Wall clock time and date at job start Tue Mar 31 2020 14:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86794 * 120.00088 * 2 1 4 4 H 1.48506 * 109.47036 * 269.99524 * 3 2 1 5 5 H 1.48500 * 109.47269 * 29.99515 * 3 2 1 6 6 H 1.48497 * 109.47420 * 150.00088 * 3 2 1 7 7 C 1.38896 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99547 * 168.14973 * 7 2 1 9 9 N 1.37134 * 120.00122 * 348.14494 * 7 2 1 10 10 C 1.34779 * 120.00159 * 289.26093 * 9 7 2 11 11 O 1.21274 * 120.00205 * 1.64156 * 10 9 7 12 12 C 1.50704 * 119.99905 * 181.64474 * 10 9 7 13 13 H 1.09001 * 109.79831 * 342.73507 * 12 10 9 14 14 C 1.53314 * 109.63389 * 103.24043 * 12 10 9 15 15 C 1.52810 * 108.50799 * 189.49202 * 14 12 10 16 16 C 1.50438 * 110.44844 * 308.95358 * 15 14 12 17 17 N 1.32894 * 118.53030 * 197.48286 * 16 15 14 18 18 C 1.31606 * 121.05837 * 180.28203 * 17 16 15 19 19 N 1.31815 * 121.67525 * 0.09110 * 18 17 16 20 20 C 1.32184 * 120.63913 * 359.89437 * 19 18 17 21 21 C 1.37768 * 122.58359 * 17.70574 * 16 15 14 22 22 C 1.50348 * 122.80160 * 359.40702 * 21 16 15 23 23 C 1.39788 * 119.99985 * 109.26364 * 9 7 2 24 24 C 1.38959 * 120.07789 * 242.33690 * 23 9 7 25 25 C 1.38087 * 119.92338 * 179.78817 * 24 23 9 26 26 C 1.38310 * 120.07586 * 0.46180 * 25 24 23 27 27 C 1.38310 * 120.15716 * 359.79261 * 26 25 24 28 28 C 1.38082 * 120.07427 * 359.97281 * 27 26 25 29 29 H 0.96997 * 120.00143 * 4.92518 * 1 2 3 30 30 H 1.08993 * 109.63102 * 69.78593 * 14 12 10 31 31 H 1.09001 * 109.63066 * 309.19809 * 14 12 10 32 32 H 1.09003 * 109.30351 * 188.65744 * 15 14 12 33 33 H 1.08996 * 109.14898 * 69.15445 * 15 14 12 34 34 H 1.08007 * 119.16210 * 180.02562 * 18 17 16 35 35 H 1.07999 * 120.36441 * 179.97438 * 20 19 18 36 36 H 1.09004 * 109.30865 * 257.22800 * 22 21 16 37 37 H 1.08997 * 109.30910 * 137.81987 * 22 21 16 38 38 H 1.07998 * 120.04070 * 359.97438 * 24 23 9 39 39 H 1.07997 * 119.96145 * 180.20365 * 25 24 23 40 40 H 1.07998 * 119.92357 * 179.76545 * 26 25 24 41 41 H 1.08000 * 119.96245 * 179.97438 * 27 26 25 42 42 H 1.08004 * 120.03947 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4402 0.7000 7 6 2.0086 -1.2029 0.0005 8 1 3.0714 -1.2129 -0.1915 9 7 1.3448 -2.3777 0.2450 10 6 0.8848 -2.6468 1.4830 11 8 1.0316 -1.8371 2.3738 12 6 0.1880 -3.9540 1.7602 13 1 -0.1252 -4.4118 0.8219 14 6 1.1413 -4.8988 2.5014 15 6 0.5019 -6.2855 2.5595 16 6 -0.9032 -6.1947 3.0892 17 7 -1.4850 -7.3018 3.5384 18 6 -2.7144 -7.2804 4.0076 19 7 -3.4194 -6.1674 4.0508 20 6 -2.9060 -5.0276 3.6215 21 6 -1.6087 -5.0118 3.1219 22 6 -1.0340 -3.7072 2.6443 23 6 1.1454 -3.2962 -0.7897 24 6 -0.1439 -3.6224 -1.1925 25 6 -0.3372 -4.5269 -2.2179 26 6 0.7505 -5.1151 -2.8374 27 6 2.0351 -4.7968 -2.4356 28 6 2.2358 -3.8896 -1.4142 29 1 -0.4850 0.8369 -0.0721 30 1 1.3088 -4.5302 3.5133 31 1 2.0898 -4.9550 1.9673 32 1 1.0926 -6.9276 3.2129 33 1 0.4821 -6.7124 1.5568 34 1 -3.1573 -8.1982 4.3653 35 1 -3.4877 -4.1184 3.6587 36 1 -0.7406 -3.1060 3.5049 37 1 -1.7895 -3.1683 2.0726 38 1 -0.9938 -3.1669 -0.7061 39 1 -1.3389 -4.7783 -2.5336 40 1 0.5964 -5.8250 -3.6366 41 1 2.8822 -5.2583 -2.9213 42 1 3.2391 -3.6417 -1.1005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592587662.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:11 Heat of formation + Delta-G solvation = 22.642751 kcal Electronic energy + Delta-G solvation = -27454.357408 eV Core-core repulsion = 23784.420598 eV Total energy + Delta-G solvation = -3669.936811 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.40992 -41.21580 -39.32710 -37.70017 -36.16083 -35.03330 -33.98995 -32.48249 -31.78946 -31.16141 -30.18353 -27.44334 -25.97406 -25.18409 -24.03039 -23.51764 -23.18196 -21.88673 -20.42600 -19.20934 -18.76225 -18.11813 -17.87191 -17.24094 -16.96678 -16.26804 -16.05110 -15.88936 -15.61050 -15.24163 -15.14265 -14.87846 -14.69063 -14.44705 -14.29982 -14.16588 -14.01096 -13.60694 -13.35105 -13.18121 -13.06752 -12.91810 -12.83228 -12.34449 -12.19101 -11.99485 -11.93554 -11.88692 -11.79232 -11.37083 -10.85479 -10.51273 -10.21719 -10.19372 -9.75155 -9.66017 -8.86300 -8.25852 -6.39316 -0.09398 -0.00215 0.58318 0.62164 1.33395 1.39889 1.48413 2.05983 2.31702 2.73076 2.88905 3.00316 3.02475 3.07604 3.26747 3.43758 3.61355 3.69138 3.82887 3.98552 4.20477 4.24662 4.25857 4.27843 4.40324 4.43915 4.47061 4.55134 4.64821 4.73118 4.81348 4.84538 4.86054 5.02438 5.06987 5.10981 5.19988 5.27090 5.42809 5.44094 5.65329 5.73483 5.83740 5.95381 6.15722 6.33422 6.93071 7.04601 7.06383 7.45553 8.10446 8.74268 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.004833 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.607051 B = 5791.893352 C = 7025.030341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.029 3.971 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.362 4.362 8 H 0.070 0.930 9 N -0.427 5.427 10 C 0.503 3.497 11 O -0.589 6.589 12 C -0.104 4.104 13 H 0.099 0.901 14 C -0.096 4.096 15 C -0.059 4.059 16 C 0.175 3.825 17 N -0.530 5.530 18 C 0.281 3.719 19 N -0.535 5.535 20 C 0.149 3.851 21 C -0.177 4.177 22 C -0.048 4.048 23 C 0.146 3.854 24 C -0.148 4.148 25 C -0.109 4.109 26 C -0.135 4.135 27 C -0.101 4.101 28 C -0.145 4.145 29 H 0.267 0.733 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.228 0.772 35 H 0.184 0.816 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.141 0.859 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 -14.961 -1.117 15.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.176 4.176 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.489 4.489 8 H 0.088 0.912 9 N -0.144 5.144 10 C 0.293 3.707 11 O -0.470 6.470 12 C -0.126 4.126 13 H 0.117 0.883 14 C -0.135 4.135 15 C -0.097 4.097 16 C 0.031 3.969 17 N -0.244 5.244 18 C -0.006 4.006 19 N -0.248 5.248 20 C -0.018 4.018 21 C -0.181 4.181 22 C -0.087 4.087 23 C 0.054 3.946 24 C -0.168 4.168 25 C -0.127 4.127 26 C -0.153 4.153 27 C -0.119 4.119 28 C -0.165 4.165 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.244 0.756 35 H 0.201 0.799 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.158 0.842 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.598 -15.249 -0.247 15.471 hybrid contribution 0.447 2.451 -0.125 2.494 sum -2.151 -12.798 -0.372 12.983 Atomic orbital electron populations 1.69904 1.07733 1.28370 1.46175 1.26382 0.95884 1.02988 0.92386 0.85261 0.78555 0.77731 0.78731 1.18591 1.21059 1.19142 1.19105 0.92358 0.83431 1.53983 0.91244 1.40985 1.52360 1.16016 1.05080 1.21048 0.79255 0.87855 0.82556 1.90468 1.59531 1.51170 1.45875 1.21388 0.96292 0.93943 1.00956 0.88308 1.21403 0.98060 0.93495 1.00521 1.20388 0.88946 0.97114 1.03207 1.21547 0.96875 0.87761 0.90673 1.68449 1.13191 1.30221 1.12578 1.25563 0.86496 0.97304 0.91246 1.68487 1.38518 0.99943 1.17874 1.23569 0.91721 0.97322 0.89202 1.21106 0.97157 0.96919 1.02935 1.20006 0.96185 0.93191 0.99313 1.18504 0.93619 0.90613 0.91815 1.21280 0.95565 1.00561 0.99430 1.21244 1.00477 0.96071 0.94944 1.21403 0.91784 1.01156 1.00949 1.21290 0.98478 0.96560 0.95573 1.21300 0.97835 0.98274 0.99107 0.92408 0.91676 0.90160 0.87043 0.87762 0.75627 0.79914 0.90600 0.90850 0.88594 0.84167 0.82806 0.83082 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.59 13.48 21.65 0.29 -51.30 16 2 C 0.03 1.63 5.06 84.91 0.43 2.06 16 3 Si 0.97 44.47 29.57 68.60 2.03 46.50 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.36 -20.07 8.38 84.02 0.70 -19.37 16 8 H 0.07 3.79 7.86 -2.91 -0.02 3.77 16 9 N -0.43 -21.39 2.33 -458.89 -1.07 -22.46 16 10 C 0.50 24.63 6.17 87.66 0.54 25.18 16 11 O -0.59 -33.83 15.95 -3.01 -0.05 -33.88 16 12 C -0.10 -3.84 2.05 -11.49 -0.02 -3.87 16 13 H 0.10 3.53 4.86 -2.39 -0.01 3.52 16 14 C -0.10 -2.93 5.26 30.64 0.16 -2.77 16 15 C -0.06 -1.43 5.95 29.70 0.18 -1.26 16 16 C 0.18 4.78 6.62 42.20 0.28 5.06 16 17 N -0.53 -13.64 10.32 -188.72 -1.95 -15.58 16 18 C 0.28 6.44 12.29 180.93 2.22 8.66 16 19 N -0.53 -13.69 10.44 -199.92 -2.09 -15.77 16 20 C 0.15 3.91 10.94 84.83 0.93 4.83 16 21 C -0.18 -5.12 5.73 -19.90 -0.11 -5.23 16 22 C -0.05 -1.66 4.93 29.68 0.15 -1.51 16 23 C 0.15 6.11 4.55 38.22 0.17 6.29 16 24 C -0.15 -5.65 7.52 22.41 0.17 -5.49 16 25 C -0.11 -3.15 10.04 22.25 0.22 -2.93 16 26 C -0.13 -3.29 10.04 22.30 0.22 -3.07 16 27 C -0.10 -2.67 10.04 22.25 0.22 -2.45 16 28 C -0.15 -5.13 9.71 22.41 0.22 -4.92 16 29 H 0.27 14.74 8.32 -92.71 -0.77 13.97 16 30 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 31 H 0.08 2.40 8.12 -2.39 -0.02 2.38 16 32 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.23 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.18 4.03 8.06 -2.91 -0.02 4.01 16 36 H 0.08 2.89 7.56 -2.39 -0.02 2.87 16 37 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.10 4.05 7.98 -2.91 -0.02 4.03 16 39 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 40 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 41 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 42 H 0.11 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -72.48 354.27 4.89 -67.59 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 1.04 Total: 25.67 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 6.68 Total: -0.77 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -4.81 Total: -105.12 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.05 Total: -33.88 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -72.48 4.89 -67.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592587662.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.234 kcal (2) G-P(sol) polarization free energy of solvation -72.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds