Wall clock time and date at job start Tue Mar 31 2020 14:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00264 * 2 1 4 4 H 1.48504 * 109.47033 * 264.78103 * 3 2 1 5 5 H 1.48498 * 109.47287 * 24.78252 * 3 2 1 6 6 H 1.48498 * 109.47286 * 144.78138 * 3 2 1 7 7 C 1.37880 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99657 * 5.49097 * 7 2 1 9 9 C 1.50699 * 120.00338 * 185.49238 * 7 2 1 10 10 H 1.09006 * 109.53314 * 335.09605 * 9 7 2 11 11 C 1.53117 * 109.50773 * 95.20106 * 9 7 2 12 12 C 1.53115 * 109.21374 * 177.62716 * 11 9 7 13 13 C 1.53035 * 109.27873 * 302.31444 * 12 11 9 14 14 N 1.46846 * 109.52651 * 59.18030 * 13 12 11 15 15 C 1.46895 * 111.00414 * 174.16061 * 14 13 12 16 16 C 1.53000 * 109.46833 * 66.04109 * 15 14 13 17 17 C 1.53003 * 109.47191 * 179.97438 * 16 15 14 18 18 O 1.42902 * 109.47692 * 180.02562 * 17 16 15 19 19 C 1.35915 * 117.00069 * 180.02562 * 18 17 16 20 20 C 1.38716 * 120.04659 * 359.72190 * 19 18 17 21 21 C 1.38141 * 119.95692 * 179.79569 * 20 19 18 22 22 C 1.38359 * 120.04481 * 0.46443 * 21 20 19 23 23 Cl 1.73605 * 119.95986 * 179.77329 * 22 21 20 24 24 C 1.38367 * 120.08808 * 359.78688 * 22 21 20 25 25 C 1.38146 * 120.03537 * 359.97438 * 24 22 21 26 26 C 1.46854 * 111.19454 * 298.25915 * 14 13 12 27 27 H 0.97001 * 119.99915 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.51970 * 57.68717 * 11 9 7 29 29 H 1.08997 * 109.51796 * 297.56604 * 11 9 7 30 30 H 1.09007 * 109.50421 * 62.25143 * 12 11 9 31 31 H 1.08998 * 109.50536 * 182.32945 * 12 11 9 32 32 H 1.09001 * 109.46338 * 179.19644 * 13 12 11 33 33 H 1.09000 * 109.46132 * 299.17195 * 13 12 11 34 34 H 1.08995 * 109.47436 * 186.04749 * 15 14 13 35 35 H 1.08998 * 109.47074 * 306.05088 * 15 14 13 36 36 H 1.08993 * 109.47823 * 300.00008 * 16 15 14 37 37 H 1.08997 * 109.47205 * 60.00829 * 16 15 14 38 38 H 1.08995 * 109.47329 * 300.00793 * 17 16 15 39 39 H 1.09003 * 109.46741 * 60.00408 * 17 16 15 40 40 H 1.08004 * 120.02246 * 0.02784 * 20 19 18 41 41 H 1.08007 * 119.98098 * 180.23067 * 21 20 19 42 42 H 1.07990 * 119.98189 * 179.97438 * 24 22 21 43 43 H 1.08001 * 120.02001 * 179.97438 * 25 24 22 44 44 H 1.09000 * 109.45909 * 181.75571 * 26 14 13 45 45 H 1.09000 * 109.46146 * 301.73111 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9827 -1.3943 5 1 1.3959 2.6820 0.5869 6 1 3.4872 1.4744 0.8074 7 6 2.0045 -1.1941 0.0005 8 1 1.4682 -2.1273 -0.0886 9 6 3.5063 -1.1971 0.1254 10 1 3.9036 -0.2465 -0.2308 11 6 3.8970 -1.3969 1.5924 12 6 5.4229 -1.4582 1.7036 13 6 5.9486 -2.5929 0.8215 14 7 5.5507 -2.3558 -0.5720 15 6 6.1543 -3.3507 -1.4685 16 6 5.5796 -4.7339 -1.1560 17 6 6.2078 -5.7701 -2.0901 18 8 5.6707 -7.0619 -1.7987 19 6 6.1275 -8.1026 -2.5440 20 6 7.0689 -7.8838 -3.5391 21 6 7.5351 -8.9435 -4.2927 22 6 7.0566 -10.2210 -4.0621 23 17 7.6396 -11.5503 -5.0144 24 6 6.1137 -10.4406 -3.0735 25 6 5.6488 -9.3842 -2.3144 26 6 4.0889 -2.3401 -0.7114 27 1 -0.4850 0.8401 0.0004 28 1 3.4672 -2.3287 1.9601 29 1 3.5216 -0.5634 2.1860 30 1 5.8503 -0.5118 1.3722 31 1 5.7051 -1.6418 2.7403 32 1 7.0360 -2.6301 0.8873 33 1 5.5315 -3.5406 1.1619 34 1 5.9318 -3.0900 -2.5031 35 1 7.2342 -3.3644 -1.3214 36 1 5.8022 -4.9946 -0.1214 37 1 4.4997 -4.7203 -1.3030 38 1 5.9849 -5.5092 -3.1246 39 1 7.2879 -5.7839 -1.9435 40 1 7.4399 -6.8861 -3.7220 41 1 8.2708 -8.7741 -5.0651 42 1 5.7411 -11.4384 -2.8952 43 1 4.9125 -9.5558 -1.5431 44 1 3.8256 -2.1936 -1.7589 45 1 3.6806 -3.2890 -0.3636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595609723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:19 Heat of formation + Delta-G solvation = -32.881784 kcal Electronic energy + Delta-G solvation = -24247.274265 eV Core-core repulsion = 20676.037224 eV Total energy + Delta-G solvation = -3571.237041 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.50379 -38.85573 -37.98643 -36.52080 -34.62904 -32.60789 -31.63885 -31.00627 -30.29313 -29.58344 -25.95230 -25.04668 -23.85994 -22.88734 -22.05341 -21.55041 -20.77291 -18.70898 -18.47477 -16.96003 -16.77698 -16.48799 -16.38699 -15.35351 -14.98797 -14.71003 -14.24714 -14.09444 -14.06260 -13.93389 -13.52063 -13.40938 -13.19622 -12.62950 -12.58838 -12.48936 -12.26951 -11.94012 -11.85589 -11.73010 -11.38348 -11.25274 -11.04929 -11.00197 -10.96930 -10.72369 -10.49034 -10.15176 -9.82176 -9.54108 -9.51732 -9.31851 -8.95063 -8.50004 -8.46396 -7.85625 -6.07524 -4.06902 0.83167 0.86618 1.82870 2.86900 3.24428 3.31599 3.39429 3.43453 4.29370 4.35533 4.41551 4.44067 4.69743 4.71815 4.81644 4.94795 5.07500 5.11161 5.20789 5.24243 5.30458 5.46427 5.50522 5.57092 5.62326 5.67522 5.81549 5.84967 5.87011 5.89399 6.05209 6.13304 6.17516 6.22450 6.32609 6.40184 6.49742 6.67639 6.81410 6.90499 7.06481 7.28913 7.44728 7.55426 7.57938 7.85714 8.52936 8.97288 9.56258 11.05646 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025322 B = 0.001998 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.510088 B =14009.682023 C =14437.663394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.512 4.512 8 H 0.070 0.930 9 C 0.020 3.980 10 H 0.039 0.961 11 C -0.113 4.113 12 C -0.121 4.121 13 C 0.059 3.941 14 N -0.537 5.537 15 C 0.061 3.939 16 C -0.161 4.161 17 C 0.064 3.936 18 O -0.309 6.309 19 C 0.142 3.858 20 C -0.200 4.200 21 C -0.068 4.068 22 C -0.078 4.078 23 Cl -0.076 7.076 24 C -0.070 4.070 25 C -0.143 4.143 26 C 0.067 3.933 27 H 0.263 0.737 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.067 0.933 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.541 -17.936 -6.336 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.188 1.188 7 C -0.551 4.551 8 H 0.089 0.911 9 C 0.000 4.000 10 H 0.057 0.943 11 C -0.151 4.151 12 C -0.159 4.159 13 C -0.069 4.069 14 N -0.260 5.260 15 C -0.068 4.068 16 C -0.200 4.200 17 C -0.012 4.012 18 O -0.222 6.222 19 C 0.096 3.904 20 C -0.218 4.218 21 C -0.087 4.087 22 C -0.105 4.105 23 Cl -0.047 7.047 24 C -0.089 4.089 25 C -0.162 4.162 26 C -0.060 4.060 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.086 0.914 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 17.448 -17.431 -6.388 25.477 hybrid contribution 0.223 0.044 -0.014 0.227 sum 17.671 -17.388 -6.402 25.604 Atomic orbital electron populations 1.69913 1.06362 1.26984 1.50623 1.25060 0.94675 0.99054 0.94267 0.86823 0.80171 0.83469 0.78854 1.20207 1.21834 1.18785 1.20950 0.89162 0.94499 1.50441 0.91137 1.19187 0.95855 0.94312 0.90609 0.94313 1.21868 0.91948 1.00850 1.00418 1.21690 0.98517 0.98328 0.97385 1.22038 0.98794 0.97449 0.88627 1.62325 1.11909 1.45852 1.05869 1.22091 0.98780 0.87611 0.98310 1.22364 1.02912 0.94808 0.99941 1.22896 0.97958 0.80158 1.00165 1.86148 1.63744 1.15667 1.56678 1.19146 0.92527 0.88376 0.90352 1.21271 1.01362 1.00311 0.98905 1.20839 0.98770 0.90284 0.98831 1.20769 1.01965 0.89236 0.98541 1.98362 1.88027 1.46851 1.71485 1.20863 0.95014 0.99551 0.93424 1.20447 1.03428 0.89441 1.02850 1.22352 0.83425 0.99214 1.00971 0.92688 0.93231 0.92969 0.92024 0.92906 0.92070 0.95114 0.90607 0.91205 0.90739 0.89845 0.91649 0.91918 0.84401 0.84719 0.84305 0.84112 0.91448 0.95214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.54 27.01 -169.99 -4.59 16.95 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.20 6.80 56.52 0.38 -5.81 16 7 C -0.51 -14.06 8.87 -34.44 -0.31 -14.36 16 8 H 0.07 2.11 8.06 -52.48 -0.42 1.68 16 9 C 0.02 0.45 1.94 -91.62 -0.18 0.27 16 10 H 0.04 0.93 5.27 -51.93 -0.27 0.65 16 11 C -0.11 -2.33 5.26 -26.61 -0.14 -2.47 16 12 C -0.12 -2.04 6.09 -26.65 -0.16 -2.21 16 13 C 0.06 0.89 5.05 -3.84 -0.02 0.87 16 14 N -0.54 -8.73 4.86 -234.59 -1.14 -9.87 16 15 C 0.06 0.76 5.36 -3.83 -0.02 0.74 16 16 C -0.16 -1.92 4.88 -26.73 -0.13 -2.05 16 17 C 0.06 0.63 4.74 37.16 0.18 0.81 16 18 O -0.31 -3.63 10.14 -19.47 -0.20 -3.83 16 19 C 0.14 1.49 6.69 -39.22 -0.26 1.22 16 20 C -0.20 -1.78 9.04 -39.44 -0.36 -2.13 16 21 C -0.07 -0.57 9.82 -39.57 -0.39 -0.96 16 22 C -0.08 -0.69 6.32 -39.49 -0.25 -0.94 16 23 Cl -0.08 -0.63 28.95 -51.86 -1.50 -2.13 16 24 C -0.07 -0.59 9.82 -39.57 -0.39 -0.98 16 25 C -0.14 -1.34 9.99 -39.44 -0.39 -1.74 16 26 C 0.07 1.31 4.11 -3.76 -0.02 1.30 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 33 H 0.03 0.47 6.75 -51.93 -0.35 0.11 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 36 H 0.07 0.93 6.68 -51.93 -0.35 0.58 16 37 H 0.08 1.17 6.51 -51.93 -0.34 0.83 16 38 H 0.07 0.58 7.65 -51.93 -0.40 0.19 16 39 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 40 H 0.14 1.00 6.30 -52.48 -0.33 0.66 16 41 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 42 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 45 H 0.03 0.59 6.61 -51.93 -0.34 0.24 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -30.05 368.31 -11.03 -41.08 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -7.00 Total: -0.52 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.93 Total: -20.71 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.37 Total: -36.40 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: -0.20 Total: -3.83 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.59 Total: 16.95 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.05 -11.03 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595609723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.199 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds