Wall clock time and date at job start Tue Mar 31 2020 14:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38853 * 120.94953 * 2 1 4 4 C 1.43198 * 120.31265 * 0.02562 * 3 2 1 5 5 N 3.48158 * 81.40068 * 0.02562 * 2 1 3 6 6 C 1.41517 * 119.37608 * 180.23985 * 3 2 1 7 7 N 1.38290 * 119.34442 * 179.74586 * 6 3 2 8 8 C 1.48720 * 111.01723 * 64.22044 * 7 6 3 9 9 C 1.54381 * 104.51692 * 158.96416 * 8 7 6 10 10 C 1.54257 * 105.14978 * 336.27274 * 9 8 7 11 11 O 1.42910 * 110.32027 * 241.04997 * 10 9 8 12 12 C 1.50695 * 110.32879 * 118.94622 * 10 9 8 13 13 H 1.07997 * 120.00075 * 241.45186 * 12 10 9 14 14 C 1.37884 * 119.99868 * 61.44756 * 12 10 9 15 15 N 1.31515 * 119.99923 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99830 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46990 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.46710 * 120.00229 * 16 14 12 19 19 H 1.48497 * 109.46876 * 239.99840 * 16 14 12 20 20 C 1.48567 * 110.99876 * 179.73057 * 7 6 3 21 21 N 1.31552 * 121.30487 * 359.47087 * 6 3 2 22 22 C 1.33823 * 121.65042 * 0.27183 * 21 6 3 23 23 C 1.40531 * 120.71594 * 179.97438 * 22 21 6 24 24 C 1.36148 * 119.82778 * 180.02562 * 23 22 21 25 25 C 1.39308 * 121.07362 * 0.02562 * 24 23 22 26 26 C 1.36167 * 120.82801 * 359.97438 * 25 24 23 27 27 C 1.40526 * 119.64609 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.46799 * 270.25800 * 1 2 3 29 29 H 1.08989 * 109.46660 * 30.25987 * 1 2 3 30 30 H 1.09001 * 109.46926 * 150.26196 * 1 2 3 31 31 H 1.09004 * 110.38960 * 40.24384 * 8 7 6 32 32 H 1.08996 * 110.50963 * 277.74826 * 8 7 6 33 33 H 1.09002 * 110.32526 * 217.32092 * 9 8 7 34 34 H 1.08998 * 110.32190 * 95.21733 * 9 8 7 35 35 H 0.96699 * 114.00154 * 298.54485 * 11 10 9 36 36 H 0.97005 * 119.99855 * 179.97438 * 15 14 12 37 37 H 1.08999 * 110.41133 * 82.17599 * 20 7 6 38 38 H 1.09001 * 110.41003 * 319.73995 * 20 7 6 39 39 H 1.07998 * 120.08686 * 0.02562 * 23 22 21 40 40 H 1.07997 * 119.46408 * 180.02562 * 24 23 22 41 41 H 1.07999 * 119.58947 * 179.97438 * 25 24 23 42 42 H 1.08002 * 120.18318 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2212 1.1908 0.0000 4 6 1.5327 2.4464 0.0006 5 7 0.9865 3.4424 0.0015 6 6 3.6358 1.1520 -0.0052 7 7 4.3463 2.3384 -0.0105 8 6 4.1070 3.1090 1.2387 9 6 5.3141 4.0662 1.3402 10 6 6.4330 3.3923 0.5196 11 8 7.5569 3.1057 1.3545 12 6 6.8467 4.2776 -0.6276 13 1 6.7300 3.9335 -1.6446 14 6 7.3740 5.5271 -0.3787 15 7 7.5165 5.9459 0.8598 16 14 7.8862 6.6249 -1.8007 17 1 7.6246 5.9261 -3.0846 18 1 7.1060 7.8876 -1.7570 19 1 9.3345 6.9338 -1.6908 20 6 5.8098 2.0825 -0.0088 21 7 4.2882 0.0097 0.0004 22 6 3.6473 -1.1651 0.0058 23 6 4.3641 -2.3738 0.0112 24 6 3.6935 -3.5587 0.0161 25 6 2.3010 -3.5969 0.0153 26 6 1.5714 -2.4472 0.0102 27 6 2.2302 -1.2059 0.0050 28 1 -0.3633 0.0046 1.0277 29 1 -0.3632 0.8876 -0.5178 30 1 -0.3633 -0.8923 -0.5098 31 1 4.0794 2.4396 2.0985 32 1 3.1782 3.6749 1.1664 33 1 5.6220 4.1784 2.3797 34 1 5.0640 5.0374 0.9132 35 1 7.9621 3.8889 1.7512 36 1 7.8878 6.8248 1.0349 37 1 6.1606 1.8753 -1.0198 38 1 6.0497 1.2522 0.6554 39 1 5.4440 -2.3629 0.0114 40 1 4.2503 -4.4841 0.0206 41 1 1.7936 -4.5503 0.0189 42 1 0.4922 -2.4889 0.0101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591974278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:41 Heat of formation + Delta-G solvation = 53.986927 kcal Electronic energy + Delta-G solvation = -26959.169106 eV Core-core repulsion = 23290.591481 eV Total energy + Delta-G solvation = -3668.577625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.24317 -39.04307 -37.24168 -36.24300 -35.05054 -34.23481 -32.11803 -31.06750 -30.59543 -28.86990 -28.28338 -27.75564 -24.91845 -24.38074 -23.10495 -21.46638 -20.63408 -19.74491 -19.40583 -17.73148 -17.29986 -17.05036 -15.89558 -15.43347 -15.24601 -14.83676 -14.70080 -14.30842 -14.22553 -13.92235 -13.56879 -13.40160 -13.31472 -13.13110 -13.02626 -12.78813 -12.44267 -12.32070 -12.19004 -11.77772 -11.70997 -11.57493 -11.50161 -11.23269 -11.07137 -10.75775 -10.53392 -10.38733 -10.25340 -10.02766 -9.57551 -9.23309 -9.07621 -8.58401 -8.46790 -8.17904 -7.85354 -6.18743 -4.24537 0.08190 0.61989 1.72638 2.52664 2.76680 3.25330 3.33890 3.38062 3.39402 3.73733 3.83002 4.03751 4.24394 4.32530 4.36272 4.66222 4.73559 4.83193 4.95561 5.06506 5.10792 5.19894 5.25218 5.39378 5.41538 5.59425 5.67615 5.71836 5.75438 5.84210 5.92661 6.03904 6.15881 6.19387 6.28796 6.31362 6.56235 6.66104 6.76819 6.81409 7.01204 7.31619 7.47709 7.53159 7.59839 7.82481 8.01785 8.17071 8.78515 9.39780 9.49320 10.88791 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.003788 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.012921 B = 7389.786642 C = 8313.753732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.046 3.954 3 C -0.093 4.093 4 C 0.269 3.731 5 N -0.410 5.410 6 C 0.386 3.614 7 N -0.449 5.449 8 C 0.042 3.958 9 C -0.121 4.121 10 C 0.248 3.752 11 O -0.590 6.590 12 C -0.521 4.521 13 H 0.064 0.936 14 C 0.067 3.933 15 N -0.899 5.899 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.066 3.934 21 N -0.514 5.514 22 C 0.184 3.816 23 C -0.105 4.105 24 C -0.086 4.086 25 C -0.137 4.137 26 C -0.078 4.078 27 C -0.137 4.137 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.383 0.617 36 H 0.266 0.734 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.388 -17.666 0.912 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.035 3.965 3 C -0.101 4.101 4 C -0.046 4.046 5 N -0.085 5.085 6 C 0.137 3.863 7 N -0.166 5.166 8 C -0.083 4.083 9 C -0.160 4.160 10 C 0.207 3.793 11 O -0.398 6.398 12 C -0.560 4.560 13 H 0.082 0.918 14 C -0.134 4.134 15 N -0.540 5.540 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.059 4.059 21 N -0.229 5.229 22 C 0.060 3.940 23 C -0.124 4.124 24 C -0.106 4.106 25 C -0.155 4.155 26 C -0.097 4.097 27 C -0.140 4.140 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.234 0.766 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.516 -16.270 0.374 20.530 hybrid contribution -0.003 0.605 -0.134 0.619 sum -12.519 -15.665 0.241 20.054 Atomic orbital electron populations 1.21002 0.89285 1.04204 1.03863 1.20370 0.96346 0.90354 0.89409 1.16391 0.91820 0.87609 1.14320 1.24985 0.93109 0.92470 0.94061 1.81223 1.09307 1.09498 1.08493 1.20205 0.88135 0.89954 0.87981 1.62044 1.09570 1.11115 1.33859 1.23366 1.01746 0.96092 0.87108 1.22951 0.93781 0.98762 1.00506 1.19288 0.83197 0.88761 0.88010 1.86099 1.48150 1.38446 1.67154 1.21680 1.41227 0.99905 0.93160 0.91809 1.25002 0.94814 0.97600 0.96018 1.69693 1.45603 1.20226 1.18431 0.86411 0.78146 0.80195 0.82530 1.19639 1.20971 1.20889 1.22969 0.82031 0.98556 1.02389 1.68237 1.38173 0.96661 1.19805 1.18864 0.89280 0.92144 0.93751 1.20843 1.00795 0.89927 1.00867 1.20944 0.94446 0.97939 0.97303 1.20833 0.94134 0.98331 1.02200 1.20972 0.99847 0.90975 0.97924 1.18470 0.93913 0.93484 1.08142 0.89228 0.90470 0.89667 0.93513 0.90741 0.92032 0.90066 0.76613 0.92428 0.89714 0.91483 0.84402 0.85339 0.85645 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 9.19 36.01 0.33 -0.70 16 2 C 0.05 0.55 5.98 -103.50 -0.62 -0.07 16 3 C -0.09 -1.42 5.64 -106.50 -0.60 -2.02 16 4 C 0.27 4.37 11.30 -22.48 -0.25 4.11 16 5 N -0.41 -7.20 18.20 41.83 0.76 -6.44 16 6 C 0.39 6.88 6.18 -155.51 -0.96 5.92 16 7 N -0.45 -9.19 5.05 -168.32 -0.85 -10.04 16 8 C 0.04 0.84 5.64 -2.09 -0.01 0.83 16 9 C -0.12 -2.81 5.55 -25.35 -0.14 -2.95 16 10 C 0.25 6.15 1.05 -90.39 -0.10 6.06 16 11 O -0.59 -15.18 12.94 -35.23 -0.46 -15.63 16 12 C -0.52 -14.11 8.10 -34.44 -0.28 -14.39 16 13 H 0.06 1.76 7.54 -52.49 -0.40 1.36 16 14 C 0.07 1.79 5.02 -17.82 -0.09 1.70 16 15 N -0.90 -24.00 10.81 55.43 0.60 -23.40 16 16 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.07 1.48 5.18 -2.18 -0.01 1.47 16 21 N -0.51 -8.84 8.29 -9.97 -0.08 -8.92 16 22 C 0.18 2.60 6.61 -84.79 -0.56 2.04 16 23 C -0.11 -1.22 9.97 -39.47 -0.39 -1.62 16 24 C -0.09 -0.75 9.94 -39.93 -0.40 -1.14 16 25 C -0.14 -1.06 9.96 -39.93 -0.40 -1.46 16 26 C -0.08 -0.68 9.31 -39.46 -0.37 -1.04 16 27 C -0.14 -1.63 5.74 -106.79 -0.61 -2.24 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.68 7.17 -51.94 -0.37 0.31 16 30 H 0.08 0.48 6.50 -51.93 -0.34 0.15 16 31 H 0.05 0.87 7.97 -51.93 -0.41 0.46 16 32 H 0.07 1.45 6.19 -51.93 -0.32 1.13 16 33 H 0.06 1.41 7.98 -51.93 -0.41 1.00 16 34 H 0.08 2.07 7.24 -51.93 -0.38 1.69 16 35 H 0.38 9.94 7.32 45.56 0.33 10.28 16 36 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.08 1.94 7.68 -51.93 -0.40 1.55 16 38 H 0.07 1.49 7.06 -51.93 -0.37 1.12 16 39 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.75 6.42 -52.49 -0.34 0.41 16 LS Contribution 346.19 15.07 5.22 5.22 Total: -1.00 -29.80 346.19 -9.52 -39.32 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -4.23 Total: 9.32 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -5.46 Total: -5.52 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.43 Total: -48.81 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.46 Total: -15.63 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.80 -9.52 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.307 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds