Wall clock time and date at job start Tue Mar 31 2020 14:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38853 * 120.94953 * 2 1 4 4 C 1.43198 * 120.31265 * 0.02562 * 3 2 1 5 5 N 3.48158 * 81.40068 * 0.02562 * 2 1 3 6 6 C 1.41517 * 119.37608 * 180.23985 * 3 2 1 7 7 N 1.38290 * 119.34442 * 179.74586 * 6 3 2 8 8 C 1.48720 * 111.01723 * 64.22044 * 7 6 3 9 9 C 1.54381 * 104.51692 * 158.96416 * 8 7 6 10 10 C 1.54257 * 105.14978 * 336.27274 * 9 8 7 11 11 O 1.42910 * 110.32027 * 241.04997 * 10 9 8 12 12 C 1.50695 * 110.32879 * 118.94622 * 10 9 8 13 13 H 1.07997 * 120.00075 * 241.45186 * 12 10 9 14 14 C 1.37884 * 119.99868 * 61.44756 * 12 10 9 15 15 N 1.31515 * 119.99923 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99830 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46990 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.46710 * 120.00229 * 16 14 12 19 19 H 1.48497 * 109.46876 * 239.99840 * 16 14 12 20 20 C 1.48567 * 110.99876 * 179.73057 * 7 6 3 21 21 N 1.31552 * 121.30487 * 359.47087 * 6 3 2 22 22 C 1.33823 * 121.65042 * 0.27183 * 21 6 3 23 23 C 1.40531 * 120.71594 * 179.97438 * 22 21 6 24 24 C 1.36148 * 119.82778 * 180.02562 * 23 22 21 25 25 C 1.39308 * 121.07362 * 0.02562 * 24 23 22 26 26 C 1.36167 * 120.82801 * 359.97438 * 25 24 23 27 27 C 1.40526 * 119.64609 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.46799 * 270.25800 * 1 2 3 29 29 H 1.08989 * 109.46660 * 30.25987 * 1 2 3 30 30 H 1.09001 * 109.46926 * 150.26196 * 1 2 3 31 31 H 1.09004 * 110.38960 * 40.24384 * 8 7 6 32 32 H 1.08996 * 110.50963 * 277.74826 * 8 7 6 33 33 H 1.09002 * 110.32526 * 217.32092 * 9 8 7 34 34 H 1.08998 * 110.32190 * 95.21733 * 9 8 7 35 35 H 0.96699 * 114.00154 * 298.54485 * 11 10 9 36 36 H 0.97005 * 119.99855 * 179.97438 * 15 14 12 37 37 H 1.08999 * 110.41133 * 82.17599 * 20 7 6 38 38 H 1.09001 * 110.41003 * 319.73995 * 20 7 6 39 39 H 1.07998 * 120.08686 * 0.02562 * 23 22 21 40 40 H 1.07997 * 119.46408 * 180.02562 * 24 23 22 41 41 H 1.07999 * 119.58947 * 179.97438 * 25 24 23 42 42 H 1.08002 * 120.18318 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2212 1.1908 0.0000 4 6 1.5327 2.4464 0.0006 5 7 0.9865 3.4424 0.0015 6 6 3.6358 1.1520 -0.0052 7 7 4.3463 2.3384 -0.0105 8 6 4.1070 3.1090 1.2387 9 6 5.3141 4.0662 1.3402 10 6 6.4330 3.3923 0.5196 11 8 7.5569 3.1057 1.3545 12 6 6.8467 4.2776 -0.6276 13 1 6.7300 3.9335 -1.6446 14 6 7.3740 5.5271 -0.3787 15 7 7.5165 5.9459 0.8598 16 14 7.8862 6.6249 -1.8007 17 1 7.6246 5.9261 -3.0846 18 1 7.1060 7.8876 -1.7570 19 1 9.3345 6.9338 -1.6908 20 6 5.8098 2.0825 -0.0088 21 7 4.2882 0.0097 0.0004 22 6 3.6473 -1.1651 0.0058 23 6 4.3641 -2.3738 0.0112 24 6 3.6935 -3.5587 0.0161 25 6 2.3010 -3.5969 0.0153 26 6 1.5714 -2.4472 0.0102 27 6 2.2302 -1.2059 0.0050 28 1 -0.3633 0.0046 1.0277 29 1 -0.3632 0.8876 -0.5178 30 1 -0.3633 -0.8923 -0.5098 31 1 4.0794 2.4396 2.0985 32 1 3.1782 3.6749 1.1664 33 1 5.6220 4.1784 2.3797 34 1 5.0640 5.0374 0.9132 35 1 7.9621 3.8889 1.7512 36 1 7.8878 6.8248 1.0349 37 1 6.1606 1.8753 -1.0198 38 1 6.0497 1.2522 0.6554 39 1 5.4440 -2.3629 0.0114 40 1 4.2503 -4.4841 0.0206 41 1 1.7936 -4.5503 0.0189 42 1 0.4922 -2.4889 0.0101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591974278.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:40 Heat of formation + Delta-G solvation = 34.698245 kcal Electronic energy + Delta-G solvation = -26960.005526 eV Core-core repulsion = 23290.591481 eV Total energy + Delta-G solvation = -3669.414045 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.33698 -40.43090 -38.51515 -37.54188 -36.43995 -35.44392 -34.20232 -32.41574 -31.49047 -30.23566 -29.75225 -28.93954 -26.77071 -25.34510 -24.33770 -22.71790 -21.95823 -21.25694 -20.61372 -19.12491 -18.82649 -18.52224 -17.00227 -16.84154 -16.57577 -16.48098 -15.92851 -15.77660 -15.30790 -15.04515 -14.93194 -14.57843 -14.52262 -14.35384 -14.19512 -14.00244 -13.90152 -13.76539 -13.43257 -13.25156 -13.12765 -13.00521 -12.69020 -12.49111 -12.45774 -12.38019 -12.34310 -12.22526 -12.02275 -11.15756 -11.08224 -10.70107 -10.64119 -10.43425 -10.21420 -9.46597 -8.98597 -8.24111 -6.37011 -0.82803 -0.40700 0.87012 1.36580 1.39626 1.50535 1.50768 1.53755 2.24940 2.37371 2.46956 2.70005 3.00042 3.07872 3.24075 3.46409 3.60411 3.82580 3.89518 3.94916 4.01824 4.12576 4.20645 4.28543 4.33268 4.41015 4.52391 4.58598 4.65328 4.66710 4.82935 4.88832 4.92677 5.03926 5.08029 5.12894 5.13545 5.38600 5.43797 5.50680 5.55864 5.57180 5.72706 5.90554 6.02604 6.14735 6.36236 6.66762 6.88177 7.31225 7.40378 8.82171 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.003788 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.012921 B = 7389.786642 C = 8313.753732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.072 3.928 3 C -0.123 4.123 4 C 0.286 3.714 5 N -0.446 5.446 6 C 0.361 3.639 7 N -0.463 5.463 8 C 0.055 3.945 9 C -0.111 4.111 10 C 0.235 3.765 11 O -0.596 6.596 12 C -0.546 4.546 13 H 0.049 0.951 14 C 0.030 3.970 15 N -0.911 5.911 16 Si 0.957 3.043 17 H -0.275 1.275 18 H -0.280 1.280 19 H -0.274 1.274 20 C 0.084 3.916 21 N -0.542 5.542 22 C 0.153 3.847 23 C -0.136 4.136 24 C -0.064 4.064 25 C -0.125 4.125 26 C -0.071 4.071 27 C -0.143 4.143 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.379 0.621 36 H 0.269 0.731 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.129 0.871 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.996 -21.207 0.702 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.061 3.939 3 C -0.131 4.131 4 C -0.028 4.028 5 N -0.122 5.122 6 C 0.113 3.887 7 N -0.181 5.181 8 C -0.070 4.070 9 C -0.150 4.150 10 C 0.195 3.805 11 O -0.404 6.404 12 C -0.584 4.584 13 H 0.067 0.933 14 C -0.171 4.171 15 N -0.551 5.551 16 Si 0.783 3.217 17 H -0.200 1.200 18 H -0.205 1.205 19 H -0.200 1.200 20 C -0.042 4.042 21 N -0.257 5.257 22 C 0.031 3.969 23 C -0.155 4.155 24 C -0.084 4.084 25 C -0.143 4.143 26 C -0.090 4.090 27 C -0.146 4.146 28 H 0.129 0.871 29 H 0.087 0.913 30 H 0.139 0.861 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.229 0.771 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.147 0.853 40 H 0.179 0.821 41 H 0.186 0.814 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -15.140 -19.855 0.166 24.970 hybrid contribution 0.771 1.344 -0.054 1.550 sum -14.370 -18.511 0.112 23.434 Atomic orbital electron populations 1.21200 0.86038 1.05590 1.05523 1.20833 0.98286 0.89012 0.85750 1.16375 0.90720 0.88386 1.17645 1.25157 0.92363 0.92381 0.92929 1.81218 1.10564 1.10156 1.10270 1.20101 0.89008 0.89219 0.90379 1.62059 1.08164 1.13377 1.34471 1.23160 1.00160 0.95669 0.88031 1.22689 0.94747 0.98027 0.99549 1.19465 0.83266 0.90051 0.87735 1.86091 1.48762 1.38267 1.67282 1.21836 1.42437 1.01022 0.93132 0.93287 1.25634 0.94664 0.98493 0.98265 1.69759 1.45365 1.20511 1.19484 0.85526 0.78077 0.78434 0.79690 1.19991 1.20538 1.19980 1.22596 0.83794 0.96937 1.00910 1.68088 1.39625 0.97600 1.20372 1.19299 0.91001 0.91652 0.94955 1.20959 1.00790 0.90433 1.03347 1.21408 0.95496 0.97795 0.93706 1.21382 0.93574 0.99919 0.99408 1.21436 1.01904 0.89427 0.96204 1.18744 0.92965 0.95033 1.07844 0.87074 0.91252 0.86110 0.92446 0.90349 0.92419 0.92863 0.77117 0.92110 0.91376 0.92002 0.85323 0.82145 0.81392 0.81171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.19 71.24 0.65 -0.91 16 2 C 0.07 1.55 5.98 -19.14 -0.11 1.44 16 3 C -0.12 -3.76 5.64 -21.08 -0.12 -3.88 16 4 C 0.29 9.44 11.30 88.33 1.00 10.43 16 5 N -0.45 -16.02 18.20 19.00 0.35 -15.67 16 6 C 0.36 13.39 6.18 134.15 0.83 14.22 16 7 N -0.46 -20.02 5.05 -686.45 -3.47 -23.49 16 8 C 0.06 2.33 5.64 86.42 0.49 2.81 16 9 C -0.11 -5.46 5.55 31.49 0.17 -5.28 16 10 C 0.23 12.32 1.05 -10.65 -0.01 12.31 16 11 O -0.60 -32.17 12.94 -148.98 -1.93 -34.10 16 12 C -0.55 -31.00 8.10 25.60 0.21 -30.79 16 13 H 0.05 2.85 7.54 -2.91 -0.02 2.83 16 14 C 0.03 1.63 5.02 84.66 0.43 2.05 16 15 N -0.91 -50.00 10.81 21.45 0.23 -49.77 16 16 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 C 0.08 4.01 5.18 86.45 0.45 4.46 16 21 N -0.54 -19.38 8.29 -185.45 -1.54 -20.92 16 22 C 0.15 4.26 6.61 40.27 0.27 4.53 16 23 C -0.14 -3.00 9.97 22.34 0.22 -2.78 16 24 C -0.06 -0.85 9.94 22.04 0.22 -0.63 16 25 C -0.13 -1.18 9.96 22.05 0.22 -0.96 16 26 C -0.07 -0.83 9.31 22.35 0.21 -0.62 16 27 C -0.14 -3.00 5.74 -21.27 -0.12 -3.13 16 28 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.04 7.17 -2.39 -0.02 1.02 16 30 H 0.12 0.64 6.50 -2.39 -0.02 0.63 16 31 H 0.06 2.24 7.97 -2.38 -0.02 2.22 16 32 H 0.08 3.21 6.19 -2.39 -0.01 3.19 16 33 H 0.06 2.79 7.98 -2.39 -0.02 2.77 16 34 H 0.05 2.86 7.24 -2.39 -0.02 2.85 16 35 H 0.38 20.60 7.32 -74.06 -0.54 20.06 16 36 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16 37 H 0.07 3.38 7.68 -2.39 -0.02 3.36 16 38 H 0.06 2.93 7.06 -2.39 -0.02 2.91 16 39 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 40 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 42 H 0.17 0.66 6.42 -2.91 -0.02 0.64 16 Total: -1.00 -70.19 346.19 1.20 -68.98 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.54 Total: 25.31 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 4.99 Total: 3.27 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -4.43 Total: -109.85 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -1.93 Total: -34.10 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -70.19 1.20 -68.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591974278.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.681 kcal (2) G-P(sol) polarization free energy of solvation -70.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds