Wall clock time and date at job start Tue Mar 31 2020 14:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00235 * 2 1 4 4 H 1.48510 * 109.46639 * 270.00368 * 3 2 1 5 5 H 1.48503 * 109.46956 * 29.99768 * 3 2 1 6 6 H 1.48494 * 109.47530 * 150.00081 * 3 2 1 7 7 C 1.37879 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00065 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99951 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47249 * 180.02562 * 9 7 2 11 11 C 1.46955 * 111.00359 * 170.00072 * 10 9 7 12 12 C 1.53044 * 109.36638 * 183.18768 * 11 10 9 13 13 N 1.46962 * 109.36423 * 301.60049 * 12 11 10 14 14 C 1.46903 * 110.99815 * 183.18952 * 13 12 11 15 15 C 1.50698 * 109.46856 * 164.72195 * 14 13 12 16 16 C 1.38271 * 119.97437 * 106.92162 * 15 14 13 17 17 C 1.38167 * 120.02702 * 179.97438 * 16 15 14 18 18 C 1.38478 * 119.97839 * 0.02562 * 17 16 15 19 19 F 1.35094 * 120.03240 * 180.02562 * 18 17 16 20 20 C 1.38442 * 119.94566 * 359.97438 * 18 17 16 21 21 C 1.38216 * 119.97592 * 286.92140 * 15 14 13 22 22 N 1.48005 * 119.98601 * 0.27813 * 21 15 14 23 23 O 1.21807 * 119.99814 * 174.20440 * 22 21 15 24 24 O 1.21792 * 120.00112 * 354.20615 * 22 21 15 25 25 C 1.46952 * 110.88181 * 59.32178 * 13 12 11 26 26 C 1.46962 * 110.99815 * 293.80220 * 10 9 7 27 27 H 0.97002 * 120.00074 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47081 * 60.00280 * 9 7 2 29 29 H 1.08999 * 109.47038 * 299.99958 * 9 7 2 30 30 H 1.09000 * 109.48460 * 63.21974 * 11 10 9 31 31 H 1.08996 * 109.48376 * 303.15948 * 11 10 9 32 32 H 1.09002 * 109.49178 * 181.63040 * 12 11 10 33 33 H 1.09002 * 109.48978 * 61.56678 * 12 11 10 34 34 H 1.09000 * 109.47278 * 44.72309 * 14 13 12 35 35 H 1.08998 * 109.47158 * 284.72143 * 14 13 12 36 36 H 1.08002 * 119.98603 * 359.97438 * 16 15 14 37 37 H 1.08003 * 120.01486 * 180.02562 * 17 16 15 38 38 H 1.07999 * 120.01321 * 180.02562 * 20 18 17 39 39 H 1.08995 * 109.49026 * 60.64288 * 25 13 12 40 40 H 1.08996 * 109.49156 * 180.71151 * 25 13 12 41 41 H 1.09002 * 109.48789 * 296.77794 * 26 10 9 42 42 H 1.08995 * 109.48616 * 56.84482 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5209 -4.8941 0.2377 12 6 2.5564 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2741 -7.1758 -0.9460 15 6 4.7605 -7.4207 -2.3512 16 6 6.0454 -7.0576 -2.7105 17 6 6.4927 -7.2822 -3.9984 18 6 5.6536 -7.8706 -4.9296 19 9 6.0900 -8.0911 -6.1889 20 6 4.3673 -8.2337 -4.5687 21 6 3.9220 -8.0081 -3.2797 22 7 2.5449 -8.3906 -2.8952 23 8 1.7717 -8.8102 -3.7377 24 8 2.1848 -8.2858 -1.7365 25 6 4.0042 -4.7810 -1.1842 26 6 2.9687 -3.6562 -1.2559 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 0.8254 -5.0915 -0.5780 31 1 0.9733 -4.8433 1.1787 32 1 2.0485 -6.9718 0.4571 33 1 3.2355 -5.8353 1.1419 34 1 3.7833 -8.0734 -0.5698 35 1 5.1213 -6.9296 -0.3060 36 1 6.6996 -6.5983 -1.9842 37 1 7.4965 -6.9988 -4.2787 38 1 3.7121 -8.6931 -5.2939 39 1 4.6997 -4.5835 -0.3686 40 1 4.5518 -4.8316 -2.1253 41 1 2.2896 -3.8396 -2.0885 42 1 3.4766 -2.7032 -1.4035 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595392343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:32 Heat of formation + Delta-G solvation = -16.646437 kcal Electronic energy + Delta-G solvation = -27752.854687 eV Core-core repulsion = 23650.444944 eV Total energy + Delta-G solvation = -4102.409742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.19497 -43.23391 -40.75694 -39.76082 -37.68691 -36.64545 -34.65764 -33.14740 -32.74923 -31.78604 -29.93026 -28.13324 -27.13582 -25.32200 -24.51765 -23.94327 -23.30242 -22.68990 -20.65571 -20.30799 -19.68869 -18.54778 -18.48733 -17.83266 -17.53758 -17.34437 -16.93793 -16.84938 -16.42800 -15.94201 -15.82420 -15.46011 -15.19348 -15.03501 -14.78439 -14.59978 -14.03885 -13.79061 -13.50272 -13.37767 -13.10328 -12.96566 -12.87191 -12.67742 -12.55912 -12.42706 -12.24013 -12.16534 -12.07398 -11.98343 -11.64070 -11.46651 -11.17366 -10.73472 -10.62971 -10.09500 -9.30897 -9.04840 -8.20913 -6.32097 -1.26323 -0.33559 0.24947 0.42961 1.40900 1.42870 1.54509 2.02019 2.39944 2.79435 2.96353 3.11303 3.25146 3.30073 3.32784 3.63670 3.69526 3.96136 4.02550 4.13972 4.23763 4.37245 4.44703 4.47282 4.55285 4.58947 4.67803 4.73205 4.76862 4.91050 4.91852 4.99721 5.02425 5.07878 5.20797 5.22200 5.28181 5.46523 5.63013 6.00558 6.03439 6.11746 6.33355 6.58629 6.60836 6.84066 7.37984 8.90690 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.003203 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.622542 B = 8739.871927 C = 9530.568351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.208 3.792 10 N -0.537 5.537 11 C 0.054 3.946 12 C 0.082 3.918 13 N -0.545 5.545 14 C 0.081 3.919 15 C -0.023 4.023 16 C -0.074 4.074 17 C -0.080 4.080 18 C 0.098 3.902 19 F -0.128 7.128 20 C -0.107 4.107 21 C -0.017 4.017 22 N 0.033 4.967 23 O -0.227 6.227 24 O -0.116 6.116 25 C 0.070 3.930 26 C 0.069 3.931 27 H 0.264 0.736 28 H -0.048 1.048 29 H 0.003 0.997 30 H 0.009 0.991 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.193 0.807 37 H 0.192 0.808 38 H 0.159 0.841 39 H 0.055 0.945 40 H 0.086 0.914 41 H -0.001 1.001 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.441 -18.735 -6.141 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.082 3.918 10 N -0.262 5.262 11 C -0.075 4.075 12 C -0.045 4.045 13 N -0.270 5.270 14 C -0.046 4.046 15 C -0.026 4.026 16 C -0.093 4.093 17 C -0.099 4.099 18 C 0.077 3.923 19 F -0.106 7.106 20 C -0.127 4.127 21 C -0.101 4.101 22 N 0.549 4.451 23 O -0.426 6.426 24 O -0.345 6.345 25 C -0.058 4.058 26 C -0.060 4.060 27 H 0.073 0.927 28 H -0.030 1.030 29 H 0.021 0.979 30 H 0.027 0.973 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.210 0.790 37 H 0.209 0.791 38 H 0.176 0.824 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.018 0.982 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.910 -18.500 -6.492 27.239 hybrid contribution -1.181 0.817 -0.500 1.520 sum 17.729 -17.683 -6.991 25.998 Atomic orbital electron populations 1.70108 1.07965 1.27950 1.51750 1.25989 0.95733 1.03454 0.94723 0.85329 0.78651 0.77918 0.78389 1.19894 1.20854 1.18398 1.21448 0.93688 0.90809 1.50096 0.91482 1.19352 0.90165 0.89323 0.93004 1.62268 1.27057 1.02913 1.33982 1.22174 0.95942 0.89747 0.99623 1.21989 0.95022 0.97965 0.89531 1.61955 1.25979 1.02796 1.36318 1.21365 0.96104 0.96392 0.90761 1.20107 0.93524 0.93008 0.95920 1.21477 0.93360 0.97424 0.97025 1.22002 1.01865 0.94160 0.91826 1.17379 0.92107 1.01744 0.81038 1.91577 1.89264 1.92685 1.37083 1.20947 0.96726 1.00015 0.95010 1.20681 0.82674 1.10185 0.96520 1.43685 1.03262 0.97725 1.00420 1.94536 1.51170 1.50332 1.46553 1.94483 1.81260 1.55131 1.03583 1.22150 0.94649 0.87498 1.01492 1.21971 0.95685 0.98831 0.89480 0.92701 1.03026 0.97866 0.97299 0.90985 0.88368 0.93068 0.87253 0.89866 0.79014 0.79092 0.82363 0.92636 0.89537 0.98231 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.63 13.29 21.45 0.28 -57.34 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.97 44.19 29.54 68.60 2.03 46.21 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.52 -29.88 8.47 25.60 0.22 -29.66 16 8 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 9 C 0.21 11.53 4.72 85.56 0.40 11.94 16 10 N -0.54 -23.80 4.70 -900.29 -4.23 -28.04 16 11 C 0.05 2.04 5.61 86.31 0.48 2.52 16 12 C 0.08 2.30 5.35 86.31 0.46 2.76 16 13 N -0.55 -14.13 3.63 -900.29 -3.27 -17.39 16 14 C 0.08 1.42 4.13 85.56 0.35 1.77 16 15 C -0.02 -0.38 4.61 -19.86 -0.09 -0.47 16 16 C -0.07 -0.63 9.22 22.26 0.21 -0.43 16 17 C -0.08 -0.62 10.03 22.31 0.22 -0.39 16 18 C 0.10 1.33 7.30 22.38 0.16 1.49 16 19 F -0.13 -1.91 17.27 44.97 0.78 -1.13 16 20 C -0.11 -1.94 9.54 22.32 0.21 -1.73 16 21 C -0.02 -0.36 6.83 36.37 0.25 -0.11 16 22 N 0.03 0.92 4.45 -46.49 -0.21 0.71 16 23 O -0.23 -7.17 18.46 18.88 0.35 -6.82 16 24 O -0.12 -3.36 13.85 18.90 0.26 -3.09 16 25 C 0.07 1.91 5.44 86.31 0.47 2.37 16 26 C 0.07 2.71 5.43 86.31 0.47 3.18 16 27 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 28 H -0.05 -2.96 8.12 -2.39 -0.02 -2.98 16 29 H 0.00 0.19 8.03 -2.39 -0.02 0.17 16 30 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 2.69 8.07 -2.39 -0.02 2.67 16 32 H 0.10 2.45 7.47 -2.39 -0.02 2.43 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.11 1.99 6.03 -2.39 -0.01 1.98 16 35 H 0.08 1.01 7.85 -2.39 -0.02 0.99 16 36 H 0.19 0.35 7.99 -2.91 -0.02 0.33 16 37 H 0.19 0.14 8.06 -2.91 -0.02 0.12 16 38 H 0.16 2.89 7.62 -2.91 -0.02 2.87 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.09 1.96 7.03 -2.39 -0.02 1.95 16 41 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.07 2.95 6.79 -2.39 -0.02 2.93 16 Total: -1.00 -73.66 349.70 1.32 -72.34 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: 1.04 Total: 0.92 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 4.28 Total: -6.37 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -7.42 Total: -102.06 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.61 Total: -9.92 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.78 Total: -1.13 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -73.66 1.32 -72.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595392343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.693 kcal (2) G-P(sol) polarization free energy of solvation -73.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds