Wall clock time and date at job start Tue Mar 31 2020 14:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86799 * 120.00091 * 2 1 4 4 H 1.48503 * 109.46795 * 240.00154 * 3 2 1 5 5 H 1.48500 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46927 * 120.00085 * 3 2 1 7 7 C 1.38892 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00186 * 201.37605 * 7 2 1 9 9 N 1.37142 * 119.99808 * 21.37346 * 7 2 1 10 10 C 1.34769 * 120.00245 * 4.78599 * 9 7 2 11 11 O 1.21284 * 120.00004 * 38.74507 * 10 9 7 12 12 C 1.50707 * 119.99972 * 218.74261 * 10 9 7 13 13 H 1.08999 * 109.63103 * 353.46744 * 12 10 9 14 14 C 1.53310 * 109.63300 * 233.06372 * 12 10 9 15 15 C 1.52810 * 108.50936 * 170.30680 * 14 12 10 16 16 C 1.50440 * 110.44992 * 51.04390 * 15 14 12 17 17 N 1.32895 * 118.53345 * 162.52222 * 16 15 14 18 18 C 1.31605 * 121.06301 * 179.71995 * 17 16 15 19 19 N 1.31810 * 121.66812 * 359.90762 * 18 17 16 20 20 C 1.32192 * 120.64799 * 0.10877 * 19 18 17 21 21 C 1.37776 * 122.57981 * 342.30349 * 16 15 14 22 22 C 1.50339 * 122.80034 * 0.57918 * 21 16 15 23 23 C 1.39791 * 119.99686 * 184.78755 * 9 7 2 24 24 C 1.38961 * 120.08056 * 58.23393 * 23 9 7 25 25 C 1.38083 * 119.92522 * 179.74682 * 24 23 9 26 26 C 1.38308 * 120.07192 * 0.55031 * 25 24 23 27 27 C 1.38304 * 120.16290 * 359.69967 * 26 25 24 28 28 C 1.38090 * 120.07277 * 0.02569 * 27 26 25 29 29 H 0.97000 * 120.00017 * 4.80590 * 1 2 3 30 30 H 1.08996 * 109.63375 * 50.59434 * 14 12 10 31 31 H 1.09008 * 109.63035 * 290.00909 * 14 12 10 32 32 H 1.08994 * 109.30970 * 290.74124 * 15 14 12 33 33 H 1.09008 * 109.14570 * 171.23887 * 15 14 12 34 34 H 1.08002 * 119.16280 * 179.90007 * 18 17 16 35 35 H 1.07994 * 120.36840 * 180.02562 * 20 19 18 36 36 H 1.08996 * 109.30821 * 222.18247 * 22 21 16 37 37 H 1.09008 * 109.14143 * 102.67984 * 22 21 16 38 38 H 1.08008 * 120.03751 * 359.97438 * 24 23 9 39 39 H 1.07993 * 119.96167 * 180.29270 * 25 24 23 40 40 H 1.08011 * 119.91907 * 179.72566 * 26 25 24 41 41 H 1.08001 * 119.96686 * 180.02562 * 27 26 25 42 42 H 1.07999 * 120.03403 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0086 -1.2028 -0.0005 8 1 3.0329 -1.2352 0.3404 9 7 1.3936 -2.3495 -0.4339 10 6 0.1495 -2.2935 -0.9492 11 8 -0.1700 -1.3664 -1.6629 12 6 -0.8445 -3.3828 -0.6385 13 1 -0.3512 -4.1817 -0.0850 14 6 -1.4218 -3.9410 -1.9444 15 6 -2.2340 -5.1940 -1.6192 16 6 -3.2160 -4.9119 -0.5150 17 7 -4.2311 -5.7512 -0.3385 18 6 -5.1161 -5.5554 0.6156 19 7 -5.0345 -4.5257 1.4345 20 6 -4.0520 -3.6490 1.3188 21 6 -3.1004 -3.8223 0.3202 22 6 -1.9925 -2.8138 0.1946 23 6 2.0571 -3.5764 -0.3411 24 6 2.4961 -4.0392 0.8934 25 6 3.1465 -5.2540 0.9821 26 6 3.3714 -6.0045 -0.1576 27 6 2.9405 -5.5447 -1.3887 28 6 2.2844 -4.3334 -1.4840 29 1 -0.4850 0.8371 -0.0704 30 1 -0.6092 -4.1975 -2.6240 31 1 -2.0685 -3.1954 -2.4072 32 1 -1.5586 -5.9901 -1.3063 33 1 -2.7754 -5.5104 -2.5109 34 1 -5.9299 -6.2561 0.7305 35 1 -3.9892 -2.8072 1.9924 36 1 -1.6244 -2.5572 1.1880 37 1 -2.3789 -1.9167 -0.2893 38 1 2.3254 -3.4511 1.7831 39 1 3.4837 -5.6164 1.9419 40 1 3.8843 -6.9524 -0.0860 41 1 3.1174 -6.1336 -2.2766 42 1 1.9478 -3.9751 -2.4456 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592587661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:08 Heat of formation + Delta-G solvation = 62.921734 kcal Electronic energy + Delta-G solvation = -27526.695607 eV Core-core repulsion = 23858.505424 eV Total energy + Delta-G solvation = -3668.190183 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.15509 -39.56764 -37.88074 -36.26322 -34.18237 -33.78017 -32.13500 -31.11306 -30.38373 -29.85915 -28.64979 -25.60273 -24.60617 -23.76711 -22.73510 -22.21416 -21.75391 -20.45299 -18.88643 -17.53166 -17.37313 -16.77137 -16.53903 -15.64037 -15.09712 -14.78283 -14.48109 -14.27456 -14.17167 -13.87226 -13.72382 -13.55469 -13.32288 -13.01569 -12.89705 -12.71367 -12.41755 -12.07330 -11.85918 -11.64344 -11.36287 -11.05604 -10.95203 -10.81164 -10.65040 -10.59318 -10.51761 -10.37939 -10.21709 -10.11193 -9.55430 -9.04429 -8.94047 -8.45054 -8.37670 -8.30841 -7.07860 -6.19248 -3.83788 1.08998 1.17531 1.87315 1.91072 3.25277 3.31766 3.34704 3.87777 3.98692 4.14398 4.17113 4.30873 4.36246 4.61330 4.75680 4.96614 5.10273 5.18016 5.24184 5.32841 5.39040 5.47205 5.53436 5.61319 5.67154 5.76306 5.83341 5.95796 5.97677 6.02687 6.10624 6.14490 6.29266 6.39314 6.49982 6.52734 6.57410 6.66694 6.77790 6.91528 7.00061 7.13063 7.18742 7.35413 7.51532 7.96819 8.20617 8.81946 9.08684 9.50889 10.01557 10.76876 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.005408 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.103685 B = 5176.644778 C = 6882.488859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.027 3.973 3 Si 0.915 3.085 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.317 4.317 8 H 0.091 0.909 9 N -0.446 5.446 10 C 0.490 3.510 11 O -0.479 6.479 12 C -0.092 4.092 13 H 0.073 0.927 14 C -0.103 4.103 15 C -0.069 4.069 16 C 0.176 3.824 17 N -0.524 5.524 18 C 0.275 3.725 19 N -0.526 5.526 20 C 0.145 3.855 21 C -0.162 4.162 22 C -0.049 4.049 23 C 0.181 3.819 24 C -0.140 4.140 25 C -0.108 4.108 26 C -0.160 4.160 27 C -0.104 4.104 28 C -0.151 4.151 29 H 0.267 0.733 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.191 0.809 35 H 0.168 0.832 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 -10.603 0.544 10.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.181 4.181 3 Si 0.742 3.258 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.442 4.442 8 H 0.109 0.891 9 N -0.162 5.162 10 C 0.279 3.721 11 O -0.349 6.349 12 C -0.115 4.115 13 H 0.091 0.909 14 C -0.142 4.142 15 C -0.107 4.107 16 C 0.032 3.968 17 N -0.238 5.238 18 C -0.013 4.013 19 N -0.239 5.239 20 C -0.022 4.022 21 C -0.166 4.166 22 C -0.087 4.087 23 C 0.085 3.915 24 C -0.161 4.161 25 C -0.126 4.126 26 C -0.179 4.179 27 C -0.123 4.123 28 C -0.172 4.172 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.207 0.793 35 H 0.185 0.815 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.132 0.868 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.487 -10.539 0.290 11.105 hybrid contribution 1.069 1.403 0.152 1.770 sum -2.419 -9.136 0.442 9.461 Atomic orbital electron populations 1.70096 1.06074 1.27995 1.40576 1.24795 0.95104 0.98924 0.99294 0.86176 0.79197 0.81973 0.78415 1.20406 1.21155 1.20440 1.19290 0.97145 0.84760 1.42985 0.89077 1.41115 1.14270 1.03353 1.57455 1.18965 0.82074 0.86750 0.84357 1.90447 1.78683 1.34335 1.31483 1.21182 0.95940 0.97934 0.96427 0.90877 1.21521 0.99401 0.95962 0.97310 1.20439 0.95451 0.99396 0.95410 1.21365 0.92232 0.89003 0.94160 1.68340 1.03894 1.30257 1.21315 1.24746 0.96128 0.93518 0.86951 1.68362 1.23745 1.04432 1.27385 1.23298 0.88162 0.96267 0.94497 1.21490 0.99674 0.98357 0.97047 1.20119 0.91020 0.95764 1.01795 1.17937 0.94588 0.86632 0.92331 1.21361 1.01346 0.95942 0.97413 1.20932 0.98921 0.94790 0.97991 1.20890 1.03730 1.00281 0.92974 1.20854 0.98445 0.95712 0.97256 1.21213 1.02004 0.96355 0.97591 0.92255 0.90803 0.90756 0.89307 0.89408 0.79281 0.81510 0.89723 0.88494 0.85918 0.86862 0.87088 0.86768 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.64 9.67 55.49 0.54 -21.10 16 2 C 0.03 0.70 4.77 -17.49 -0.08 0.62 16 3 Si 0.92 20.78 29.61 -169.99 -5.03 15.75 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.32 -8.14 9.37 -14.93 -0.14 -8.28 16 8 H 0.09 2.28 7.92 -52.48 -0.42 1.87 16 9 N -0.45 -10.50 2.73 -58.97 -0.16 -10.66 16 10 C 0.49 11.38 4.32 -10.99 -0.05 11.33 16 11 O -0.48 -12.86 13.88 5.55 0.08 -12.79 16 12 C -0.09 -1.72 2.34 -91.69 -0.21 -1.94 16 13 H 0.07 1.35 7.01 -51.93 -0.36 0.99 16 14 C -0.10 -1.66 5.08 -26.67 -0.14 -1.79 16 15 C -0.07 -0.96 5.95 -28.11 -0.17 -1.13 16 16 C 0.18 2.72 6.62 -82.43 -0.55 2.17 16 17 N -0.52 -7.87 10.32 -11.00 -0.11 -7.98 16 18 C 0.27 3.76 12.29 -92.30 -1.13 2.63 16 19 N -0.53 -7.74 10.44 -14.54 -0.15 -7.90 16 20 C 0.14 2.13 10.94 -17.11 -0.19 1.94 16 21 C -0.16 -2.56 5.73 -104.68 -0.60 -3.16 16 22 C -0.05 -0.87 5.02 -28.14 -0.14 -1.01 16 23 C 0.18 3.62 4.13 -83.69 -0.35 3.28 16 24 C -0.14 -2.53 9.62 -39.37 -0.38 -2.91 16 25 C -0.11 -1.61 10.04 -39.61 -0.40 -2.01 16 26 C -0.16 -2.23 10.04 -39.53 -0.40 -2.63 16 27 C -0.10 -1.53 10.04 -39.61 -0.40 -1.92 16 28 C -0.15 -2.66 9.61 -39.37 -0.38 -3.04 16 29 H 0.27 7.01 8.32 -40.82 -0.34 6.67 16 30 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 31 H 0.07 1.27 8.10 -51.92 -0.42 0.85 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.19 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.10 1.92 8.01 -51.92 -0.42 1.51 16 38 H 0.12 2.27 8.06 -52.48 -0.42 1.84 16 39 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.11 1.25 8.06 -52.48 -0.42 0.83 16 41 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 352.20 15.07 5.31 5.31 Total: -1.00 -29.94 352.20 -10.63 -40.57 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -5.40 Total: 6.65 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -5.69 Total: -7.85 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.11 Total: -47.64 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.94 -10.63 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592587661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.491 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds