Wall clock time and date at job start Tue Mar 31 2020 14:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99979 * 2 1 4 4 H 1.48496 * 109.46965 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47098 * 300.00050 * 3 2 1 6 6 H 1.48499 * 109.47196 * 59.99945 * 3 2 1 7 7 C 1.37881 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99510 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00196 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.53373 * 299.89774 * 9 7 2 11 11 C 1.53121 * 109.50607 * 59.99799 * 9 7 2 12 12 C 1.53124 * 109.16112 * 177.59492 * 11 9 7 13 13 C 1.53037 * 109.27807 * 302.34843 * 12 11 9 14 14 N 1.46841 * 109.52759 * 59.17592 * 13 12 11 15 15 C 1.46893 * 111.00217 * 174.15899 * 14 13 12 16 16 C 1.53002 * 109.47520 * 293.88337 * 15 14 13 17 17 H 1.08994 * 109.46941 * 60.65972 * 16 15 14 18 18 O 1.42903 * 109.46927 * 300.66271 * 16 15 14 19 19 C 1.52994 * 109.47209 * 180.66053 * 16 15 14 20 20 C 1.50696 * 109.47034 * 184.99863 * 19 16 15 21 21 C 1.38262 * 119.99476 * 90.00281 * 20 19 16 22 22 C 1.38221 * 120.02906 * 180.02562 * 21 20 19 23 23 C 1.38233 * 120.01307 * 359.97234 * 22 21 20 24 24 C 1.38337 * 119.98842 * 0.02562 * 23 22 21 25 25 Cl 1.73594 * 120.01472 * 180.02562 * 24 23 22 26 26 C 1.38203 * 119.99568 * 269.72526 * 20 19 16 27 27 C 1.46849 * 111.20192 * 298.26104 * 14 13 12 28 28 H 0.97000 * 120.00130 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.52319 * 57.69088 * 11 9 7 30 30 H 1.09002 * 109.57226 * 297.53450 * 11 9 7 31 31 H 1.08993 * 109.50047 * 182.40650 * 12 11 9 32 32 H 1.09005 * 109.50104 * 62.28393 * 12 11 9 33 33 H 1.09008 * 109.46093 * 299.16333 * 13 12 11 34 34 H 1.08997 * 109.45444 * 179.19078 * 13 12 11 35 35 H 1.09002 * 109.47133 * 173.87835 * 15 14 13 36 36 H 1.09001 * 109.47155 * 53.88599 * 15 14 13 37 37 H 0.96699 * 113.99464 * 299.99792 * 18 16 15 38 38 H 1.09006 * 109.46907 * 65.00169 * 19 16 15 39 39 H 1.08996 * 109.47410 * 305.00230 * 19 16 15 40 40 H 1.08004 * 119.98504 * 359.97398 * 21 20 19 41 41 H 1.08002 * 119.99205 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.00659 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.00155 * 0.02562 * 26 20 19 44 44 H 1.08994 * 109.46344 * 181.75533 * 27 14 13 45 45 H 1.08998 * 109.46074 * 301.72771 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6251 -2.5585 0.8909 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3448 -3.9348 -1.2724 13 6 0.6953 -5.0570 -1.2398 14 7 1.5112 -4.9348 -0.0250 15 6 2.4286 -6.0741 0.1098 16 6 1.6223 -7.3536 0.3419 17 1 0.9646 -7.5280 -0.5096 18 8 0.8384 -7.2139 1.5285 19 6 2.5785 -8.5376 0.4987 20 6 1.7843 -9.8139 0.6045 21 6 1.4614 -10.5237 -0.5373 22 6 0.7326 -11.6942 -0.4411 23 6 0.3266 -12.1562 0.7968 24 6 0.6494 -11.4466 1.9396 25 17 0.1404 -12.0265 3.4947 26 6 1.3839 -10.2779 1.8432 27 6 2.2449 -3.6630 -0.0038 28 1 -0.4850 0.8400 0.0004 29 1 0.9923 -2.4829 -2.1398 30 1 -0.3670 -1.7793 -1.2302 31 1 -0.9399 -4.0165 -2.1819 32 1 -0.9959 -4.0168 -0.4021 33 1 1.3375 -4.9826 -2.1175 34 1 0.1885 -6.0219 -1.2414 35 1 3.0948 -5.9060 0.9559 36 1 3.0176 -6.1762 -0.8017 37 1 1.3594 -7.0560 2.3277 38 1 3.1755 -8.4053 1.4011 39 1 3.2370 -8.5901 -0.3682 40 1 1.7781 -10.1629 -1.5048 41 1 0.4804 -12.2480 -1.3334 42 1 -0.2432 -13.0706 0.8718 43 1 1.6396 -9.7255 2.7353 44 1 2.8636 -3.6155 0.8923 45 1 2.8797 -3.5951 -0.8873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595622452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:06 Heat of formation + Delta-G solvation = -46.200870 kcal Electronic energy + Delta-G solvation = -24808.404434 eV Core-core repulsion = 21236.589834 eV Total energy + Delta-G solvation = -3571.814600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.86764 -38.58413 -37.01080 -36.52871 -33.60803 -32.98237 -31.71669 -30.99173 -29.94897 -29.09432 -25.92879 -24.96089 -22.95616 -22.90736 -21.77025 -21.37038 -20.61471 -18.58047 -17.35322 -16.52139 -16.21862 -16.01819 -15.58993 -15.20419 -14.94563 -14.83211 -14.31743 -14.04106 -13.73357 -13.53006 -13.33202 -13.30812 -12.74839 -12.41117 -12.23164 -12.17167 -11.81508 -11.73614 -11.62408 -11.50062 -11.29967 -11.08536 -10.96899 -10.87916 -10.66436 -10.57919 -10.05651 -10.02858 -9.81038 -9.43587 -9.13280 -9.00904 -8.81594 -8.67663 -8.28680 -7.61529 -5.95973 -4.02324 0.90212 1.02278 1.89545 3.30160 3.34819 3.38287 3.41530 4.17086 4.42533 4.46490 4.54174 4.64667 4.78374 4.89495 4.97268 5.07241 5.15292 5.26452 5.32459 5.34412 5.50802 5.54257 5.68773 5.71436 5.81488 5.87070 5.96399 6.03366 6.06391 6.10488 6.26726 6.31887 6.41578 6.52274 6.54102 6.75124 6.78039 6.98721 7.25253 7.41731 7.68080 7.75459 7.78960 7.90166 8.10968 8.20121 8.49744 9.02130 9.61895 11.09936 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026356 B = 0.002268 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.137535 B =12345.247873 C =12600.766237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.063 3.937 14 N -0.527 5.527 15 C 0.023 3.977 16 C 0.118 3.882 17 H 0.096 0.904 18 O -0.540 6.540 19 C -0.117 4.117 20 C -0.057 4.057 21 C -0.116 4.116 22 C -0.107 4.107 23 C -0.119 4.119 24 C -0.032 4.032 25 Cl -0.075 7.075 26 C -0.095 4.095 27 C 0.068 3.932 28 H 0.259 0.741 29 H 0.028 0.972 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.019 0.981 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.369 0.631 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.057 0.943 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.239 -24.189 0.283 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.065 4.065 14 N -0.251 5.251 15 C -0.106 4.106 16 C 0.058 3.942 17 H 0.114 0.886 18 O -0.344 6.344 19 C -0.155 4.155 20 C -0.057 4.057 21 C -0.134 4.134 22 C -0.125 4.125 23 C -0.138 4.138 24 C -0.059 4.059 25 Cl -0.046 7.046 26 C -0.113 4.113 27 C -0.058 4.058 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.215 0.785 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.076 0.924 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.239 -24.203 0.402 24.310 hybrid contribution 1.480 0.939 -0.302 1.778 sum 3.719 -23.264 0.100 23.560 Atomic orbital electron populations 1.69909 1.05824 1.26187 1.50713 1.24943 0.94824 0.98944 0.95184 0.86582 0.80090 0.84025 0.77542 1.19905 1.21121 1.21032 1.21183 0.92798 0.90712 1.50598 0.92878 1.18657 0.92597 0.90196 0.94915 0.94707 1.21653 1.00016 0.94801 0.98377 1.21659 0.97217 0.96361 1.00215 1.22053 0.95659 0.98904 0.89856 1.61903 1.23477 1.01662 1.38035 1.22788 0.94866 0.92300 1.00690 1.21893 0.92153 0.90739 0.89382 0.88580 1.86646 1.36433 1.94470 1.16804 1.21421 0.97785 0.92362 1.03905 1.19699 0.97806 0.95773 0.92412 1.21171 0.98672 0.95138 0.98408 1.21073 0.97907 0.96497 0.97014 1.21024 1.01155 1.00411 0.91214 1.20921 1.01441 0.96852 0.86638 1.98372 1.89916 1.88449 1.27843 1.20912 0.97681 0.94409 0.98319 1.22319 0.96393 0.88627 0.98499 0.93116 0.95315 0.89135 0.93677 0.91956 0.96251 0.92337 0.90876 0.94920 0.78475 0.90204 0.89764 0.85501 0.85196 0.85218 0.85001 0.92438 0.96529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 11.35 55.43 0.63 -24.83 16 2 C 0.06 1.73 5.30 -17.81 -0.09 1.63 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.09 8.56 -34.44 -0.29 -14.38 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 10 H 0.03 0.98 8.14 -51.93 -0.42 0.55 16 11 C -0.11 -2.64 5.02 -26.60 -0.13 -2.77 16 12 C -0.12 -2.33 6.09 -26.65 -0.16 -2.50 16 13 C 0.06 1.11 5.29 -3.84 -0.02 1.09 16 14 N -0.53 -9.46 4.51 -234.67 -1.06 -10.51 16 15 C 0.02 0.30 4.63 -3.83 -0.02 0.29 16 16 C 0.12 1.37 2.83 -26.73 -0.08 1.29 16 17 H 0.10 1.22 6.47 -51.93 -0.34 0.88 16 18 O -0.54 -7.15 12.70 -35.23 -0.45 -7.59 16 19 C -0.12 -1.01 5.03 -27.89 -0.14 -1.15 16 20 C -0.06 -0.54 4.96 -104.63 -0.52 -1.05 16 21 C -0.12 -1.01 9.70 -39.58 -0.38 -1.39 16 22 C -0.11 -0.87 10.05 -39.59 -0.40 -1.26 16 23 C -0.12 -1.05 9.83 -39.55 -0.39 -1.44 16 24 C -0.03 -0.32 6.32 -39.50 -0.25 -0.57 16 25 Cl -0.07 -0.72 28.96 -51.86 -1.50 -2.22 16 26 C -0.09 -0.94 9.20 -39.54 -0.36 -1.30 16 27 C 0.07 1.43 4.68 -3.83 -0.02 1.42 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.06 0.93 6.24 -51.93 -0.32 0.61 16 35 H 0.07 0.93 7.98 -51.93 -0.41 0.51 16 36 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 37 H 0.37 3.79 9.04 45.56 0.41 4.21 16 38 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 42 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.06 1.18 8.01 -51.93 -0.42 0.77 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -30.10 373.46 -11.67 -41.77 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.43 Total: 2.46 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -3.47 Total: -20.93 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.43 Total: -35.34 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.45 Total: -7.59 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.10 -11.67 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595622452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.434 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds