776 1.21006 0.91704 0.99623 0.98054 0.90104 0.91615 0.88958 0.81211 0.82179 0.78846 0.93978 0.88796 0.94134 0.92223 0.77567 0.92002 0.90575 0.92896 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.99 71.23 0.71 -0.76 16 2 C -0.09 -1.59 5.85 -20.08 -0.12 -1.71 16 3 C -0.07 -0.98 9.59 22.03 0.21 -0.77 16 4 C -0.11 -1.88 9.97 22.34 0.22 -1.66 16 5 C 0.13 3.25 6.60 40.15 0.27 3.52 16 6 N -0.48 -11.87 10.30 -187.93 -1.93 -13.80 16 7 C 0.19 4.60 10.87 85.37 0.93 5.53 16 8 C -0.14 -4.41 5.26 -21.02 -0.11 -4.52 16 9 C 0.26 9.31 9.82 88.33 0.87 10.18 16 10 N -0.43 -17.69 18.34 19.00 0.35 -17.35 16 11 C 0.21 6.73 4.86 39.48 0.19 6.92 16 12 N -0.48 -18.16 4.46 -680.50 -3.04 -21.19 16 13 C 0.05 1.83 6.01 86.44 0.52 2.35 16 14 C -0.11 -5.39 5.26 31.47 0.17 -5.22 16 15 C 0.25 12.77 0.95 -10.33 -0.01 12.76 16 16 O -0.58 -30.34 13.09 -148.98 -1.95 -32.29 16 17 C -0.56 -30.96 8.15 25.60 0.21 -30.75 16 18 H 0.04 2.52 7.78 -2.91 -0.02 2.49 16 19 C 0.04 2.05 5.28 84.65 0.45 2.50 16 20 N -0.91 -48.89 11.00 21.45 0.24 -48.65 16 21 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 25 C 0.06 2.69 5.30 86.65 0.46 3.14 16 26 C -0.10 -2.79 5.75 -21.19 -0.12 -2.91 16 27 C -0.08 -2.15 9.17 22.29 0.20 -1.95 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.94 8.07 -2.39 -0.02 0.92 16 30 H 0.09 0.73 8.08 -2.39 -0.02 0.71 16 31 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 32 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 34 H 0.04 1.60 5.55 -2.39 -0.01 1.58 16 35 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 36 H 0.04 2.10 7.84 -2.39 -0.02 2.08 16 37 H 0.06 2.91 7.98 -2.38 -0.02 2.89 16 38 H 0.38 19.80 7.46 -74.06 -0.55 19.24 16 39 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 40 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.05 2.39 4.78 -2.39 -0.01 2.37 16 42 H 0.13 3.69 7.59 -2.91 -0.02 3.67 16 Total: -1.00 -64.21 348.76 1.26 -62.95 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.52 Total: 27.77 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 5.04 Total: -3.35 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -4.39 Total: -100.99 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -1.95 Total: -32.29 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -64.21 1.26 -62.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591973890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.291 kcal (2) G-P(sol) polarization free energy of solvation -64.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds