Wall clock time and date at job start Tue Mar 31 2020 14:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86809 * 119.99805 * 2 1 4 4 H 1.48504 * 109.46953 * 239.99640 * 3 2 1 5 5 H 1.48490 * 109.46853 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47406 * 119.99591 * 3 2 1 7 7 C 1.39905 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00157 * 175.57519 * 7 2 1 9 9 C 1.41153 * 119.99803 * 355.57720 * 7 2 1 10 10 C 1.40868 * 120.15940 * 214.77510 * 9 7 2 11 11 C 1.36383 * 119.82504 * 180.02562 * 10 9 7 12 12 C 1.39472 * 120.16758 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.83136 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.00059 * 35.29289 * 13 12 11 15 15 O 1.21283 * 119.99820 * 355.70064 * 14 13 12 16 16 C 1.50698 * 119.99747 * 175.70838 * 14 13 12 17 17 H 1.09003 * 109.79823 * 60.49952 * 16 14 13 18 18 C 1.53307 * 109.62999 * 180.99362 * 16 14 13 19 19 C 1.52807 * 108.52741 * 189.43057 * 18 16 14 20 20 C 1.50437 * 110.45213 * 308.92214 * 19 18 16 21 21 N 1.32890 * 118.54495 * 197.63007 * 20 19 18 22 22 C 1.31608 * 121.06504 * 180.55788 * 21 20 19 23 23 N 1.31819 * 121.66932 * 0.02562 * 22 21 20 24 24 C 1.32188 * 120.64262 * 359.84745 * 23 22 21 25 25 C 1.37771 * 122.57001 * 17.95664 * 20 19 18 26 26 C 1.50330 * 122.79769 * 359.01319 * 25 20 19 27 27 C 1.39481 * 120.33728 * 0.25009 * 12 11 10 28 28 C 1.36381 * 120.16417 * 359.48720 * 27 12 11 29 29 H 0.97003 * 120.00364 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.09485 * 0.04153 * 10 9 7 31 31 H 1.08004 * 119.91455 * 179.97438 * 11 10 9 32 32 H 0.97002 * 119.99993 * 215.28539 * 13 12 11 33 33 H 1.08998 * 109.62809 * 309.14694 * 18 16 14 34 34 H 1.09008 * 109.62648 * 69.72442 * 18 16 14 35 35 H 1.09011 * 109.30660 * 188.62303 * 19 18 16 36 36 H 1.09001 * 109.30447 * 69.22619 * 19 18 16 37 37 H 1.07998 * 119.16542 * 180.02562 * 22 21 20 38 38 H 1.07994 * 120.36959 * 180.02562 * 24 23 22 39 39 H 1.08997 * 109.31158 * 138.09524 * 26 25 20 40 40 H 1.09002 * 109.30882 * 257.68948 * 26 25 20 41 41 H 1.08001 * 119.92145 * 179.75010 * 27 12 11 42 42 H 1.07997 * 120.08302 * 180.25607 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2776 2.7464 -0.0006 6 1 3.0963 1.6966 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0859 -1.2129 -0.0716 9 6 1.3057 -2.4321 0.0954 10 6 1.8649 -3.5180 0.7972 11 6 1.1804 -4.6944 0.8840 12 6 -0.0700 -4.8240 0.2798 13 7 -0.7625 -6.0284 0.3725 14 6 -0.6810 -6.7680 1.4963 15 8 0.0561 -6.4244 2.3961 16 6 -1.5055 -8.0217 1.6347 17 1 -1.2393 -8.7275 0.8478 18 6 -1.2491 -8.6582 3.0056 19 6 -1.9055 -10.0378 3.0309 20 6 -3.3409 -9.9451 2.5903 21 7 -4.1604 -10.9502 2.8806 22 6 -5.4229 -10.9259 2.5096 23 7 -5.9273 -9.9102 1.8375 24 6 -5.1724 -8.8739 1.5156 25 6 -3.8346 -8.8639 1.8937 26 6 -2.9901 -7.6740 1.5317 27 6 -0.6276 -3.7551 -0.4216 28 6 0.0426 -2.5709 -0.5126 29 1 -0.4851 0.8400 -0.0004 30 1 2.8331 -3.4192 1.2654 31 1 1.6080 -5.5280 1.4214 32 1 -1.3038 -6.3352 -0.3718 33 1 -0.1759 -8.7602 3.1669 34 1 -1.6817 -8.0325 3.7864 35 1 -1.8646 -10.4378 4.0442 36 1 -1.3651 -10.7063 2.3607 37 1 -6.0618 -11.7591 2.7622 38 1 -5.5903 -8.0440 0.9652 39 1 -3.2184 -7.3670 0.5111 40 1 -3.2132 -6.8531 2.2133 41 1 -1.5945 -3.8642 -0.8903 42 1 -0.3923 -1.7428 -1.0525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592578572.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:11 Heat of formation + Delta-G solvation = 20.639837 kcal Electronic energy + Delta-G solvation = -25678.571108 eV Core-core repulsion = 22008.547445 eV Total energy + Delta-G solvation = -3670.023663 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.65283 -39.95400 -37.70921 -36.58048 -34.53687 -34.32551 -32.96236 -31.68662 -30.69563 -29.60164 -28.77846 -25.82018 -25.05789 -24.14217 -23.28610 -21.92936 -21.10101 -20.35800 -19.47293 -18.05771 -17.39357 -17.21333 -16.90877 -16.25665 -15.60331 -15.25011 -15.16589 -14.63258 -14.18128 -14.10315 -14.06680 -13.85559 -13.66238 -13.29534 -13.00075 -12.71326 -12.37599 -12.16798 -12.08259 -11.72145 -11.43287 -11.34171 -11.21668 -11.12854 -11.07199 -10.98277 -10.75230 -10.64916 -10.05044 -9.53141 -9.50297 -9.48470 -9.44762 -9.13573 -8.90575 -7.58487 -6.90428 -6.64762 -4.37440 0.60793 0.75287 2.49618 2.98277 3.05585 3.07617 3.10075 3.26583 3.44514 3.59847 3.71597 3.91513 3.95708 4.15516 4.28826 4.37020 4.59511 4.68262 4.78920 4.98071 5.02519 5.14684 5.23001 5.24730 5.34341 5.51027 5.59072 5.64914 5.76857 5.89162 6.04689 6.14595 6.16151 6.40710 6.69295 6.71135 6.87458 7.03597 7.17074 7.26272 7.60168 7.70282 7.79489 7.82674 8.02803 8.21441 8.28202 8.58427 8.69209 8.89739 8.96485 10.26272 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.029450 B = 0.002336 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.545261 B =11981.046381 C =12598.708058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.461 4.461 8 H 0.075 0.925 9 C 0.100 3.900 10 C -0.206 4.206 11 C -0.085 4.085 12 C 0.001 3.999 13 N -0.650 5.650 14 C 0.504 3.496 15 O -0.526 6.526 16 C -0.107 4.107 17 H 0.099 0.901 18 C -0.099 4.099 19 C -0.074 4.074 20 C 0.181 3.819 21 N -0.522 5.522 22 C 0.287 3.713 23 N -0.523 5.523 24 C 0.151 3.849 25 C -0.175 4.175 26 C -0.065 4.065 27 C -0.120 4.120 28 C -0.142 4.142 29 H 0.278 0.722 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.395 0.605 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.195 0.805 38 H 0.170 0.830 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.588 -16.295 1.118 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.226 4.226 11 C -0.105 4.105 12 C -0.091 4.091 13 N -0.292 5.292 14 C 0.290 3.710 15 O -0.403 6.403 16 C -0.128 4.128 17 H 0.117 0.883 18 C -0.138 4.138 19 C -0.111 4.111 20 C 0.037 3.963 21 N -0.236 5.236 22 C -0.001 4.001 23 N -0.237 5.237 24 C -0.016 4.016 25 C -0.179 4.179 26 C -0.104 4.104 27 C -0.140 4.140 28 C -0.162 4.162 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.228 0.772 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.211 0.789 38 H 0.187 0.813 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.868 -16.671 2.018 18.990 hybrid contribution 0.312 1.313 -0.534 1.451 sum -8.556 -15.358 1.484 17.644 Atomic orbital electron populations 1.69744 1.07283 1.28840 1.38025 1.25879 0.94953 1.01173 0.92540 0.86247 0.79806 0.80096 0.79789 1.19046 1.20429 1.19082 1.19471 0.94720 0.90232 1.44738 0.90637 1.17724 0.92292 0.92003 0.88217 1.20816 1.01254 0.95008 1.05554 1.20390 0.92773 0.97836 0.99478 1.17262 0.94271 0.85864 1.11672 1.43023 1.48701 1.21329 1.16176 1.20331 0.83363 0.85019 0.82286 1.90698 1.39037 1.70497 1.40035 1.21347 0.94541 0.96364 1.00580 0.88290 1.21425 1.02466 0.94140 0.95729 1.20496 0.88456 0.98832 1.03333 1.21414 0.96529 0.88206 0.90109 1.68404 1.05638 1.28090 1.21480 1.24894 0.89568 0.95567 0.90103 1.68422 1.39502 1.02180 1.13570 1.23324 0.89496 0.95574 0.93208 1.21142 0.96987 0.98397 1.01414 1.20319 0.91889 0.94918 1.03232 1.20308 0.98340 0.93176 1.02220 1.21193 0.97308 0.95586 1.02098 0.91071 0.88607 0.87494 0.77182 0.89142 0.90599 0.88720 0.88959 0.78882 0.81323 0.89364 0.89045 0.89115 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.81 10.60 55.55 0.59 -20.22 16 2 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 3 Si 0.92 18.79 29.56 -169.99 -5.03 13.76 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 7 C -0.46 -12.12 9.02 -37.85 -0.34 -12.46 16 8 H 0.08 1.90 7.85 -52.48 -0.41 1.49 16 9 C 0.10 2.64 5.55 -106.80 -0.59 2.04 16 10 C -0.21 -5.12 9.74 -39.26 -0.38 -5.50 16 11 C -0.08 -1.96 8.61 -39.79 -0.34 -2.31 16 12 C 0.00 0.03 6.31 -83.57 -0.53 -0.50 16 13 N -0.65 -10.28 5.19 -9.74 -0.05 -10.33 16 14 C 0.50 7.74 6.97 -10.99 -0.08 7.66 16 15 O -0.53 -10.38 13.26 5.56 0.07 -10.31 16 16 C -0.11 -1.10 2.55 -91.70 -0.23 -1.34 16 17 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 18 C -0.10 -1.00 4.71 -26.67 -0.13 -1.13 16 19 C -0.07 -0.63 5.95 -28.11 -0.17 -0.80 16 20 C 0.18 1.83 6.62 -82.43 -0.55 1.28 16 21 N -0.52 -5.57 10.32 -11.00 -0.11 -5.69 16 22 C 0.29 2.75 12.29 -92.29 -1.13 1.62 16 23 N -0.52 -5.40 10.44 -14.54 -0.15 -5.55 16 24 C 0.15 1.38 10.94 -17.11 -0.19 1.19 16 25 C -0.18 -1.64 5.73 -104.68 -0.60 -2.24 16 26 C -0.07 -0.58 4.90 -28.15 -0.14 -0.72 16 27 C -0.12 -2.62 9.90 -39.79 -0.39 -3.02 16 28 C -0.14 -3.55 8.62 -39.26 -0.34 -3.89 16 29 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 30 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 31 H 0.11 2.43 6.22 -52.48 -0.33 2.10 16 32 H 0.39 4.74 8.58 -40.82 -0.35 4.39 16 33 H 0.09 0.97 7.80 -51.93 -0.41 0.57 16 34 H 0.08 0.85 8.10 -51.92 -0.42 0.43 16 35 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.19 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.09 0.63 7.94 -51.93 -0.41 0.21 16 40 H 0.09 0.91 8.11 -51.93 -0.42 0.49 16 41 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.13 3.41 6.13 -52.49 -0.32 3.09 16 LS Contribution 350.18 15.07 5.28 5.28 Total: -1.00 -31.28 350.18 -10.78 -42.06 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.16 Total: 9.46 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -6.22 Total: -18.46 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.27 Total: -41.79 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.28 -10.78 -42.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592578572.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.703 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds