Wall clock time and date at job start Tue Mar 31 2020 13:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99958 * 2 1 4 4 H 1.48500 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46816 * 299.99758 * 3 2 1 6 6 H 1.48495 * 109.47337 * 59.99837 * 3 2 1 7 7 C 1.37870 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00690 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00103 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47645 * 179.97438 * 9 7 2 11 11 N 1.46892 * 109.47698 * 179.97438 * 10 9 7 12 12 C 1.46895 * 111.00600 * 176.17615 * 11 10 9 13 13 C 1.52996 * 109.52504 * 294.61415 * 12 11 10 14 14 C 1.50706 * 109.46895 * 302.28912 * 13 12 11 15 15 C 1.38248 * 119.98452 * 266.88614 * 14 13 12 16 16 C 1.38212 * 120.01112 * 179.72426 * 15 14 13 17 17 C 1.38353 * 119.98710 * 0.54572 * 16 15 14 18 18 Cl 1.73597 * 120.01372 * 179.74752 * 17 16 15 19 19 C 1.38350 * 119.97059 * 359.72337 * 17 16 15 20 20 C 1.38212 * 119.98933 * 0.02562 * 19 17 16 21 21 C 1.53181 * 109.52399 * 174.48139 * 12 11 10 22 22 C 1.53174 * 109.03947 * 297.01429 * 21 12 11 23 23 C 1.53095 * 109.16438 * 303.01850 * 22 21 12 24 24 O 1.42905 * 109.41240 * 57.60844 * 23 22 21 25 25 C 1.42911 * 114.15521 * 298.87438 * 24 23 22 26 26 H 0.97002 * 120.00315 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46836 * 59.99672 * 9 7 2 28 28 H 1.09002 * 109.46588 * 300.00324 * 9 7 2 29 29 H 1.09002 * 109.46927 * 59.99583 * 10 9 7 30 30 H 1.09005 * 109.47392 * 300.00425 * 10 9 7 31 31 H 1.00900 * 110.99951 * 300.13474 * 11 10 9 32 32 H 1.09001 * 109.47454 * 182.28802 * 13 12 11 33 33 H 1.09000 * 109.47317 * 62.28119 * 13 12 11 34 34 H 1.08002 * 119.99206 * 359.97438 * 15 14 13 35 35 H 1.08006 * 120.00367 * 180.26555 * 16 15 14 36 36 H 1.08002 * 120.00267 * 179.97438 * 19 17 16 37 37 H 1.08002 * 119.99218 * 180.02562 * 20 19 17 38 38 H 1.09001 * 109.53938 * 56.88416 * 21 12 11 39 39 H 1.09004 * 109.54159 * 177.05518 * 21 12 11 40 40 H 1.09005 * 109.52171 * 62.92285 * 22 21 12 41 41 H 1.08996 * 109.52204 * 183.11471 * 22 21 12 42 42 H 1.09002 * 109.47980 * 177.58546 * 23 22 21 43 43 H 1.08997 * 109.48213 * 297.62999 * 23 22 21 44 44 H 1.08996 * 109.42458 * 301.11061 * 25 24 23 45 45 H 1.08995 * 109.53734 * 181.07770 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 2.4326 -6.0743 -0.0903 13 6 3.1436 -6.0497 -1.4448 14 6 2.1198 -6.0833 -2.5502 15 6 1.7382 -7.2921 -3.1019 16 6 0.7951 -7.3240 -4.1118 17 6 0.2413 -6.1451 -4.5783 18 17 -0.9384 -6.1839 -5.8512 19 6 0.6278 -4.9353 -4.0296 20 6 1.5672 -4.9051 -3.0161 21 6 1.6461 -7.3811 0.0514 22 6 1.0028 -7.4291 1.4407 23 6 2.0944 -7.2898 2.5050 24 8 2.8073 -6.0688 2.2972 25 6 3.4689 -5.9857 1.0332 26 1 -0.4851 0.8400 -0.0004 27 1 0.6247 -2.5570 -0.8896 28 1 0.6240 -2.5566 0.8903 29 1 2.8719 -3.6042 0.8905 30 1 2.8720 -3.6043 -0.8894 31 1 0.9208 -5.0107 0.8160 32 1 3.7970 -6.9182 -1.5281 33 1 3.7372 -5.1392 -1.5270 34 1 2.1741 -8.2120 -2.7409 35 1 0.4939 -8.2688 -4.5398 36 1 0.1962 -4.0147 -4.3936 37 1 1.8686 -3.9607 -2.5874 38 1 0.8691 -7.4236 -0.7119 39 1 2.3216 -8.2281 -0.0686 40 1 0.2901 -6.6104 1.5406 41 1 0.4869 -8.3804 1.5705 42 1 1.6380 -7.2802 3.4948 43 1 2.7841 -8.1305 2.4306 44 1 4.1773 -6.8088 0.9400 45 1 4.0017 -5.0375 0.9622 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595672296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:10 Heat of formation + Delta-G solvation = -58.881490 kcal Electronic energy + Delta-G solvation = -26022.190496 eV Core-core repulsion = 22449.826023 eV Total energy + Delta-G solvation = -3572.364473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.41670 -39.89099 -37.59764 -37.02413 -35.48959 -33.96463 -33.19716 -31.85313 -31.52774 -29.59951 -27.34854 -26.30463 -25.75734 -23.70109 -23.44558 -22.44007 -21.80482 -19.90570 -18.44309 -17.96450 -17.53281 -16.99489 -16.67982 -16.50443 -16.27306 -16.08063 -15.62477 -15.44310 -15.09694 -14.56191 -14.33127 -14.29474 -14.15089 -13.96196 -13.58446 -13.49691 -13.14990 -12.97497 -12.94278 -12.82590 -12.45765 -12.30127 -12.21440 -12.14482 -12.05843 -11.79067 -11.60133 -11.42463 -11.34353 -11.21209 -11.04701 -10.60056 -10.48544 -9.82703 -9.34701 -9.01822 -8.18798 -6.29445 0.31420 0.50108 1.24642 1.39071 1.39276 1.52205 2.40376 2.77760 3.00571 3.15105 3.37297 3.72362 3.86588 3.94432 4.02095 4.07006 4.10190 4.25011 4.34376 4.43356 4.48894 4.52465 4.56542 4.59516 4.73564 4.78371 4.81055 4.82931 4.89350 4.99851 5.02136 5.10349 5.17920 5.22842 5.31325 5.37502 5.39387 5.44877 5.52016 5.73916 5.80332 5.84317 6.02161 6.18343 6.28455 6.44303 6.61247 6.89142 7.39870 8.93373 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007961 B = 0.004950 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3516.272620 B = 5655.644370 C = 8421.888739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.086 3.914 11 N -0.669 5.669 12 C 0.089 3.911 13 C -0.069 4.069 14 C -0.051 4.051 15 C -0.100 4.100 16 C -0.114 4.114 17 C -0.049 4.049 18 Cl -0.083 7.083 19 C -0.129 4.129 20 C -0.090 4.090 21 C -0.104 4.104 22 C -0.157 4.157 23 C 0.054 3.946 24 O -0.407 6.407 25 C 0.032 3.968 26 H 0.262 0.738 27 H -0.006 1.006 28 H -0.021 1.021 29 H 0.014 0.986 30 H 0.063 0.937 31 H 0.333 0.667 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.754 -21.859 -4.053 22.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.077 0.923 9 C 0.002 3.998 10 C -0.043 4.043 11 N -0.301 5.301 12 C -0.003 4.003 13 C -0.106 4.106 14 C -0.051 4.051 15 C -0.118 4.118 16 C -0.133 4.133 17 C -0.076 4.076 18 Cl -0.055 7.055 19 C -0.147 4.147 20 C -0.108 4.108 21 C -0.142 4.142 22 C -0.195 4.195 23 C -0.022 4.022 24 O -0.326 6.326 25 C -0.046 4.046 26 H 0.071 0.929 27 H 0.012 0.988 28 H -0.003 1.003 29 H 0.032 0.968 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.127 0.873 33 H 0.083 0.917 34 H 0.179 0.821 35 H 0.169 0.831 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.069 0.931 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.385 -21.594 -4.708 22.748 hybrid contribution -0.052 1.598 0.664 1.731 sum 5.332 -19.996 -4.044 21.087 Atomic orbital electron populations 1.70120 1.07808 1.27502 1.51804 1.25913 0.95644 1.03159 0.94833 0.85462 0.79213 0.79085 0.77676 1.18457 1.20463 1.20570 1.21632 0.93390 0.92285 1.50268 0.92298 1.18830 0.94189 0.92359 0.94437 1.21774 0.95557 0.88564 0.98383 1.60768 1.22010 1.00913 1.46363 1.21578 0.92552 0.92332 0.93826 1.20687 0.95572 1.03885 0.90472 1.19746 0.97215 0.92585 0.95565 1.21250 0.96953 0.98073 0.95521 1.21211 0.97369 0.96835 0.97869 1.20979 0.96314 0.95565 0.94725 1.98341 1.57481 1.98920 1.50723 1.21066 0.98855 0.96942 0.97878 1.21055 0.95866 0.99203 0.94691 1.21685 1.00056 0.95350 0.97080 1.22218 0.98651 1.03124 0.95477 1.22782 0.93568 0.86480 0.99350 1.87962 1.68711 1.40175 1.35734 1.23333 0.94853 1.02705 0.83695 0.92940 0.98797 1.00260 0.96776 0.91824 0.84782 0.87290 0.91653 0.82136 0.83122 0.86661 0.87250 0.91015 0.88712 0.93057 0.88624 0.88670 0.91193 0.90568 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 13.29 21.44 0.28 -57.60 16 2 C 0.00 0.13 5.46 84.65 0.46 0.60 16 3 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.54 -30.82 9.11 25.60 0.23 -30.59 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 9 C 0.04 2.11 5.27 29.85 0.16 2.26 16 10 C 0.09 3.50 4.08 86.30 0.35 3.86 16 11 N -0.67 -22.37 5.01 -469.76 -2.35 -24.72 16 12 C 0.09 2.11 0.37 3.62 0.00 2.12 16 13 C -0.07 -1.47 4.15 29.85 0.12 -1.35 16 14 C -0.05 -1.24 4.31 -19.86 -0.09 -1.32 16 15 C -0.10 -1.91 8.25 22.27 0.18 -1.73 16 16 C -0.11 -2.39 9.83 22.29 0.22 -2.17 16 17 C -0.05 -1.30 6.32 22.32 0.14 -1.16 16 18 Cl -0.08 -2.07 28.96 -2.72 -0.08 -2.15 16 19 C -0.13 -3.97 9.83 22.29 0.22 -3.76 16 20 C -0.09 -2.82 8.89 22.26 0.20 -2.62 16 21 C -0.10 -1.93 4.45 30.71 0.14 -1.80 16 22 C -0.16 -2.98 5.81 30.68 0.18 -2.80 16 23 C 0.05 1.05 6.85 72.01 0.49 1.55 16 24 O -0.41 -11.21 10.46 -148.98 -1.56 -12.77 16 25 C 0.03 0.78 5.12 72.01 0.37 1.15 16 26 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 27 H -0.01 -0.38 8.14 -2.39 -0.02 -0.39 16 28 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 29 H 0.01 0.60 6.40 -2.39 -0.02 0.58 16 30 H 0.06 2.51 5.12 -2.38 -0.01 2.50 16 31 H 0.33 11.99 6.53 -89.69 -0.59 11.40 16 32 H 0.11 1.55 8.06 -2.39 -0.02 1.53 16 33 H 0.06 1.61 6.53 -2.39 -0.02 1.59 16 34 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.12 3.73 8.06 -2.91 -0.02 3.71 16 37 H 0.11 4.07 6.17 -2.91 -0.02 4.05 16 38 H 0.07 1.50 6.60 -2.39 -0.02 1.48 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 40 H 0.05 1.25 6.62 -2.38 -0.02 1.24 16 41 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 2.22 6.29 -2.39 -0.02 2.21 16 Total: -1.00 -68.03 362.20 2.11 -65.92 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.41 Total: 22.10 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 3.38 Total: -37.76 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -2.07 Total: -82.33 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -1.56 Total: -12.77 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.15 kcal Total: -68.03 2.11 -65.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595672296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.036 kcal (2) G-P(sol) polarization free energy of solvation -68.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds