Wall clock time and date at job start Tue Mar 31 2020 14:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99944 * 2 1 4 4 H 1.48502 * 109.47463 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47222 * 300.00207 * 3 2 1 6 6 H 1.48503 * 109.46972 * 59.99800 * 3 2 1 7 7 C 1.37882 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99896 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00069 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.50373 * 299.92904 * 9 7 2 11 11 C 1.53121 * 109.50104 * 60.00303 * 9 7 2 12 12 C 1.53112 * 109.16112 * 177.63374 * 11 9 7 13 13 C 1.53032 * 109.27975 * 302.34667 * 12 11 9 14 14 N 1.46850 * 109.52553 * 59.17857 * 13 12 11 15 15 C 1.46895 * 111.00252 * 174.16262 * 14 13 12 16 16 C 1.53006 * 109.47174 * 66.04505 * 15 14 13 17 17 C 1.52996 * 109.46980 * 180.02562 * 16 15 14 18 18 O 1.42907 * 109.47132 * 180.02562 * 17 16 15 19 19 C 1.35898 * 117.00139 * 179.97438 * 18 17 16 20 20 C 1.38762 * 120.04723 * 359.97438 * 19 18 17 21 21 C 1.38132 * 119.96612 * 180.02562 * 20 19 18 22 22 C 1.38265 * 120.07198 * 0.02562 * 21 20 19 23 23 C 1.38369 * 120.09614 * 359.97438 * 22 21 20 24 24 Cl 1.73596 * 119.98337 * 180.28237 * 23 22 21 25 25 C 1.38285 * 120.02772 * 0.02562 * 23 22 21 26 26 C 1.46846 * 111.19574 * 298.26085 * 14 13 12 27 27 H 0.96995 * 120.00366 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.52500 * 57.72473 * 11 9 7 29 29 H 1.09008 * 109.57467 * 297.57273 * 11 9 7 30 30 H 1.09000 * 109.50105 * 182.40231 * 12 11 9 31 31 H 1.08997 * 109.53543 * 62.30626 * 12 11 9 32 32 H 1.09001 * 109.46153 * 299.16091 * 13 12 11 33 33 H 1.09004 * 109.45740 * 179.19070 * 13 12 11 34 34 H 1.08999 * 109.47399 * 306.04815 * 15 14 13 35 35 H 1.08995 * 109.47346 * 186.04543 * 15 14 13 36 36 H 1.08999 * 109.46704 * 59.99885 * 16 15 14 37 37 H 1.09003 * 109.46858 * 299.99962 * 16 15 14 38 38 H 1.08999 * 109.47613 * 60.00298 * 17 16 15 39 39 H 1.09003 * 109.47177 * 299.99623 * 17 16 15 40 40 H 1.07993 * 120.01687 * 359.97438 * 20 19 18 41 41 H 1.08001 * 119.96432 * 179.97438 * 21 20 19 42 42 H 1.07994 * 119.95142 * 179.97438 * 22 21 20 43 43 H 1.07997 * 120.03146 * 179.97438 * 25 23 22 44 44 H 1.09003 * 109.46361 * 181.75435 * 26 14 13 45 45 H 1.09005 * 109.46433 * 301.72738 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8902 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6255 -2.5575 0.8925 11 6 0.3701 -2.5820 -1.2479 12 6 -0.3463 -3.9350 -1.2691 13 6 0.6932 -5.0576 -1.2363 14 7 1.5099 -4.9350 -0.0220 15 6 2.4268 -6.0746 0.1131 16 6 3.4533 -6.0406 -1.0210 17 6 4.4079 -7.2280 -0.8805 18 8 5.3671 -7.1959 -1.9394 19 6 6.2955 -8.1881 -1.9612 20 6 6.2838 -9.1722 -0.9829 21 6 7.2286 -10.1796 -1.0064 22 6 8.1862 -10.2082 -2.0032 23 6 8.2005 -9.2284 -2.9801 24 17 9.3997 -9.2713 -4.2345 25 6 7.2566 -8.2180 -2.9605 26 6 2.2443 -3.6635 -0.0023 27 1 -0.4850 0.8400 0.0004 28 1 0.9910 -2.4845 -2.1385 29 1 -0.3674 -1.7795 -1.2286 30 1 -0.9421 -4.0171 -2.1782 31 1 -0.9973 -4.0163 -0.3987 32 1 1.3347 -4.9844 -2.1144 33 1 0.1858 -6.0224 -1.2367 34 1 1.8605 -7.0046 0.0628 35 1 2.9422 -6.0146 1.0716 36 1 4.0196 -5.1107 -0.9706 37 1 2.9378 -6.1007 -1.9795 38 1 3.8413 -8.1578 -0.9312 39 1 4.9234 -7.1684 0.0780 40 1 5.5369 -9.1500 -0.2032 41 1 7.2197 -10.9453 -0.2447 42 1 8.9242 -10.9965 -2.0194 43 1 7.2679 -7.4529 -3.7227 44 1 2.8636 -3.6156 0.8934 45 1 2.8786 -3.5966 -0.8863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595613540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:41 Heat of formation + Delta-G solvation = -32.273716 kcal Electronic energy + Delta-G solvation = -24278.608804 eV Core-core repulsion = 20707.398131 eV Total energy + Delta-G solvation = -3571.210673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48433 -38.70087 -37.93837 -36.61629 -34.54645 -32.59676 -31.41173 -30.71093 -29.91384 -29.69148 -25.77808 -24.95886 -23.66757 -22.95128 -21.94769 -21.50041 -20.82405 -18.70590 -18.27844 -16.67694 -16.46064 -16.34419 -16.24176 -15.36343 -15.05184 -14.66137 -14.31893 -14.18441 -14.02793 -13.92935 -13.46665 -13.28456 -12.99029 -12.45818 -12.33753 -12.23924 -11.99002 -11.82304 -11.80773 -11.55528 -11.37573 -11.16092 -11.04326 -10.99420 -10.87880 -10.64492 -10.40645 -10.04842 -9.82300 -9.47966 -9.23908 -9.05631 -8.70206 -8.60276 -8.30804 -7.70464 -5.97458 -4.03537 0.74155 0.97682 1.68189 2.95452 3.25668 3.30053 3.38283 3.41980 4.34712 4.38333 4.52781 4.62751 4.70321 4.74032 4.79548 4.91163 5.03517 5.16211 5.29927 5.31905 5.32912 5.47770 5.62043 5.73546 5.78289 5.79627 5.89447 5.94555 5.95767 6.05477 6.16116 6.24959 6.29710 6.41211 6.50008 6.70535 6.75218 6.95784 7.08636 7.20717 7.38818 7.61897 7.74347 7.79226 8.07869 8.17350 8.47903 9.00740 9.60915 11.08543 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.002169 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.353088 B =12903.515211 C =13883.090483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.054 3.946 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.059 3.941 14 N -0.532 5.532 15 C 0.061 3.939 16 C -0.161 4.161 17 C 0.065 3.935 18 O -0.309 6.309 19 C 0.150 3.850 20 C -0.207 4.207 21 C -0.066 4.066 22 C -0.155 4.155 23 C 0.004 3.996 24 Cl -0.065 7.065 25 C -0.149 4.149 26 C 0.063 3.937 27 H 0.259 0.741 28 H 0.029 0.971 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.027 0.973 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.142 0.858 44 H 0.059 0.941 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.135 -21.669 -3.579 25.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.069 4.069 14 N -0.255 5.255 15 C -0.068 4.068 16 C -0.200 4.200 17 C -0.011 4.011 18 O -0.222 6.222 19 C 0.103 3.897 20 C -0.225 4.225 21 C -0.085 4.085 22 C -0.173 4.173 23 C -0.023 4.023 24 Cl -0.036 7.036 25 C -0.168 4.168 26 C -0.064 4.064 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.077 0.923 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 11.718 -21.363 -3.408 24.603 hybrid contribution 1.112 0.796 -0.707 1.540 sum 12.830 -20.567 -4.115 24.587 Atomic orbital electron populations 1.69895 1.05836 1.26209 1.50772 1.24936 0.94827 0.98967 0.95152 0.86582 0.80158 0.83982 0.77538 1.19845 1.21098 1.21051 1.21180 0.92841 0.90655 1.50551 0.92815 1.18676 0.92635 0.90363 0.94846 0.94831 1.21656 1.00051 0.94738 0.98467 1.21681 0.97201 0.96497 1.00222 1.22075 0.95562 0.98728 0.90511 1.62284 1.22966 1.02436 1.37829 1.22102 0.92581 0.95324 0.96811 1.22377 0.97575 0.97871 1.02189 1.22913 0.89141 1.00111 0.88887 1.86139 1.40152 1.45570 1.50387 1.18827 0.89242 0.87942 0.93646 1.21434 1.03027 0.97072 1.01016 1.20906 0.93015 0.97325 0.97230 1.20945 1.01414 0.99614 0.95371 1.20573 0.92583 0.96899 0.92202 1.98382 1.55303 1.98196 1.51701 1.20249 0.95278 1.00673 1.00646 1.22367 0.96584 0.88460 0.98949 0.93119 0.95178 0.89089 0.93532 0.92106 0.95488 0.92463 0.91290 0.90808 0.89979 0.90723 0.91882 0.91694 0.84660 0.84739 0.84863 0.84064 0.92285 0.95698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.25 11.35 55.43 0.63 -24.62 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -13.98 8.57 -34.44 -0.29 -14.27 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.32 2.26 -91.69 -0.21 1.12 16 10 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.11 -2.60 5.02 -26.61 -0.13 -2.74 16 12 C -0.12 -2.27 6.09 -26.66 -0.16 -2.43 16 13 C 0.06 1.00 5.05 -3.83 -0.02 0.98 16 14 N -0.53 -9.33 4.86 -234.67 -1.14 -10.47 16 15 C 0.06 0.81 5.36 -3.82 -0.02 0.79 16 16 C -0.16 -2.05 4.89 -26.73 -0.13 -2.18 16 17 C 0.06 0.68 4.74 37.16 0.18 0.85 16 18 O -0.31 -3.82 10.14 -19.42 -0.20 -4.02 16 19 C 0.15 1.65 6.69 -39.22 -0.26 1.39 16 20 C -0.21 -1.84 9.04 -39.43 -0.36 -2.20 16 21 C -0.07 -0.50 10.04 -39.61 -0.40 -0.90 16 22 C -0.15 -1.25 9.83 -39.52 -0.39 -1.64 16 23 C 0.00 0.04 6.32 -39.52 -0.25 -0.21 16 24 Cl -0.06 -0.58 28.95 -51.86 -1.50 -2.08 16 25 C -0.15 -1.59 9.77 -39.40 -0.38 -1.97 16 26 C 0.06 1.30 4.06 -3.84 -0.02 1.28 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.09 2.40 6.15 -51.92 -0.32 2.08 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.03 0.46 6.75 -51.93 -0.35 0.11 16 33 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 34 H 0.07 0.79 8.06 -51.93 -0.42 0.37 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.21 6.51 -51.93 -0.34 0.87 16 37 H 0.07 1.01 6.68 -51.93 -0.35 0.66 16 38 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 39 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 40 H 0.14 0.98 6.30 -52.49 -0.33 0.65 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 45 H 0.02 0.52 6.61 -51.93 -0.34 0.17 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -28.79 368.68 -11.62 -40.41 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.01 Total: -0.49 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -2.94 Total: -20.51 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.51 Total: -35.09 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.20 Total: -4.02 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.79 -11.62 -40.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.140 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds