Wall clock time and date at job start Tue Mar 31 2020 14:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99944 * 2 1 4 4 H 1.48502 * 109.47463 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47222 * 300.00207 * 3 2 1 6 6 H 1.48503 * 109.46972 * 59.99800 * 3 2 1 7 7 C 1.37882 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99896 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00069 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.50373 * 299.92904 * 9 7 2 11 11 C 1.53121 * 109.50104 * 60.00303 * 9 7 2 12 12 C 1.53112 * 109.16112 * 177.63374 * 11 9 7 13 13 C 1.53032 * 109.27975 * 302.34667 * 12 11 9 14 14 N 1.46850 * 109.52553 * 59.17857 * 13 12 11 15 15 C 1.46895 * 111.00252 * 174.16262 * 14 13 12 16 16 C 1.53006 * 109.47174 * 66.04505 * 15 14 13 17 17 C 1.52996 * 109.46980 * 180.02562 * 16 15 14 18 18 O 1.42907 * 109.47132 * 180.02562 * 17 16 15 19 19 C 1.35898 * 117.00139 * 179.97438 * 18 17 16 20 20 C 1.38762 * 120.04723 * 359.97438 * 19 18 17 21 21 C 1.38132 * 119.96612 * 180.02562 * 20 19 18 22 22 C 1.38265 * 120.07198 * 0.02562 * 21 20 19 23 23 C 1.38369 * 120.09614 * 359.97438 * 22 21 20 24 24 Cl 1.73596 * 119.98337 * 180.28237 * 23 22 21 25 25 C 1.38285 * 120.02772 * 0.02562 * 23 22 21 26 26 C 1.46846 * 111.19574 * 298.26085 * 14 13 12 27 27 H 0.96995 * 120.00366 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.52500 * 57.72473 * 11 9 7 29 29 H 1.09008 * 109.57467 * 297.57273 * 11 9 7 30 30 H 1.09000 * 109.50105 * 182.40231 * 12 11 9 31 31 H 1.08997 * 109.53543 * 62.30626 * 12 11 9 32 32 H 1.09001 * 109.46153 * 299.16091 * 13 12 11 33 33 H 1.09004 * 109.45740 * 179.19070 * 13 12 11 34 34 H 1.08999 * 109.47399 * 306.04815 * 15 14 13 35 35 H 1.08995 * 109.47346 * 186.04543 * 15 14 13 36 36 H 1.08999 * 109.46704 * 59.99885 * 16 15 14 37 37 H 1.09003 * 109.46858 * 299.99962 * 16 15 14 38 38 H 1.08999 * 109.47613 * 60.00298 * 17 16 15 39 39 H 1.09003 * 109.47177 * 299.99623 * 17 16 15 40 40 H 1.07993 * 120.01687 * 359.97438 * 20 19 18 41 41 H 1.08001 * 119.96432 * 179.97438 * 21 20 19 42 42 H 1.07994 * 119.95142 * 179.97438 * 22 21 20 43 43 H 1.07997 * 120.03146 * 179.97438 * 25 23 22 44 44 H 1.09003 * 109.46361 * 181.75435 * 26 14 13 45 45 H 1.09005 * 109.46433 * 301.72738 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8902 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6255 -2.5575 0.8925 11 6 0.3701 -2.5820 -1.2479 12 6 -0.3463 -3.9350 -1.2691 13 6 0.6932 -5.0576 -1.2363 14 7 1.5099 -4.9350 -0.0220 15 6 2.4268 -6.0746 0.1131 16 6 3.4533 -6.0406 -1.0210 17 6 4.4079 -7.2280 -0.8805 18 8 5.3671 -7.1959 -1.9394 19 6 6.2955 -8.1881 -1.9612 20 6 6.2838 -9.1722 -0.9829 21 6 7.2286 -10.1796 -1.0064 22 6 8.1862 -10.2082 -2.0032 23 6 8.2005 -9.2284 -2.9801 24 17 9.3997 -9.2713 -4.2345 25 6 7.2566 -8.2180 -2.9605 26 6 2.2443 -3.6635 -0.0023 27 1 -0.4850 0.8400 0.0004 28 1 0.9910 -2.4845 -2.1385 29 1 -0.3674 -1.7795 -1.2286 30 1 -0.9421 -4.0171 -2.1782 31 1 -0.9973 -4.0163 -0.3987 32 1 1.3347 -4.9844 -2.1144 33 1 0.1858 -6.0224 -1.2367 34 1 1.8605 -7.0046 0.0628 35 1 2.9422 -6.0146 1.0716 36 1 4.0196 -5.1107 -0.9706 37 1 2.9378 -6.1007 -1.9795 38 1 3.8413 -8.1578 -0.9312 39 1 4.9234 -7.1684 0.0780 40 1 5.5369 -9.1500 -0.2032 41 1 7.2197 -10.9453 -0.2447 42 1 8.9242 -10.9965 -2.0194 43 1 7.2679 -7.4529 -3.7227 44 1 2.8636 -3.6156 0.8934 45 1 2.8786 -3.5966 -0.8863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595613540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:40 Heat of formation + Delta-G solvation = -47.380738 kcal Electronic energy + Delta-G solvation = -24279.263894 eV Core-core repulsion = 20707.398131 eV Total energy + Delta-G solvation = -3571.865763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.22896 -40.08050 -38.75637 -37.31841 -36.12129 -34.26743 -32.36003 -31.69391 -31.62461 -30.57527 -27.00504 -26.83652 -24.71804 -23.73448 -23.22780 -22.75830 -22.16017 -19.99534 -19.37201 -18.43399 -17.32603 -17.29979 -17.01327 -16.73405 -16.14263 -15.99912 -15.81152 -15.29675 -15.12165 -14.76329 -14.67169 -14.49852 -14.32883 -14.06712 -13.75220 -13.38264 -13.10834 -12.89090 -12.81755 -12.77066 -12.63936 -12.60114 -12.47260 -12.13373 -11.97669 -11.81312 -11.80703 -11.72441 -11.38231 -11.36153 -10.85367 -10.64938 -10.38080 -9.91603 -9.31077 -9.10908 -8.08470 -6.22275 0.07258 0.30171 0.99552 1.38942 1.40898 1.51992 2.18215 2.42180 2.59203 3.15843 3.18483 3.73238 3.85954 3.92633 4.02250 4.10608 4.13062 4.22893 4.29180 4.29963 4.33285 4.41033 4.44746 4.53285 4.66288 4.72000 4.75009 4.78884 4.91721 4.94416 5.07670 5.10971 5.12158 5.19461 5.23466 5.27888 5.32492 5.41578 5.53588 5.56685 5.63812 5.97071 6.12841 6.21540 6.32374 6.41092 6.46228 6.90919 7.45562 8.96245 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.002169 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.353088 B =12903.515211 C =13883.090483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.050 3.950 10 H -0.003 1.003 11 C -0.105 4.105 12 C -0.113 4.113 13 C 0.063 3.937 14 N -0.544 5.544 15 C 0.063 3.937 16 C -0.153 4.153 17 C 0.068 3.932 18 O -0.335 6.335 19 C 0.128 3.872 20 C -0.207 4.207 21 C -0.061 4.061 22 C -0.153 4.153 23 C -0.006 4.006 24 Cl -0.066 7.066 25 C -0.169 4.169 26 C 0.080 3.920 27 H 0.260 0.740 28 H 0.019 0.981 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.028 0.972 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.155 0.845 41 H 0.168 0.832 42 H 0.154 0.846 43 H 0.132 0.868 44 H 0.056 0.944 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.997 -24.247 -3.039 27.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.031 3.969 10 H 0.015 0.985 11 C -0.143 4.143 12 C -0.150 4.150 13 C -0.064 4.064 14 N -0.267 5.267 15 C -0.065 4.065 16 C -0.192 4.192 17 C -0.007 4.007 18 O -0.249 6.249 19 C 0.082 3.918 20 C -0.225 4.225 21 C -0.079 4.079 22 C -0.172 4.172 23 C -0.033 4.033 24 Cl -0.037 7.037 25 C -0.188 4.188 26 C -0.047 4.047 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.172 0.828 41 H 0.186 0.814 42 H 0.172 0.828 43 H 0.150 0.850 44 H 0.074 0.926 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 12.590 -23.960 -2.869 27.218 hybrid contribution 0.860 1.552 -0.868 1.975 sum 13.450 -22.408 -3.737 26.400 Atomic orbital electron populations 1.70035 1.07111 1.26960 1.51344 1.25712 0.95671 1.02284 0.94882 0.85596 0.79075 0.79905 0.77617 1.19264 1.20675 1.20524 1.21551 0.92900 0.92277 1.50553 0.93238 1.18613 0.93085 0.91472 0.93707 0.98500 1.21462 0.99084 0.96463 0.97293 1.21599 0.97670 0.94881 1.00894 1.22068 0.94914 0.99140 0.90309 1.62194 1.23891 1.02293 1.38334 1.22192 0.92409 0.94518 0.97349 1.22206 0.97655 0.97861 1.01482 1.22896 0.88901 0.99805 0.89073 1.86080 1.40940 1.46640 1.51256 1.19017 0.89424 0.88595 0.94729 1.21708 1.03657 0.96515 1.00647 1.21318 0.91819 0.97380 0.97389 1.21288 1.01809 0.99381 0.94725 1.20716 0.92546 0.97244 0.92810 1.98377 1.55223 1.98201 1.51879 1.20317 0.96241 1.01248 1.01035 1.21975 0.95302 0.88950 0.98516 0.93086 0.96217 0.92511 0.91396 0.92993 0.95417 0.88939 0.88250 0.89886 0.92696 0.91581 0.89494 0.90351 0.82759 0.81414 0.82821 0.85035 0.92574 0.96296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.67 11.35 21.45 0.24 -53.43 16 2 C 0.01 0.74 5.30 84.66 0.45 1.19 16 3 Si 0.95 44.32 29.54 68.60 2.03 46.34 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.53 -30.00 8.57 25.60 0.22 -29.78 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.05 2.56 2.26 -11.49 -0.03 2.54 16 10 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 11 C -0.10 -5.07 5.02 30.67 0.15 -4.92 16 12 C -0.11 -4.28 6.09 30.64 0.19 -4.09 16 13 C 0.06 2.02 5.05 86.32 0.44 2.45 16 14 N -0.54 -18.35 4.86 -896.37 -4.35 -22.71 16 15 C 0.06 1.51 5.36 86.31 0.46 1.98 16 16 C -0.15 -3.66 4.89 30.59 0.15 -3.51 16 17 C 0.07 1.26 4.74 71.98 0.34 1.60 16 18 O -0.34 -8.01 10.14 -92.41 -0.94 -8.95 16 19 C 0.13 2.68 6.69 22.50 0.15 2.83 16 20 C -0.21 -3.11 9.04 22.37 0.20 -2.91 16 21 C -0.06 -0.72 10.04 22.25 0.22 -0.49 16 22 C -0.15 -2.11 9.83 22.31 0.22 -1.89 16 23 C -0.01 -0.12 6.32 22.31 0.14 0.02 16 24 Cl -0.07 -1.13 28.95 -2.72 -0.08 -1.21 16 25 C -0.17 -3.58 9.77 22.39 0.22 -3.36 16 26 C 0.08 3.33 4.06 86.32 0.35 3.68 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 3.12 6.15 -2.38 -0.01 3.10 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.03 0.89 6.75 -2.39 -0.02 0.88 16 33 H 0.09 2.36 8.06 -2.39 -0.02 2.34 16 34 H 0.10 1.84 8.06 -2.39 -0.02 1.82 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 1.61 6.51 -2.39 -0.02 1.59 16 37 H 0.07 1.69 6.68 -2.39 -0.02 1.67 16 38 H 0.09 1.20 7.66 -2.39 -0.02 1.18 16 39 H 0.08 1.23 7.66 -2.39 -0.02 1.21 16 40 H 0.15 1.64 6.30 -2.91 -0.02 1.62 16 41 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 42 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.13 2.87 8.06 -2.91 -0.02 2.84 16 44 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 45 H 0.02 0.80 6.61 -2.38 -0.02 0.79 16 Total: -1.00 -65.10 368.68 1.75 -63.36 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.97 Total: 11.25 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 3.88 Total: -34.65 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -4.11 Total: -76.13 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.94 Total: -8.95 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -65.10 1.75 -63.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.977 kcal (2) G-P(sol) polarization free energy of solvation -65.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds