Wall clock time and date at job start Tue Mar 31 2020 14:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00293 * 2 1 4 4 H 1.48500 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46819 * 299.99699 * 3 2 1 6 6 H 1.48491 * 109.47197 * 59.99631 * 3 2 1 7 7 C 1.37881 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00399 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00240 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.53880 * 300.10497 * 9 7 2 11 11 C 1.53125 * 109.50124 * 60.19685 * 9 7 2 12 12 C 1.53113 * 109.16000 * 177.59501 * 11 9 7 13 13 C 1.53038 * 109.28179 * 302.35101 * 12 11 9 14 14 N 1.46844 * 109.52598 * 59.17894 * 13 12 11 15 15 C 1.46893 * 111.00165 * 174.16341 * 14 13 12 16 16 C 1.53005 * 109.47108 * 200.06000 * 15 14 13 17 17 H 1.09002 * 109.47103 * 300.49060 * 16 15 14 18 18 O 1.42894 * 109.46962 * 60.48973 * 16 15 14 19 19 C 1.53004 * 109.47088 * 180.48839 * 16 15 14 20 20 C 1.50703 * 109.46823 * 174.99865 * 19 16 15 21 21 C 1.38265 * 119.98850 * 90.00451 * 20 19 16 22 22 C 1.38221 * 120.01998 * 179.97438 * 21 20 19 23 23 C 1.38236 * 120.01748 * 359.97438 * 22 21 20 24 24 C 1.38333 * 119.98257 * 0.02562 * 23 22 21 25 25 Cl 1.73601 * 120.00729 * 180.02562 * 24 23 22 26 26 C 1.38185 * 119.99339 * 269.72487 * 20 19 16 27 27 C 1.46847 * 111.19704 * 298.26218 * 14 13 12 28 28 H 0.96996 * 119.99428 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.52114 * 297.50562 * 11 9 7 30 30 H 1.08998 * 109.51839 * 57.62861 * 11 9 7 31 31 H 1.09006 * 109.50386 * 62.29210 * 12 11 9 32 32 H 1.09003 * 109.50746 * 182.40323 * 12 11 9 33 33 H 1.09004 * 109.46104 * 299.16239 * 13 12 11 34 34 H 1.09004 * 109.46401 * 179.19432 * 13 12 11 35 35 H 1.09005 * 109.47250 * 80.06025 * 15 14 13 36 36 H 1.08999 * 109.47250 * 320.05782 * 15 14 13 37 37 H 0.96704 * 114.00398 * 60.00043 * 18 16 15 38 38 H 1.08993 * 109.47021 * 295.00025 * 19 16 15 39 39 H 1.09001 * 109.46693 * 55.00233 * 19 16 15 40 40 H 1.07995 * 119.98763 * 359.97438 * 21 20 19 41 41 H 1.08001 * 119.98571 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.00411 * 179.97438 * 23 22 21 43 43 H 1.08007 * 120.00858 * 0.02562 * 26 20 19 44 44 H 1.08997 * 109.46344 * 181.75911 * 27 14 13 45 45 H 1.08999 * 109.45962 * 301.73666 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6229 -2.5575 0.8884 11 6 0.3737 -2.5829 -1.2527 12 6 -0.3419 -3.9364 -1.2754 13 6 0.6981 -5.0585 -1.2389 14 7 1.5111 -4.9349 -0.0224 15 6 2.4282 -6.0740 0.1160 16 6 2.8807 -6.1904 1.5729 17 1 3.3843 -5.2710 1.8715 18 8 1.7422 -6.4033 2.4097 19 6 3.8454 -7.3695 1.7146 20 6 4.3862 -7.4099 3.1207 21 6 3.7240 -8.1335 4.0953 22 6 4.2197 -8.1713 5.3850 23 6 5.3780 -7.4862 5.7011 24 6 6.0407 -6.7621 4.7264 25 17 7.4957 -5.9020 5.1226 26 6 5.5467 -6.7284 3.4344 27 6 2.2448 -3.6630 -0.0011 28 1 -0.4849 0.8401 -0.0004 29 1 -0.3642 -1.7809 -1.2347 30 1 0.9971 -2.4845 -2.1414 31 1 -0.9951 -4.0173 -0.4065 32 1 -0.9351 -4.0193 -2.1861 33 1 1.3422 -4.9853 -2.1152 34 1 0.1913 -6.0236 -1.2405 35 1 3.2975 -5.9203 -0.5234 36 1 1.9169 -6.9901 -0.1799 37 1 1.2447 -7.2057 2.2005 38 1 3.3172 -8.2988 1.5016 39 1 4.6699 -7.2508 1.0115 40 1 2.8194 -8.6692 3.8486 41 1 3.7018 -8.7364 6.1459 42 1 5.7648 -7.5156 6.7090 43 1 6.0660 -6.1666 2.6720 44 1 2.8614 -3.6145 0.8964 45 1 2.8815 -3.5962 -0.8832 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595622451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:02 Heat of formation + Delta-G solvation = -65.054849 kcal Electronic energy + Delta-G solvation = -25005.202106 eV Core-core repulsion = 21432.569936 eV Total energy + Delta-G solvation = -3572.632170 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.61198 -39.85376 -38.11751 -37.33738 -35.41074 -33.84445 -33.33722 -31.68013 -31.62830 -30.14486 -27.02988 -26.89050 -24.33591 -23.57823 -23.09305 -22.36785 -21.89689 -20.33667 -18.52285 -17.98296 -17.17616 -17.02793 -16.64563 -16.24375 -16.22381 -16.04463 -15.69079 -15.18526 -14.85447 -14.67076 -14.56529 -14.26979 -14.16514 -13.95612 -13.80951 -13.21779 -13.00110 -12.88156 -12.74020 -12.60213 -12.46791 -12.41935 -12.32841 -12.15195 -11.90562 -11.79943 -11.75128 -11.58523 -11.35437 -11.03829 -10.79516 -10.58569 -10.37968 -9.79289 -9.54910 -9.01962 -8.08826 -6.22957 0.24706 0.33511 1.16642 1.38257 1.39890 1.51231 2.41581 2.66891 3.07101 3.18010 3.65103 3.76938 3.91729 4.00950 4.14217 4.22063 4.23245 4.33051 4.34494 4.37144 4.45974 4.51708 4.59961 4.61894 4.73494 4.77690 4.81195 4.90970 4.92399 4.97469 5.07546 5.13381 5.17266 5.23449 5.29935 5.42102 5.43376 5.53117 5.61872 5.63171 5.92169 5.97893 6.14938 6.22312 6.42409 6.47296 6.90396 7.12697 7.44901 8.96053 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.003196 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.111234 B = 8759.616210 C =10539.461267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.048 0.952 9 C 0.054 3.946 10 H -0.009 1.009 11 C -0.105 4.105 12 C -0.111 4.111 13 C 0.068 3.932 14 N -0.540 5.540 15 C 0.025 3.975 16 C 0.127 3.873 17 H 0.062 0.938 18 O -0.560 6.560 19 C -0.102 4.102 20 C -0.068 4.068 21 C -0.104 4.104 22 C -0.109 4.109 23 C -0.126 4.126 24 C -0.050 4.050 25 Cl -0.082 7.082 26 C -0.129 4.129 27 C 0.085 3.915 28 H 0.260 0.740 29 H 0.055 0.945 30 H 0.022 0.978 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.025 0.975 34 H 0.094 0.906 35 H 0.042 0.958 36 H 0.102 0.898 37 H 0.382 0.618 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.157 0.843 42 H 0.143 0.857 43 H 0.128 0.872 44 H 0.048 0.952 45 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.137 -21.973 5.324 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.067 0.933 9 C 0.035 3.965 10 H 0.009 0.991 11 C -0.143 4.143 12 C -0.149 4.149 13 C -0.060 4.060 14 N -0.264 5.264 15 C -0.103 4.103 16 C 0.067 3.933 17 H 0.080 0.920 18 O -0.366 6.366 19 C -0.140 4.140 20 C -0.068 4.068 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.145 4.145 24 C -0.076 4.076 25 Cl -0.054 7.054 26 C -0.147 4.147 27 C -0.043 4.043 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.113 0.887 35 H 0.060 0.940 36 H 0.121 0.879 37 H 0.230 0.770 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.168 0.832 41 H 0.174 0.826 42 H 0.161 0.839 43 H 0.146 0.854 44 H 0.066 0.934 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 8.014 -21.229 6.014 23.475 hybrid contribution 1.012 1.261 -0.810 1.808 sum 9.026 -19.969 5.204 22.523 Atomic orbital electron populations 1.70047 1.07145 1.26959 1.51273 1.25713 0.95666 1.02283 0.94781 0.85592 0.79058 0.79847 0.77689 1.19268 1.20338 1.20656 1.21569 0.92881 0.92397 1.50731 0.93324 1.18552 0.92986 0.91345 0.93593 0.99067 1.21460 0.99059 0.96549 0.97220 1.21580 0.97661 0.94858 1.00765 1.22053 0.94906 0.99164 0.89845 1.61802 1.24703 1.01704 1.38237 1.22900 0.95730 0.94718 0.96997 1.21689 0.85930 0.96745 0.88957 0.91984 1.86668 1.42052 1.49123 1.58730 1.21303 1.00062 1.00045 0.92615 1.19870 0.93636 0.96322 0.96992 1.21446 0.99737 0.98346 0.92618 1.21462 0.95053 0.98697 0.97472 1.21294 0.96394 0.97499 0.99319 1.21087 0.90981 0.99865 0.95670 1.98361 1.36515 1.76253 1.94235 1.21115 0.97518 1.00840 0.95254 1.21932 0.95171 0.89432 0.97723 0.93077 0.92611 0.95915 0.93349 0.91191 0.95651 0.88748 0.94003 0.87948 0.76991 0.87339 0.89128 0.83240 0.82576 0.83885 0.85367 0.93387 0.96908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.56 11.36 21.45 0.24 -54.32 16 2 C 0.01 0.82 5.31 84.66 0.45 1.27 16 3 Si 0.95 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 7 C -0.54 -30.90 8.56 25.60 0.22 -30.68 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 9 C 0.05 2.85 2.26 -11.49 -0.03 2.83 16 10 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 11 C -0.10 -5.12 5.03 30.67 0.15 -4.97 16 12 C -0.11 -4.24 6.09 30.64 0.19 -4.05 16 13 C 0.07 2.15 5.43 86.33 0.47 2.62 16 14 N -0.54 -18.65 4.46 -896.37 -4.00 -22.64 16 15 C 0.02 0.60 4.66 86.31 0.40 1.00 16 16 C 0.13 3.03 3.02 30.60 0.09 3.12 16 17 H 0.06 1.96 6.83 -2.39 -0.02 1.94 16 18 O -0.56 -14.31 12.71 -148.98 -1.89 -16.21 16 19 C -0.10 -1.66 5.03 29.85 0.15 -1.51 16 20 C -0.07 -1.31 4.97 -19.87 -0.10 -1.41 16 21 C -0.10 -1.72 9.40 22.27 0.21 -1.51 16 22 C -0.11 -1.74 10.05 22.27 0.22 -1.52 16 23 C -0.13 -2.36 9.83 22.29 0.22 -2.14 16 24 C -0.05 -1.10 6.32 22.32 0.14 -0.96 16 25 Cl -0.08 -1.82 28.96 -2.72 -0.08 -1.90 16 26 C -0.13 -2.86 9.48 22.29 0.21 -2.65 16 27 C 0.09 3.69 4.51 86.32 0.39 4.08 16 28 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.06 3.10 6.16 -2.39 -0.01 3.08 16 30 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.09 2.33 7.93 -2.38 -0.02 2.31 16 35 H 0.04 1.00 8.00 -2.38 -0.02 0.98 16 36 H 0.10 1.81 7.79 -2.39 -0.02 1.79 16 37 H 0.38 6.18 9.05 -74.05 -0.67 5.51 16 38 H 0.11 1.13 8.08 -2.39 -0.02 1.11 16 39 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 40 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 43 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 44 H 0.05 2.14 6.71 -2.39 -0.02 2.12 16 45 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -69.45 374.06 0.00 -69.45 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.31 Total: 15.11 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 3.39 Total: -36.50 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -3.75 Total: -76.96 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -1.89 Total: -16.21 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.08 Total: -1.90 kcal Total: -69.45 0.00 -69.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595622451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.396 kcal (2) G-P(sol) polarization free energy of solvation -69.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds