Wall clock time and date at job start Tue Mar 31 2020 14:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00235 * 2 1 4 4 H 1.48510 * 109.46639 * 270.00368 * 3 2 1 5 5 H 1.48503 * 109.46956 * 29.99768 * 3 2 1 6 6 H 1.48494 * 109.47530 * 150.00081 * 3 2 1 7 7 C 1.37879 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00065 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99951 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47249 * 180.02562 * 9 7 2 11 11 C 1.46955 * 111.00359 * 170.00072 * 10 9 7 12 12 C 1.53044 * 109.36638 * 183.18768 * 11 10 9 13 13 N 1.46962 * 109.36423 * 301.60049 * 12 11 10 14 14 C 1.46903 * 110.99815 * 183.18952 * 13 12 11 15 15 C 1.50698 * 109.46856 * 164.72195 * 14 13 12 16 16 C 1.38271 * 119.97437 * 106.92162 * 15 14 13 17 17 C 1.38167 * 120.02702 * 179.97438 * 16 15 14 18 18 C 1.38478 * 119.97839 * 0.02562 * 17 16 15 19 19 F 1.35094 * 120.03240 * 180.02562 * 18 17 16 20 20 C 1.38442 * 119.94566 * 359.97438 * 18 17 16 21 21 C 1.38216 * 119.97592 * 286.92140 * 15 14 13 22 22 N 1.48005 * 119.98601 * 0.27813 * 21 15 14 23 23 O 1.21807 * 119.99814 * 174.20440 * 22 21 15 24 24 O 1.21792 * 120.00112 * 354.20615 * 22 21 15 25 25 C 1.46952 * 110.88181 * 59.32178 * 13 12 11 26 26 C 1.46962 * 110.99815 * 293.80220 * 10 9 7 27 27 H 0.97002 * 120.00074 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47081 * 60.00280 * 9 7 2 29 29 H 1.08999 * 109.47038 * 299.99958 * 9 7 2 30 30 H 1.09000 * 109.48460 * 63.21974 * 11 10 9 31 31 H 1.08996 * 109.48376 * 303.15948 * 11 10 9 32 32 H 1.09002 * 109.49178 * 181.63040 * 12 11 10 33 33 H 1.09002 * 109.48978 * 61.56678 * 12 11 10 34 34 H 1.09000 * 109.47278 * 44.72309 * 14 13 12 35 35 H 1.08998 * 109.47158 * 284.72143 * 14 13 12 36 36 H 1.08002 * 119.98603 * 359.97438 * 16 15 14 37 37 H 1.08003 * 120.01486 * 180.02562 * 17 16 15 38 38 H 1.07999 * 120.01321 * 180.02562 * 20 18 17 39 39 H 1.08995 * 109.49026 * 60.64288 * 25 13 12 40 40 H 1.08996 * 109.49156 * 180.71151 * 25 13 12 41 41 H 1.09002 * 109.48789 * 296.77794 * 26 10 9 42 42 H 1.08995 * 109.48616 * 56.84482 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5209 -4.8941 0.2377 12 6 2.5564 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2741 -7.1758 -0.9460 15 6 4.7605 -7.4207 -2.3512 16 6 6.0454 -7.0576 -2.7105 17 6 6.4927 -7.2822 -3.9984 18 6 5.6536 -7.8706 -4.9296 19 9 6.0900 -8.0911 -6.1889 20 6 4.3673 -8.2337 -4.5687 21 6 3.9220 -8.0081 -3.2797 22 7 2.5449 -8.3906 -2.8952 23 8 1.7717 -8.8102 -3.7377 24 8 2.1848 -8.2858 -1.7365 25 6 4.0042 -4.7810 -1.1842 26 6 2.9687 -3.6562 -1.2559 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 0.8254 -5.0915 -0.5780 31 1 0.9733 -4.8433 1.1787 32 1 2.0485 -6.9718 0.4571 33 1 3.2355 -5.8353 1.1419 34 1 3.7833 -8.0734 -0.5698 35 1 5.1213 -6.9296 -0.3060 36 1 6.6996 -6.5983 -1.9842 37 1 7.4965 -6.9988 -4.2787 38 1 3.7121 -8.6931 -5.2939 39 1 4.6997 -4.5835 -0.3686 40 1 4.5518 -4.8316 -2.1253 41 1 2.2896 -3.8396 -2.0885 42 1 3.4766 -2.7032 -1.4035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595392343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:33 Heat of formation + Delta-G solvation = 3.533778 kcal Electronic energy + Delta-G solvation = -27751.979607 eV Core-core repulsion = 23650.444944 eV Total energy + Delta-G solvation = -4101.534663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.55008 -42.27208 -39.91105 -38.53310 -36.61391 -35.21853 -32.75169 -32.43998 -31.67290 -30.41813 -28.40725 -26.96717 -25.81765 -24.00346 -23.28532 -23.05044 -21.97512 -21.34046 -19.51936 -19.20152 -18.70625 -17.55736 -17.14204 -16.86387 -16.37624 -16.28390 -16.21811 -15.78943 -14.90937 -14.64465 -14.57705 -14.21587 -14.02569 -13.92384 -13.48671 -13.41839 -12.88482 -12.56259 -12.35312 -12.23490 -11.99749 -11.66122 -11.41922 -11.21346 -11.04187 -10.91978 -10.82206 -10.73161 -10.57011 -10.39785 -10.32056 -10.11350 -9.73722 -9.41065 -9.16365 -8.44383 -8.23384 -7.22534 -6.02343 -4.04047 -0.42369 0.30520 1.12761 1.28786 2.68209 3.30608 3.36982 3.40624 3.44905 3.82551 3.95091 4.06525 4.19788 4.39195 4.41869 4.64993 4.92082 4.95907 5.10439 5.13952 5.28906 5.32714 5.33897 5.40260 5.52449 5.56963 5.77697 5.83563 5.84815 5.87904 6.04243 6.21821 6.38686 6.49517 6.58317 6.63931 7.11377 7.14816 7.35427 7.38236 7.66968 7.79740 8.09738 8.21082 8.55670 9.03293 9.60073 11.08520 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.003203 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.622542 B = 8739.871927 C = 9530.568351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.056 3.944 12 C 0.069 3.931 13 N -0.528 5.528 14 C 0.078 3.922 15 C -0.016 4.016 16 C -0.087 4.087 17 C -0.103 4.103 18 C 0.100 3.900 19 F -0.125 7.125 20 C -0.097 4.097 21 C 0.003 3.997 22 N 0.032 4.968 23 O -0.183 6.183 24 O -0.108 6.108 25 C 0.054 3.946 26 C 0.069 3.931 27 H 0.261 0.739 28 H -0.009 1.009 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.111 0.889 35 H 0.052 0.948 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.042 0.958 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.146 -18.851 -6.412 24.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.073 4.073 12 C -0.058 4.058 13 N -0.253 5.253 14 C -0.050 4.050 15 C -0.018 4.018 16 C -0.106 4.106 17 C -0.121 4.121 18 C 0.080 3.920 19 F -0.103 7.103 20 C -0.117 4.117 21 C -0.080 4.080 22 N 0.554 4.446 23 O -0.391 6.391 24 O -0.335 6.335 25 C -0.074 4.074 26 C -0.060 4.060 27 H 0.071 0.929 28 H 0.009 0.991 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.174 0.826 37 H 0.172 0.828 38 H 0.181 0.819 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.629 -18.559 -6.715 24.567 hybrid contribution 0.108 0.896 -0.382 0.980 sum 14.737 -17.663 -7.097 24.074 Atomic orbital electron populations 1.69959 1.06057 1.26762 1.50915 1.24991 0.94848 0.99274 0.95480 0.86520 0.79799 0.83224 0.77988 1.20788 1.21228 1.19821 1.21145 0.93374 0.90001 1.50130 0.92010 1.19695 0.90042 0.87247 0.96162 1.62306 1.28243 1.02953 1.32820 1.22074 0.94858 0.89685 1.00677 1.22148 0.95720 0.99342 0.88623 1.62082 1.24445 1.02135 1.36612 1.21335 0.95939 0.98057 0.89623 1.19973 0.92539 0.92619 0.96676 1.21068 0.94526 0.98783 0.96220 1.21575 1.00919 0.96821 0.92818 1.17233 0.92442 1.01629 0.80732 1.91577 1.89384 1.92622 1.36716 1.20885 0.95769 0.99531 0.95477 1.20552 0.84252 1.07970 0.95255 1.43271 1.02151 0.98363 1.00817 1.94550 1.49658 1.48411 1.46449 1.94526 1.80444 1.55263 1.03233 1.22339 0.96389 0.88939 0.99723 1.21946 0.95380 0.97144 0.91491 0.92909 0.99113 0.95141 0.95018 0.90813 0.89985 0.94289 0.87157 0.92990 0.82616 0.82778 0.81900 0.93955 0.91905 0.95627 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.51 -14.23 8.47 -34.44 -0.29 -14.53 16 8 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 9 C 0.19 5.10 4.72 -4.98 -0.02 5.07 16 10 N -0.54 -11.63 4.70 -235.91 -1.11 -12.74 16 11 C 0.06 1.03 5.61 -3.77 -0.02 1.01 16 12 C 0.07 1.01 5.35 -3.77 -0.02 0.99 16 13 N -0.53 -7.37 3.63 -235.91 -0.86 -8.22 16 14 C 0.08 0.82 4.13 -4.98 -0.02 0.80 16 15 C -0.02 -0.15 4.61 -104.62 -0.48 -0.64 16 16 C -0.09 -0.60 9.22 -39.60 -0.36 -0.97 16 17 C -0.10 -0.65 10.03 -39.52 -0.40 -1.05 16 18 C 0.10 0.81 7.30 -39.42 -0.29 0.53 16 19 F -0.12 -1.07 17.27 2.25 0.04 -1.03 16 20 C -0.10 -0.92 9.54 -39.51 -0.38 -1.30 16 21 C 0.00 0.04 6.83 -79.97 -0.55 -0.51 16 22 N 0.03 0.44 4.45 33.95 0.15 0.59 16 23 O -0.18 -2.73 18.46 -29.46 -0.54 -3.27 16 24 O -0.11 -1.55 13.85 -29.46 -0.41 -1.96 16 25 C 0.05 0.81 5.44 -3.77 -0.02 0.78 16 26 C 0.07 1.35 5.43 -3.76 -0.02 1.33 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 29 H 0.03 0.85 8.03 -51.93 -0.42 0.44 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.08 1.08 7.47 -51.93 -0.39 0.69 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.11 1.15 6.03 -51.93 -0.31 0.84 16 35 H 0.05 0.46 7.85 -51.93 -0.41 0.05 16 36 H 0.16 0.71 7.99 -52.49 -0.42 0.29 16 37 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 38 H 0.16 1.42 7.62 -52.49 -0.40 1.02 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.83 7.03 -51.93 -0.37 0.47 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 1.78 6.79 -51.93 -0.35 1.43 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -31.80 349.70 -10.24 -42.03 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -5.53 Total: -4.12 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -2.97 Total: -6.99 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -1.08 Total: -46.47 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.95 Total: -5.23 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.80 -10.24 -42.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595392343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.569 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds