Wall clock time and date at job start Tue Mar 31 2020 13:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00304 * 2 1 4 4 H 1.48507 * 109.47013 * 270.00401 * 3 2 1 5 5 H 1.48497 * 109.46947 * 30.00405 * 3 2 1 6 6 H 1.48491 * 109.47234 * 150.00589 * 3 2 1 7 7 C 1.37877 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99811 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00560 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47676 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47630 * 180.02562 * 10 9 7 12 12 C 1.50691 * 109.47367 * 180.02562 * 11 10 9 13 13 N 1.31138 * 126.55417 * 90.00159 * 12 11 10 14 14 C 1.34495 * 105.61509 * 179.97438 * 13 12 11 15 15 C 1.50700 * 126.28274 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46967 * 90.00388 * 15 14 13 17 17 N 1.31261 * 120.05698 * 269.72171 * 16 15 14 18 18 C 1.32580 * 122.78213 * 179.75114 * 17 16 15 19 19 C 1.36210 * 121.86967 * 0.52818 * 18 17 16 20 20 C 1.40654 * 118.66617 * 359.75348 * 19 18 17 21 21 C 1.40229 * 122.22233 * 179.97438 * 20 19 18 22 22 C 1.36208 * 119.48098 * 180.02562 * 21 20 19 23 23 C 1.39383 * 121.02093 * 0.02562 * 22 21 20 24 24 C 1.36163 * 121.09432 * 359.92578 * 23 22 21 25 25 C 1.40384 * 119.51455 * 0.10256 * 24 23 22 26 26 N 1.29942 * 107.42747 * 359.97438 * 14 13 12 27 27 O 1.21306 * 110.25137 * 0.02562 * 26 14 13 28 28 H 0.97002 * 119.99644 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47016 * 59.99768 * 9 7 2 30 30 H 1.09000 * 109.47434 * 300.00438 * 9 7 2 31 31 H 1.09001 * 109.46920 * 59.99914 * 10 9 7 32 32 H 1.09000 * 109.47215 * 300.00778 * 10 9 7 33 33 H 1.09001 * 109.47188 * 59.99896 * 11 10 9 34 34 H 1.09000 * 109.47308 * 300.00539 * 11 10 9 35 35 H 1.08999 * 109.46936 * 209.99626 * 15 14 13 36 36 H 1.09000 * 109.47331 * 330.00375 * 15 14 13 37 37 H 1.08000 * 119.07067 * 180.30502 * 18 17 16 38 38 H 1.07998 * 120.66474 * 179.76571 * 19 18 17 39 39 H 1.08000 * 120.25976 * 0.02701 * 21 20 19 40 40 H 1.08007 * 119.49149 * 179.97438 * 22 21 20 41 41 H 1.07999 * 119.45284 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.24857 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6367 -0.0009 12 6 6.0538 -4.0574 -0.0015 13 7 6.3142 -4.7934 -1.0551 14 6 6.7334 -5.9777 -0.5749 15 6 7.1555 -7.1721 -1.3912 16 6 8.6357 -7.0964 -1.6639 17 7 9.0755 -6.4880 -2.7407 18 6 10.3651 -6.3854 -3.0310 19 6 11.3276 -6.9189 -2.2284 20 6 10.9335 -7.5916 -1.0578 21 6 11.8611 -8.1690 -0.1788 22 6 11.4173 -8.8081 0.9392 23 6 10.0556 -8.8974 1.2227 24 6 9.1269 -8.3478 0.3924 25 6 9.5463 -7.6816 -0.7699 26 7 6.7076 -5.9029 0.7221 27 8 6.3199 -4.8079 1.0719 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6805 0.8888 30 1 3.8746 -0.6801 -0.8911 31 1 3.6578 -3.1506 -0.8907 32 1 3.6585 -3.1503 0.8892 33 1 5.9148 -2.1228 0.8890 34 1 5.9149 -2.1229 -0.8909 35 1 6.9340 -8.0857 -0.8396 36 1 6.6118 -7.1770 -2.3359 37 1 10.6607 -5.8672 -3.9313 38 1 12.3725 -6.8270 -2.4857 39 1 12.9191 -8.1075 -0.3867 40 1 12.1316 -9.2532 1.6160 41 1 9.7317 -9.4104 2.1162 42 1 8.0751 -8.4247 0.6256 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594537855.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:07 Heat of formation + Delta-G solvation = 86.501462 kcal Electronic energy + Delta-G solvation = -25245.055584 eV Core-core repulsion = 21577.887895 eV Total energy + Delta-G solvation = -3667.167689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.64356 -41.95906 -38.43267 -37.39535 -36.89701 -35.23333 -34.44085 -33.08459 -32.26610 -31.24635 -29.93565 -29.25225 -25.92832 -25.15689 -24.57958 -24.38123 -23.07452 -22.09469 -21.66410 -19.21150 -19.00211 -18.71597 -18.67297 -18.24893 -17.30509 -16.54069 -16.21153 -16.01304 -15.81339 -15.71406 -15.39848 -14.89439 -14.78850 -14.68841 -14.61287 -14.07394 -13.84843 -13.73729 -13.43760 -13.11927 -13.07714 -12.98794 -12.76011 -12.59630 -12.50522 -12.11987 -12.03064 -11.77381 -11.76001 -11.49020 -11.33554 -11.17143 -10.88869 -10.71979 -10.50372 -10.11475 -9.07680 -8.24927 -6.29856 -0.73153 -0.12759 0.06511 0.83252 1.14630 1.42828 1.44590 1.56369 1.78501 2.02190 2.41538 2.56639 2.90468 3.09319 3.11184 3.12614 3.47944 3.61926 3.79160 3.87914 3.93501 4.14662 4.15248 4.16347 4.25400 4.26967 4.40040 4.41021 4.43118 4.64494 4.74698 4.77024 4.81172 4.86874 4.91158 4.97382 5.02386 5.06768 5.09255 5.41014 5.44099 5.49775 5.59828 5.60065 5.69763 5.86678 6.31583 6.78803 6.92424 7.07736 7.34576 8.92120 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024718 B = 0.002220 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.489330 B =12608.675027 C =12984.545157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.002 4.002 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.233 1.233 7 C -0.535 4.535 8 H 0.026 0.974 9 C -0.010 4.010 10 C -0.089 4.089 11 C -0.024 4.024 12 C 0.202 3.798 13 N -0.499 5.499 14 C 0.175 3.825 15 C 0.020 3.980 16 C 0.154 3.846 17 N -0.500 5.500 18 C 0.056 3.944 19 C -0.144 4.144 20 C -0.048 4.048 21 C -0.115 4.115 22 C -0.098 4.098 23 C -0.115 4.115 24 C -0.104 4.104 25 C -0.116 4.116 26 N -0.392 5.392 27 O 0.069 5.931 28 H 0.265 0.735 29 H 0.037 0.963 30 H 0.029 0.971 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.175 0.825 38 H 0.172 0.828 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.867 -18.113 0.257 34.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.198 4.198 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.156 1.156 7 C -0.573 4.573 8 H 0.044 0.956 9 C -0.048 4.048 10 C -0.128 4.128 11 C -0.062 4.062 12 C -0.018 4.018 13 N -0.233 5.233 14 C -0.099 4.099 15 C -0.019 4.019 16 C 0.001 3.999 17 N -0.208 5.208 18 C -0.087 4.087 19 C -0.163 4.163 20 C -0.053 4.053 21 C -0.133 4.133 22 C -0.116 4.116 23 C -0.133 4.133 24 C -0.124 4.124 25 C -0.119 4.119 26 N -0.102 5.102 27 O 0.012 5.988 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.137 0.863 37 H 0.192 0.808 38 H 0.190 0.810 39 H 0.178 0.822 40 H 0.177 0.823 41 H 0.167 0.833 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 29.515 -18.355 -0.329 34.758 hybrid contribution -0.228 0.489 0.354 0.645 sum 29.287 -17.865 0.025 34.306 Atomic orbital electron populations 1.70093 1.08598 1.28162 1.52824 1.26117 0.95660 1.03923 0.94092 0.85592 0.79882 0.77567 0.79208 1.19337 1.21524 1.15602 1.21508 0.92463 0.92922 1.50375 0.95559 1.19528 0.93568 0.93860 0.97813 1.21298 0.91462 0.98664 1.01349 1.20546 0.96042 0.81937 1.07689 1.29351 0.93669 0.98860 0.79918 1.71975 1.18943 1.02938 1.29463 1.25705 0.99772 0.96107 0.88318 1.18882 0.90704 0.91994 1.00299 1.21139 0.94739 0.93660 0.90331 1.67178 1.19494 1.15111 1.19026 1.22616 0.87044 0.98323 1.00705 1.22310 1.02610 0.97576 0.93776 1.18565 0.92641 0.97867 0.96248 1.21329 1.00169 0.97647 0.94134 1.21431 0.96121 0.97046 0.97046 1.21331 0.93350 0.98678 0.99940 1.21204 1.01060 0.96922 0.93201 1.18981 0.94065 1.01446 0.97378 1.74553 1.19327 1.00778 1.15564 1.85264 1.59879 1.17515 1.36106 0.92613 0.94497 0.95250 0.93445 0.92587 0.85405 0.86106 0.85162 0.86290 0.80810 0.81011 0.82222 0.82338 0.83252 0.84927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.30 13.96 21.45 0.30 -60.00 16 2 C 0.00 -0.10 5.47 84.65 0.46 0.36 16 3 Si 0.95 42.95 27.47 68.60 1.88 44.83 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.23 -9.26 6.54 99.48 0.65 -8.61 16 7 C -0.53 -30.44 9.66 25.60 0.25 -30.19 16 8 H 0.03 1.67 7.99 -2.91 -0.02 1.65 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.32 16 10 C -0.09 -3.24 5.13 30.59 0.16 -3.09 16 11 C -0.02 -0.64 5.84 29.84 0.17 -0.47 16 12 C 0.20 6.13 7.77 88.38 0.69 6.82 16 13 N -0.50 -16.40 11.55 -303.18 -3.50 -19.91 16 14 C 0.17 5.15 7.45 138.46 1.03 6.19 16 15 C 0.02 0.48 5.70 29.10 0.17 0.64 16 16 C 0.15 3.80 6.09 43.17 0.26 4.07 16 17 N -0.50 -13.01 10.22 -183.62 -1.88 -14.89 16 18 C 0.06 1.12 11.07 84.11 0.93 2.05 16 19 C -0.14 -2.28 9.88 22.39 0.22 -2.06 16 20 C -0.05 -0.88 5.75 -21.28 -0.12 -1.00 16 21 C -0.12 -1.44 9.81 22.28 0.22 -1.22 16 22 C -0.10 -1.08 9.95 22.07 0.22 -0.86 16 23 C -0.12 -1.58 9.94 22.06 0.22 -1.36 16 24 C -0.10 -1.93 9.30 22.31 0.21 -1.73 16 25 C -0.12 -2.54 5.74 -21.31 -0.12 -2.67 16 26 N -0.39 -11.77 12.16 -60.30 -0.73 -12.50 16 27 O 0.07 2.09 11.31 74.81 0.85 2.94 16 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.04 1.49 7.20 -2.39 -0.02 1.48 16 30 H 0.03 1.21 7.57 -2.39 -0.02 1.19 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.13 2.36 6.48 -2.39 -0.02 2.35 16 36 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 40 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 41 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.13 2.37 6.46 -2.91 -0.02 2.35 16 Total: -1.00 -76.10 361.04 2.99 -73.12 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.99 Total: 11.25 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 5.08 Total: -24.85 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -5.81 Total: -107.29 kcal Atomic # 8 Polarization: 2.09 SS G_CDS: 0.85 Total: 2.94 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.88 Total: 44.83 kcal Total: -76.10 2.99 -73.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594537855.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.620 kcal (2) G-P(sol) polarization free energy of solvation -76.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds