Wall clock time and date at job start Tue Mar 31 2020 14:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36250 * 120.09188 * 2 1 4 4 C 1.39173 * 121.02899 * 180.02562 * 3 2 1 5 5 C 1.36338 * 120.76499 * 0.02562 * 4 3 2 6 6 C 1.40153 * 119.64651 * 359.95620 * 5 4 3 7 7 C 1.40408 * 120.08890 * 180.02562 * 2 1 3 8 8 N 1.34037 * 120.75567 * 359.96179 * 7 2 1 9 9 C 1.30866 * 121.99825 * 180.02562 * 8 7 2 10 10 C 1.40418 * 121.64270 * 359.97438 * 9 8 7 11 11 C 1.43198 * 120.35224 * 180.02562 * 10 9 8 12 12 N 6.72668 * 119.11274 * 180.02562 * 2 1 3 13 13 C 1.40233 * 119.29481 * 0.29774 * 10 9 8 14 14 N 1.37906 * 121.12048 * 179.72202 * 13 10 9 15 15 C 1.47904 * 110.99829 * 60.14271 * 14 13 10 16 16 C 1.53993 * 107.05750 * 214.15873 * 15 14 13 17 17 C 1.54591 * 105.14411 * 1.22234 * 16 15 14 18 18 O 1.42895 * 110.72743 * 263.60421 * 17 16 15 19 19 C 1.50699 * 110.72613 * 140.49234 * 17 16 15 20 20 H 1.08001 * 119.99999 * 238.72251 * 19 17 16 21 21 C 1.37879 * 120.00144 * 58.72175 * 19 17 16 22 22 N 1.31514 * 119.99468 * 4.82867 * 21 19 17 23 23 Si 1.86795 * 120.00311 * 184.82606 * 21 19 17 24 24 H 1.48501 * 109.46657 * 85.00065 * 23 21 19 25 25 H 1.48497 * 109.47263 * 204.99874 * 23 21 19 26 26 H 1.48494 * 109.47383 * 325.00295 * 23 21 19 27 27 C 1.48536 * 111.00109 * 302.75139 * 14 13 10 28 28 H 1.09000 * 109.47118 * 269.97702 * 1 2 3 29 29 H 1.08997 * 109.47034 * 29.97881 * 1 2 3 30 30 H 1.09004 * 109.47145 * 149.98123 * 1 2 3 31 31 H 1.08001 * 119.48582 * 0.04603 * 3 2 1 32 32 H 1.07999 * 119.61475 * 180.02562 * 4 3 2 33 33 H 1.08002 * 120.17490 * 179.97438 * 5 4 3 34 34 H 1.07992 * 119.17758 * 180.02562 * 9 8 7 35 35 H 1.09003 * 109.91828 * 333.51192 * 15 14 13 36 36 H 1.09003 * 109.92065 * 94.60512 * 15 14 13 37 37 H 1.09007 * 110.31003 * 120.14430 * 16 15 14 38 38 H 1.09002 * 110.31065 * 242.30316 * 16 15 14 39 39 H 0.96700 * 113.99943 * 298.54175 * 18 17 16 40 40 H 0.97004 * 120.00232 * 180.02562 * 22 21 19 41 41 H 1.09006 * 110.66047 * 278.15162 * 27 14 13 42 42 H 1.08994 * 110.66960 * 41.28010 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.1789 0.0000 4 6 3.5817 1.2016 -0.0005 5 6 4.2981 0.0417 -0.0016 6 6 3.6261 -1.1882 -0.0012 7 6 2.2109 -1.2149 -0.0005 8 7 1.5579 -2.3854 -0.0003 9 6 2.1893 -3.5317 -0.0003 10 6 3.5918 -3.6002 -0.0011 11 6 4.2542 -4.8697 -0.0016 12 7 4.7797 -5.8769 -0.0026 13 6 4.3368 -2.4122 0.0045 14 7 5.7157 -2.4355 0.0096 15 6 6.2385 -3.1291 -1.1875 16 6 7.5238 -3.8615 -0.7600 17 6 7.6742 -3.5653 0.7498 18 8 8.5606 -2.4650 0.9635 19 6 8.1569 -4.7875 1.4876 20 1 7.5644 -5.2036 2.2890 21 6 9.3550 -5.3745 1.1396 22 7 10.1216 -4.8146 0.2295 23 14 9.8891 -6.9650 1.9606 24 1 9.2807 -8.1179 1.2492 25 1 11.3690 -7.0763 1.9086 26 1 9.4422 -6.9655 3.3767 27 6 6.2308 -3.1973 1.1761 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6432 2.1102 0.0008 32 1 4.0999 2.1491 -0.0001 33 1 5.3778 0.0705 -0.0024 34 1 1.6174 -4.4478 -0.0005 35 1 5.5043 -3.8486 -1.5501 36 1 6.4636 -2.4030 -1.9687 37 1 7.4216 -4.9339 -0.9268 38 1 8.3814 -3.4726 -1.3091 39 1 9.4599 -2.6162 0.6419 40 1 10.9643 -5.2277 -0.0157 41 1 6.2409 -2.5727 2.0693 42 1 5.6373 -4.0965 1.3409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591977229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:38 Heat of formation + Delta-G solvation = 35.876433 kcal Electronic energy + Delta-G solvation = -27327.589687 eV Core-core repulsion = 23658.226732 eV Total energy + Delta-G solvation = -3669.362955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.47722 -40.52745 -38.49480 -37.39039 -36.96797 -34.52807 -34.24966 -32.50585 -31.93181 -30.19349 -30.05959 -27.76117 -26.94031 -25.61627 -24.69069 -22.79654 -21.64461 -21.48316 -20.55053 -19.32975 -18.61184 -18.55393 -17.04503 -16.92587 -16.63797 -16.22289 -15.90574 -15.88757 -15.42241 -15.20536 -14.86725 -14.72391 -14.48224 -14.41291 -14.24259 -13.88961 -13.73921 -13.57267 -13.46020 -13.31111 -13.04578 -13.00153 -12.65713 -12.54768 -12.51622 -12.43709 -12.33632 -12.22973 -11.90225 -11.33028 -10.94303 -10.77780 -10.64943 -10.22611 -9.84514 -9.79896 -9.00969 -8.30385 -6.43649 -0.98142 -0.40006 0.76814 1.32369 1.34942 1.42822 1.51222 1.56133 2.25755 2.30070 2.52451 2.62708 2.95985 3.02131 3.26870 3.48632 3.62048 3.80194 3.83064 3.94522 4.01860 4.05320 4.17923 4.25675 4.38956 4.44764 4.49557 4.59508 4.70511 4.81386 4.83715 4.97054 4.99402 5.00359 5.03920 5.26826 5.35967 5.40961 5.44042 5.45233 5.54362 5.56689 5.70336 5.93880 6.00239 6.10083 6.31939 6.58753 6.75342 7.26449 7.40590 8.75559 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021774 B = 0.003874 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.647424 B = 7225.454443 C = 8045.541746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.084 4.084 3 C -0.078 4.078 4 C -0.111 4.111 5 C -0.087 4.087 6 C -0.101 4.101 7 C 0.135 3.865 8 N -0.475 5.475 9 C 0.189 3.811 10 C -0.144 4.144 11 C 0.259 3.741 12 N -0.428 5.428 13 C 0.207 3.793 14 N -0.481 5.481 15 C 0.047 3.953 16 C -0.115 4.115 17 C 0.253 3.747 18 O -0.584 6.584 19 C -0.558 4.558 20 H 0.044 0.956 21 C 0.038 3.962 22 N -0.904 5.904 23 Si 0.949 3.051 24 H -0.281 1.281 25 H -0.274 1.274 26 H -0.273 1.273 27 C 0.061 3.939 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.168 0.832 32 H 0.158 0.842 33 H 0.132 0.868 34 H 0.195 0.805 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.040 0.960 38 H 0.059 0.941 39 H 0.375 0.625 40 H 0.270 0.730 41 H 0.076 0.924 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.816 12.640 -3.156 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.085 4.085 3 C -0.097 4.097 4 C -0.129 4.129 5 C -0.106 4.106 6 C -0.104 4.104 7 C 0.015 3.985 8 N -0.182 5.182 9 C 0.013 3.987 10 C -0.152 4.152 11 C -0.056 4.056 12 N -0.104 5.104 13 C 0.100 3.900 14 N -0.201 5.201 15 C -0.078 4.078 16 C -0.154 4.154 17 C 0.213 3.787 18 O -0.392 6.392 19 C -0.596 4.596 20 H 0.062 0.938 21 C -0.163 4.163 22 N -0.543 5.543 23 Si 0.775 3.225 24 H -0.207 1.207 25 H -0.198 1.198 26 H -0.198 1.198 27 C -0.064 4.064 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.186 0.814 32 H 0.176 0.824 33 H 0.150 0.850 34 H 0.211 0.789 35 H 0.060 0.940 36 H 0.113 0.887 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.224 0.776 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.118 12.005 -2.986 21.939 hybrid contribution 2.009 -2.193 0.147 2.978 sum -16.109 9.812 -2.839 19.075 Atomic orbital electron populations 1.20691 0.88241 1.03779 1.03110 1.19879 0.98030 0.90060 1.00510 1.21317 0.94087 0.98544 0.95794 1.21339 0.94495 0.98783 0.98282 1.21163 1.01131 0.90939 0.97348 1.18710 0.93622 0.93186 1.04869 1.19108 0.88793 0.93352 0.97293 1.68059 1.38672 0.97248 1.14233 1.23131 0.87879 0.97594 0.90130 1.17962 0.95986 0.86772 1.14510 1.25372 0.93468 0.93008 0.93725 1.81375 1.06977 1.12972 1.09039 1.19796 0.89622 0.91621 0.88913 1.61904 1.03752 1.50648 1.03837 1.23075 0.96489 0.96359 0.91882 1.22685 0.95380 0.97929 0.99367 1.19356 0.85394 0.83858 0.90085 1.86114 1.24893 1.42750 1.85453 1.21641 1.06336 1.12480 1.19162 0.93783 1.25533 0.95974 0.99761 0.95073 1.69769 1.12407 1.40290 1.31828 0.85707 0.77607 0.80168 0.79004 1.20697 1.19845 1.19831 1.23341 0.95600 0.95047 0.92425 0.90543 0.89281 0.91341 0.81433 0.82401 0.84980 0.78863 0.93987 0.88744 0.94138 0.92193 0.77569 0.92015 0.90580 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.79 71.24 0.70 -0.68 16 2 C -0.08 -1.57 5.89 -19.80 -0.12 -1.69 16 3 C -0.08 -1.14 9.58 22.03 0.21 -0.92 16 4 C -0.11 -1.91 9.96 22.05 0.22 -1.69 16 5 C -0.09 -2.14 9.56 22.29 0.21 -1.93 16 6 C -0.10 -2.83 5.75 -21.19 -0.12 -2.95 16 7 C 0.14 3.37 6.59 40.15 0.26 3.63 16 8 N -0.48 -11.66 9.34 -187.93 -1.76 -13.41 16 9 C 0.19 4.57 10.87 85.37 0.93 5.50 16 10 C -0.14 -4.39 5.26 -21.02 -0.11 -4.50 16 11 C 0.26 9.27 9.82 88.33 0.87 10.14 16 12 N -0.43 -17.63 18.34 19.00 0.35 -17.28 16 13 C 0.21 6.73 4.86 39.48 0.19 6.92 16 14 N -0.48 -18.05 4.46 -680.49 -3.04 -21.09 16 15 C 0.05 1.83 6.01 86.45 0.52 2.35 16 16 C -0.11 -5.39 5.22 31.47 0.16 -5.23 16 17 C 0.25 12.69 0.95 -10.34 -0.01 12.68 16 18 O -0.58 -30.29 13.09 -148.98 -1.95 -32.24 16 19 C -0.56 -30.91 8.16 25.60 0.21 -30.70 16 20 H 0.04 2.51 7.79 -2.91 -0.02 2.49 16 21 C 0.04 2.07 5.24 84.66 0.44 2.51 16 22 N -0.90 -48.75 11.02 21.45 0.24 -48.52 16 23 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 27 C 0.06 2.70 5.30 86.65 0.46 3.16 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 0.75 8.08 -2.39 -0.02 0.73 16 30 H 0.07 1.08 7.54 -2.38 -0.02 1.06 16 31 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 32 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.13 3.62 7.59 -2.91 -0.02 3.59 16 34 H 0.19 3.39 8.06 -2.91 -0.02 3.36 16 35 H 0.04 1.59 5.55 -2.39 -0.01 1.57 16 36 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.04 2.09 7.84 -2.38 -0.02 2.07 16 38 H 0.06 2.92 7.97 -2.39 -0.02 2.90 16 39 H 0.38 19.78 7.51 -74.06 -0.56 19.22 16 40 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 41 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 42 H 0.05 2.38 4.78 -2.39 -0.01 2.37 16 Total: -1.00 -64.05 347.49 1.42 -62.63 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.52 Total: 27.30 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 5.03 Total: -3.41 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -4.21 Total: -100.30 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.95 Total: -32.24 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -64.05 1.42 -62.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.502 kcal (2) G-P(sol) polarization free energy of solvation -64.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds