Wall clock time and date at job start Tue Mar 31 2020 14:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00293 * 2 1 4 4 H 1.48500 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46819 * 299.99699 * 3 2 1 6 6 H 1.48491 * 109.47197 * 59.99631 * 3 2 1 7 7 C 1.37881 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00399 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00240 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.53880 * 300.10497 * 9 7 2 11 11 C 1.53125 * 109.50124 * 60.19685 * 9 7 2 12 12 C 1.53113 * 109.16000 * 177.59501 * 11 9 7 13 13 C 1.53038 * 109.28179 * 302.35101 * 12 11 9 14 14 N 1.46844 * 109.52598 * 59.17894 * 13 12 11 15 15 C 1.46893 * 111.00165 * 174.16341 * 14 13 12 16 16 C 1.53005 * 109.47108 * 200.06000 * 15 14 13 17 17 H 1.09002 * 109.47103 * 300.49060 * 16 15 14 18 18 O 1.42894 * 109.46962 * 60.48973 * 16 15 14 19 19 C 1.53004 * 109.47088 * 180.48839 * 16 15 14 20 20 C 1.50703 * 109.46823 * 174.99865 * 19 16 15 21 21 C 1.38265 * 119.98850 * 90.00451 * 20 19 16 22 22 C 1.38221 * 120.01998 * 179.97438 * 21 20 19 23 23 C 1.38236 * 120.01748 * 359.97438 * 22 21 20 24 24 C 1.38333 * 119.98257 * 0.02562 * 23 22 21 25 25 Cl 1.73601 * 120.00729 * 180.02562 * 24 23 22 26 26 C 1.38185 * 119.99339 * 269.72487 * 20 19 16 27 27 C 1.46847 * 111.19704 * 298.26218 * 14 13 12 28 28 H 0.96996 * 119.99428 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.52114 * 297.50562 * 11 9 7 30 30 H 1.08998 * 109.51839 * 57.62861 * 11 9 7 31 31 H 1.09006 * 109.50386 * 62.29210 * 12 11 9 32 32 H 1.09003 * 109.50746 * 182.40323 * 12 11 9 33 33 H 1.09004 * 109.46104 * 299.16239 * 13 12 11 34 34 H 1.09004 * 109.46401 * 179.19432 * 13 12 11 35 35 H 1.09005 * 109.47250 * 80.06025 * 15 14 13 36 36 H 1.08999 * 109.47250 * 320.05782 * 15 14 13 37 37 H 0.96704 * 114.00398 * 60.00043 * 18 16 15 38 38 H 1.08993 * 109.47021 * 295.00025 * 19 16 15 39 39 H 1.09001 * 109.46693 * 55.00233 * 19 16 15 40 40 H 1.07995 * 119.98763 * 359.97438 * 21 20 19 41 41 H 1.08001 * 119.98571 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.00411 * 179.97438 * 23 22 21 43 43 H 1.08007 * 120.00858 * 0.02562 * 26 20 19 44 44 H 1.08997 * 109.46344 * 181.75911 * 27 14 13 45 45 H 1.08999 * 109.45962 * 301.73666 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6229 -2.5575 0.8884 11 6 0.3737 -2.5829 -1.2527 12 6 -0.3419 -3.9364 -1.2754 13 6 0.6981 -5.0585 -1.2389 14 7 1.5111 -4.9349 -0.0224 15 6 2.4282 -6.0740 0.1160 16 6 2.8807 -6.1904 1.5729 17 1 3.3843 -5.2710 1.8715 18 8 1.7422 -6.4033 2.4097 19 6 3.8454 -7.3695 1.7146 20 6 4.3862 -7.4099 3.1207 21 6 3.7240 -8.1335 4.0953 22 6 4.2197 -8.1713 5.3850 23 6 5.3780 -7.4862 5.7011 24 6 6.0407 -6.7621 4.7264 25 17 7.4957 -5.9020 5.1226 26 6 5.5467 -6.7284 3.4344 27 6 2.2448 -3.6630 -0.0011 28 1 -0.4849 0.8401 -0.0004 29 1 -0.3642 -1.7809 -1.2347 30 1 0.9971 -2.4845 -2.1414 31 1 -0.9951 -4.0173 -0.4065 32 1 -0.9351 -4.0193 -2.1861 33 1 1.3422 -4.9853 -2.1152 34 1 0.1913 -6.0236 -1.2405 35 1 3.2975 -5.9203 -0.5234 36 1 1.9169 -6.9901 -0.1799 37 1 1.2447 -7.2057 2.2005 38 1 3.3172 -8.2988 1.5016 39 1 4.6699 -7.2508 1.0115 40 1 2.8194 -8.6692 3.8486 41 1 3.7018 -8.7364 6.1459 42 1 5.7648 -7.5156 6.7090 43 1 6.0660 -6.1666 2.6720 44 1 2.8614 -3.6145 0.8964 45 1 2.8815 -3.5962 -0.8832 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595622451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:03 Heat of formation + Delta-G solvation = -46.424072 kcal Electronic energy + Delta-G solvation = -25004.394214 eV Core-core repulsion = 21432.569936 eV Total energy + Delta-G solvation = -3571.824279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.78011 -38.52674 -36.98833 -36.45034 -33.58748 -32.94474 -31.74393 -30.88317 -29.84602 -29.10416 -25.88641 -24.93961 -23.05178 -22.78029 -21.55122 -21.17091 -20.86686 -18.58501 -17.28381 -16.48813 -16.14101 -15.96050 -15.46802 -15.21244 -14.98566 -14.54479 -14.42491 -14.01934 -13.80104 -13.45057 -13.30371 -13.01055 -12.77694 -12.44414 -12.24871 -12.12677 -11.73831 -11.65035 -11.57829 -11.41019 -11.36894 -11.01697 -10.94216 -10.80677 -10.63191 -10.58105 -10.08110 -9.97877 -9.78120 -9.42540 -9.06557 -8.96549 -8.76478 -8.64852 -8.26719 -7.61306 -5.93947 -3.99778 1.01006 1.08985 1.97447 3.32338 3.40363 3.43529 3.44192 4.20879 4.45811 4.55813 4.56405 4.70872 4.83776 5.03307 5.08075 5.10019 5.27001 5.28248 5.36365 5.41609 5.52003 5.63781 5.68756 5.73261 5.77812 5.88078 6.02730 6.06709 6.11339 6.18013 6.26457 6.38035 6.41508 6.53263 6.63100 6.72922 6.77645 7.00666 7.25010 7.42298 7.66719 7.77615 7.82606 7.93041 8.13739 8.21545 8.52006 9.04529 9.64377 11.12190 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.003196 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.111234 B = 8759.616210 C =10539.461267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.035 0.965 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.065 3.935 14 N -0.528 5.528 15 C 0.023 3.977 16 C 0.120 3.880 17 H 0.100 0.900 18 O -0.537 6.537 19 C -0.115 4.115 20 C -0.056 4.056 21 C -0.100 4.100 22 C -0.107 4.107 23 C -0.119 4.119 24 C -0.032 4.032 25 Cl -0.075 7.075 26 C -0.110 4.110 27 C 0.068 3.932 28 H 0.258 0.742 29 H 0.090 0.910 30 H 0.028 0.972 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.020 0.980 34 H 0.055 0.945 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.363 0.637 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.058 0.942 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.094 -19.613 5.746 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.063 4.063 14 N -0.252 5.252 15 C -0.106 4.106 16 C 0.060 3.940 17 H 0.118 0.882 18 O -0.340 6.340 19 C -0.153 4.153 20 C -0.057 4.057 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.137 4.137 24 C -0.058 4.058 25 Cl -0.046 7.046 26 C -0.128 4.128 27 C -0.059 4.059 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.209 0.791 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.077 0.923 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 7.967 -18.842 6.442 21.447 hybrid contribution 1.073 0.547 -0.995 1.562 sum 9.040 -18.295 5.447 21.121 Atomic orbital electron populations 1.69904 1.05824 1.26145 1.50808 1.24928 0.94812 0.98907 0.95169 0.86592 0.80152 0.84054 0.77526 1.19874 1.21130 1.21022 1.21189 0.92815 0.90731 1.50512 0.92884 1.18648 0.92621 0.90216 0.94839 0.94658 1.21654 1.00046 0.94738 0.98463 1.21667 0.97181 0.96463 1.00154 1.22032 0.95543 0.98649 0.90081 1.61891 1.23826 1.01939 1.37511 1.22773 0.95982 0.95411 0.96390 1.21882 0.85638 0.96754 0.89737 0.88180 1.86709 1.41399 1.47605 1.58278 1.21412 1.00506 1.00443 0.92986 1.19675 0.93775 0.96149 0.96073 1.21101 0.99237 0.98744 0.92703 1.21090 0.95484 0.99140 0.96815 1.21018 0.96071 0.97761 0.98888 1.20889 0.90736 0.99063 0.95134 1.98372 1.36047 1.75989 1.94214 1.20966 0.96647 1.00141 0.95074 1.22341 0.96426 0.88667 0.98420 0.93154 0.89136 0.95277 0.92008 0.93630 0.96160 0.92624 0.94575 0.91498 0.79130 0.90325 0.89891 0.85499 0.85216 0.85233 0.85022 0.92343 0.96549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 11.36 55.43 0.63 -25.02 16 2 C 0.06 1.76 5.31 -17.82 -0.09 1.67 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.28 8.56 -34.44 -0.29 -14.57 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 10 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 11 C -0.11 -2.65 5.03 -26.61 -0.13 -2.78 16 12 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 13 C 0.06 1.12 5.43 -3.84 -0.02 1.10 16 14 N -0.53 -9.48 4.46 -234.67 -1.05 -10.52 16 15 C 0.02 0.32 4.66 -3.83 -0.02 0.30 16 16 C 0.12 1.53 3.02 -26.73 -0.08 1.44 16 17 H 0.10 1.55 6.83 -51.93 -0.35 1.19 16 18 O -0.54 -7.37 12.71 -35.23 -0.45 -7.82 16 19 C -0.12 -1.08 5.03 -27.88 -0.14 -1.22 16 20 C -0.06 -0.59 4.97 -104.63 -0.52 -1.11 16 21 C -0.10 -0.95 9.40 -39.58 -0.37 -1.33 16 22 C -0.11 -0.97 10.05 -39.59 -0.40 -1.37 16 23 C -0.12 -1.17 9.83 -39.55 -0.39 -1.56 16 24 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 25 Cl -0.08 -0.82 28.96 -51.86 -1.50 -2.32 16 26 C -0.11 -1.23 9.48 -39.55 -0.38 -1.60 16 27 C 0.07 1.45 4.51 -3.84 -0.02 1.44 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.82 7.93 -51.93 -0.41 0.41 16 35 H 0.04 0.48 8.00 -51.93 -0.42 0.07 16 36 H 0.07 0.76 7.79 -51.93 -0.40 0.36 16 37 H 0.36 3.54 9.05 45.56 0.41 3.95 16 38 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 39 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 43 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 44 H 0.06 1.25 6.71 -51.93 -0.35 0.90 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -30.60 374.06 -11.67 -42.27 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.45 Total: 2.71 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -3.47 Total: -21.45 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.42 Total: -35.54 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.45 Total: -7.82 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.60 -11.67 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595622451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.153 kcal (2) G-P(sol) polarization free energy of solvation -30.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds