Wall clock time and date at job start Tue Mar 31 2020 14:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99979 * 2 1 4 4 H 1.48496 * 109.46965 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47098 * 300.00050 * 3 2 1 6 6 H 1.48499 * 109.47196 * 59.99945 * 3 2 1 7 7 C 1.37881 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99510 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00196 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.53373 * 299.89774 * 9 7 2 11 11 C 1.53121 * 109.50607 * 59.99799 * 9 7 2 12 12 C 1.53124 * 109.16112 * 177.59492 * 11 9 7 13 13 C 1.53037 * 109.27807 * 302.34843 * 12 11 9 14 14 N 1.46841 * 109.52759 * 59.17592 * 13 12 11 15 15 C 1.46893 * 111.00217 * 174.15899 * 14 13 12 16 16 C 1.53002 * 109.47520 * 293.88337 * 15 14 13 17 17 H 1.08994 * 109.46941 * 60.65972 * 16 15 14 18 18 O 1.42903 * 109.46927 * 300.66271 * 16 15 14 19 19 C 1.52994 * 109.47209 * 180.66053 * 16 15 14 20 20 C 1.50696 * 109.47034 * 184.99863 * 19 16 15 21 21 C 1.38262 * 119.99476 * 90.00281 * 20 19 16 22 22 C 1.38221 * 120.02906 * 180.02562 * 21 20 19 23 23 C 1.38233 * 120.01307 * 359.97234 * 22 21 20 24 24 C 1.38337 * 119.98842 * 0.02562 * 23 22 21 25 25 Cl 1.73594 * 120.01472 * 180.02562 * 24 23 22 26 26 C 1.38203 * 119.99568 * 269.72526 * 20 19 16 27 27 C 1.46849 * 111.20192 * 298.26104 * 14 13 12 28 28 H 0.97000 * 120.00130 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.52319 * 57.69088 * 11 9 7 30 30 H 1.09002 * 109.57226 * 297.53450 * 11 9 7 31 31 H 1.08993 * 109.50047 * 182.40650 * 12 11 9 32 32 H 1.09005 * 109.50104 * 62.28393 * 12 11 9 33 33 H 1.09008 * 109.46093 * 299.16333 * 13 12 11 34 34 H 1.08997 * 109.45444 * 179.19078 * 13 12 11 35 35 H 1.09002 * 109.47133 * 173.87835 * 15 14 13 36 36 H 1.09001 * 109.47155 * 53.88599 * 15 14 13 37 37 H 0.96699 * 113.99464 * 299.99792 * 18 16 15 38 38 H 1.09006 * 109.46907 * 65.00169 * 19 16 15 39 39 H 1.08996 * 109.47410 * 305.00230 * 19 16 15 40 40 H 1.08004 * 119.98504 * 359.97398 * 21 20 19 41 41 H 1.08002 * 119.99205 * 179.97438 * 22 21 20 42 42 H 1.08003 * 120.00659 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.00155 * 0.02562 * 26 20 19 44 44 H 1.08994 * 109.46344 * 181.75533 * 27 14 13 45 45 H 1.08998 * 109.46074 * 301.72771 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6251 -2.5585 0.8909 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3448 -3.9348 -1.2724 13 6 0.6953 -5.0570 -1.2398 14 7 1.5112 -4.9348 -0.0250 15 6 2.4286 -6.0741 0.1098 16 6 1.6223 -7.3536 0.3419 17 1 0.9646 -7.5280 -0.5096 18 8 0.8384 -7.2139 1.5285 19 6 2.5785 -8.5376 0.4987 20 6 1.7843 -9.8139 0.6045 21 6 1.4614 -10.5237 -0.5373 22 6 0.7326 -11.6942 -0.4411 23 6 0.3266 -12.1562 0.7968 24 6 0.6494 -11.4466 1.9396 25 17 0.1404 -12.0265 3.4947 26 6 1.3839 -10.2779 1.8432 27 6 2.2449 -3.6630 -0.0038 28 1 -0.4850 0.8400 0.0004 29 1 0.9923 -2.4829 -2.1398 30 1 -0.3670 -1.7793 -1.2302 31 1 -0.9399 -4.0165 -2.1819 32 1 -0.9959 -4.0168 -0.4021 33 1 1.3375 -4.9826 -2.1175 34 1 0.1885 -6.0219 -1.2414 35 1 3.0948 -5.9060 0.9559 36 1 3.0176 -6.1762 -0.8017 37 1 1.3594 -7.0560 2.3277 38 1 3.1755 -8.4053 1.4011 39 1 3.2370 -8.5901 -0.3682 40 1 1.7781 -10.1629 -1.5048 41 1 0.4804 -12.2480 -1.3334 42 1 -0.2432 -13.0706 0.8718 43 1 1.6396 -9.7255 2.7353 44 1 2.8636 -3.6155 0.8923 45 1 2.8797 -3.5951 -0.8873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595622452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:05 Heat of formation + Delta-G solvation = -64.034799 kcal Electronic energy + Delta-G solvation = -24809.177771 eV Core-core repulsion = 21236.589834 eV Total energy + Delta-G solvation = -3572.587937 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.62475 -39.86575 -38.10193 -37.32279 -35.39127 -33.80477 -33.33462 -31.72418 -31.62567 -30.12952 -27.04363 -26.85921 -24.18549 -23.59305 -23.38957 -22.27235 -21.79590 -20.33890 -18.50599 -17.96553 -17.20721 -16.97683 -16.59626 -16.29368 -16.25003 -16.05641 -15.72004 -15.03507 -14.91787 -14.68148 -14.51019 -14.35773 -14.20151 -13.89079 -13.82128 -13.27481 -12.93274 -12.86113 -12.67973 -12.55915 -12.49984 -12.42822 -12.33331 -12.14518 -11.91870 -11.78560 -11.72742 -11.60716 -11.37996 -11.05603 -10.68528 -10.64060 -10.35930 -9.77293 -9.54380 -9.02250 -8.07209 -6.21693 0.23575 0.37065 1.19755 1.40317 1.41912 1.53187 2.42870 2.67433 3.06791 3.19655 3.63758 3.75250 3.93916 3.99161 4.14838 4.17239 4.22010 4.31142 4.37851 4.42619 4.44909 4.47979 4.57264 4.64785 4.72699 4.76589 4.87093 4.89013 4.90862 4.99746 5.08837 5.12426 5.18288 5.22336 5.31630 5.41337 5.42854 5.53605 5.61791 5.64340 5.91962 5.98525 6.14126 6.23378 6.40982 6.47850 6.92171 7.02231 7.46395 8.97583 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026356 B = 0.002268 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.137535 B =12345.247873 C =12600.766237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.052 3.948 10 H -0.007 1.007 11 C -0.103 4.103 12 C -0.111 4.111 13 C 0.069 3.931 14 N -0.540 5.540 15 C 0.023 3.977 16 C 0.127 3.873 17 H 0.088 0.912 18 O -0.562 6.562 19 C -0.106 4.106 20 C -0.067 4.067 21 C -0.121 4.121 22 C -0.108 4.108 23 C -0.127 4.127 24 C -0.049 4.049 25 Cl -0.081 7.081 26 C -0.108 4.108 27 C 0.083 3.917 28 H 0.260 0.740 29 H 0.023 0.977 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.027 0.973 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.380 0.620 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.143 0.857 43 H 0.133 0.867 44 H 0.057 0.943 45 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.515 -25.655 -0.760 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.071 0.929 9 C 0.033 3.967 10 H 0.012 0.988 11 C -0.142 4.142 12 C -0.149 4.149 13 C -0.059 4.059 14 N -0.264 5.264 15 C -0.105 4.105 16 C 0.068 3.932 17 H 0.106 0.894 18 O -0.368 6.368 19 C -0.143 4.143 20 C -0.068 4.068 21 C -0.139 4.139 22 C -0.126 4.126 23 C -0.145 4.145 24 C -0.076 4.076 25 Cl -0.052 7.052 26 C -0.126 4.126 27 C -0.044 4.044 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.228 0.772 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.163 0.837 41 H 0.173 0.827 42 H 0.161 0.839 43 H 0.151 0.849 44 H 0.076 0.924 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 3.530 -25.689 -0.633 25.938 hybrid contribution 1.046 1.359 0.035 1.715 sum 4.575 -24.330 -0.598 24.764 Atomic orbital electron populations 1.70060 1.07255 1.26959 1.51383 1.25754 0.95648 1.02433 0.94873 0.85557 0.79125 0.79729 0.77536 1.18996 1.20683 1.20720 1.21562 0.92997 0.92146 1.50512 0.92919 1.18580 0.93025 0.91509 0.93545 0.98849 1.21458 0.99094 0.96134 0.97478 1.21571 0.97665 0.95130 1.00510 1.22004 0.95126 0.98732 0.90039 1.61809 1.24446 1.01758 1.38434 1.22908 0.94625 0.91242 1.01743 1.21806 0.92077 0.90744 0.88615 0.89388 1.86611 1.37782 1.94595 1.17813 1.21307 0.97158 0.90570 1.05303 1.19824 0.98199 0.96235 0.92493 1.21486 0.98299 0.95167 0.98980 1.21408 0.97169 0.96461 0.97583 1.21292 1.01137 1.00842 0.91246 1.21114 1.02210 0.97406 0.86842 1.98364 1.90009 1.88505 1.28310 1.21048 0.98089 0.94659 0.98840 1.21962 0.95138 0.88928 0.98393 0.93131 0.95830 0.92622 0.91515 0.93680 0.95463 0.89908 0.89980 0.93492 0.77228 0.89094 0.88033 0.83661 0.82743 0.83947 0.84899 0.92415 0.96692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.15 11.35 21.45 0.24 -53.91 16 2 C 0.01 0.64 5.30 84.65 0.45 1.09 16 3 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.53 -29.78 8.56 25.60 0.22 -29.56 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 9 C 0.05 2.69 2.26 -11.49 -0.03 2.66 16 10 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 11 C -0.10 -5.06 5.02 30.68 0.15 -4.90 16 12 C -0.11 -4.40 6.09 30.65 0.19 -4.22 16 13 C 0.07 2.29 5.29 86.33 0.46 2.75 16 14 N -0.54 -18.68 4.51 -896.38 -4.04 -22.73 16 15 C 0.02 0.56 4.63 86.31 0.40 0.96 16 16 C 0.13 2.63 2.83 30.59 0.09 2.71 16 17 H 0.09 1.97 6.47 -2.39 -0.02 1.96 16 18 O -0.56 -14.04 12.70 -148.98 -1.89 -15.93 16 19 C -0.11 -1.53 5.03 29.84 0.15 -1.38 16 20 C -0.07 -1.12 4.96 -19.87 -0.10 -1.22 16 21 C -0.12 -1.77 9.70 22.27 0.22 -1.56 16 22 C -0.11 -1.48 10.05 22.26 0.22 -1.26 16 23 C -0.13 -2.02 9.83 22.29 0.22 -1.80 16 24 C -0.05 -0.93 6.32 22.33 0.14 -0.79 16 25 Cl -0.08 -1.52 28.96 -2.72 -0.08 -1.60 16 26 C -0.11 -2.00 9.20 22.29 0.21 -1.79 16 27 C 0.08 3.47 4.68 86.33 0.40 3.87 16 28 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 3.09 6.15 -2.39 -0.01 3.08 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.08 2.40 6.24 -2.39 -0.01 2.39 16 35 H 0.08 1.87 7.98 -2.39 -0.02 1.85 16 36 H 0.05 1.05 8.12 -2.39 -0.02 1.03 16 37 H 0.38 7.34 9.04 -74.06 -0.67 6.67 16 38 H 0.09 1.13 8.08 -2.38 -0.02 1.11 16 39 H 0.10 1.14 8.09 -2.39 -0.02 1.12 16 40 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 42 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 44 H 0.06 2.36 8.01 -2.39 -0.02 2.34 16 45 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -66.29 373.46 -0.05 -66.34 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.31 Total: 16.23 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 3.39 Total: -34.43 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -3.80 Total: -76.63 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -1.89 Total: -15.93 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -66.29 -0.05 -66.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595622452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.308 kcal (2) G-P(sol) polarization free energy of solvation -66.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds