Wall clock time and date at job start Tue Mar 31 2020 13:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42907 * 110.28715 * 60.95647 * 9 7 2 11 11 C 1.54262 * 110.32773 * 298.82637 * 9 7 2 12 12 C 1.54376 * 105.06058 * 241.10056 * 11 9 7 13 13 N 1.48566 * 104.59503 * 23.85341 * 12 11 9 14 14 C 1.38180 * 111.00239 * 200.95675 * 13 12 11 15 15 N 1.31492 * 120.01461 * 119.85005 * 14 13 12 16 16 C 1.35914 * 121.34150 * 179.79310 * 15 14 13 17 17 C 1.40047 * 119.82279 * 180.27954 * 16 15 14 18 18 C 1.37659 * 119.93563 * 180.17175 * 17 16 15 19 19 C 1.38631 * 120.44373 * 359.97438 * 18 17 16 20 20 C 1.38009 * 120.36287 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.01633 * 359.97438 * 20 19 18 22 22 N 1.39203 * 120.20722 * 180.02562 * 21 20 19 23 23 C 1.35677 * 132.79063 * 359.96607 * 22 21 20 24 24 C 1.35530 * 108.89520 * 179.97438 * 23 22 21 25 25 C 1.39895 * 107.92271 * 0.02562 * 24 23 22 26 26 C 1.37770 * 107.06319 * 359.97438 * 25 24 23 27 27 C 1.48557 * 104.22271 * 320.51560 * 13 12 11 28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 29 29 H 0.96701 * 113.99400 * 300.69960 * 10 9 7 30 30 H 1.09000 * 110.31956 * 359.97438 * 11 9 7 31 31 H 1.08996 * 110.32326 * 122.20880 * 11 9 7 32 32 H 1.09006 * 110.41162 * 142.62930 * 12 11 9 33 33 H 1.08993 * 110.41505 * 265.07634 * 12 11 9 34 34 H 1.07998 * 120.02641 * 0.14704 * 17 16 15 35 35 H 1.08004 * 119.77489 * 180.02562 * 18 17 16 36 36 H 1.07995 * 119.81903 * 179.97438 * 19 18 17 37 37 H 1.08006 * 119.99490 * 180.02562 * 20 19 18 38 38 H 1.07997 * 125.55200 * 359.97003 * 23 22 21 39 39 H 1.07999 * 126.03501 * 179.97438 * 24 23 22 40 40 H 1.08005 * 126.46433 * 179.97438 * 25 24 23 41 41 H 1.08997 * 110.41171 * 280.70763 * 27 13 12 42 42 H 1.08994 * 110.41722 * 158.25775 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.4348 -2.6052 -1.1628 11 6 0.3847 -2.6119 1.2767 12 6 0.9181 -3.8574 2.0165 13 7 2.3138 -4.0119 1.5313 14 6 2.7651 -5.3035 1.7243 15 7 3.1409 -6.0297 0.6945 16 6 3.5931 -7.3015 0.8537 17 6 3.9907 -8.0445 -0.2648 18 6 4.4457 -9.3340 -0.1066 19 6 4.5143 -9.9049 1.1548 20 6 4.1263 -9.1867 2.2676 21 6 3.6649 -7.8852 2.1278 22 7 3.2731 -7.1569 3.2476 23 6 3.2330 -7.4520 4.5713 24 6 2.7638 -6.3750 5.2470 25 6 2.4981 -5.3650 4.3163 26 6 2.8201 -5.8654 3.0737 27 6 2.2353 -3.6860 0.0841 28 1 -0.4850 0.8400 0.0004 29 1 -0.2182 -1.8976 -1.2518 30 1 0.5047 -1.7234 1.8966 31 1 -0.6630 -2.7500 1.0097 32 1 0.9061 -3.6937 3.0941 33 1 0.3265 -4.7355 1.7579 34 1 3.9400 -7.6062 -1.2506 35 1 4.7521 -9.9045 -0.9710 36 1 4.8724 -10.9176 1.2672 37 1 4.1826 -9.6372 3.2476 38 1 3.5270 -8.3921 5.0142 39 1 2.6197 -6.3086 6.3153 40 1 2.1131 -4.3790 4.5313 41 1 1.8497 -4.5373 -0.4769 42 1 3.2149 -3.3931 -0.2934 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596286107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:23 Heat of formation + Delta-G solvation = 72.827991 kcal Electronic energy + Delta-G solvation = -27130.286316 eV Core-core repulsion = 23462.525701 eV Total energy + Delta-G solvation = -3667.760615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.25464 -39.15398 -38.93174 -36.24334 -34.52894 -33.11171 -32.12914 -30.88332 -29.53921 -29.11811 -28.23159 -27.70769 -24.96568 -23.45152 -23.15144 -22.18517 -20.95387 -20.26144 -19.62268 -18.57563 -18.31414 -17.09118 -16.25722 -15.69560 -15.58867 -15.23844 -14.99950 -14.86624 -14.54795 -14.24843 -13.88318 -13.59995 -13.43540 -12.97921 -12.86966 -12.51194 -12.46379 -12.24947 -11.96182 -11.73821 -11.64824 -11.53872 -11.25127 -11.05427 -10.74756 -10.52490 -10.39829 -10.11424 -10.02787 -9.56128 -9.30188 -9.07404 -8.59976 -8.45012 -8.26324 -8.18289 -7.39838 -6.19748 -4.25884 0.50747 0.79010 1.86697 2.54020 2.58563 3.05647 3.24377 3.33254 3.39007 3.74167 3.97582 4.27213 4.34478 4.45867 4.64207 4.81223 4.89904 4.95820 5.09739 5.19960 5.29963 5.37713 5.43247 5.56579 5.69645 5.81325 5.84115 5.93139 6.03182 6.05580 6.08352 6.15499 6.27981 6.31342 6.52942 6.58706 6.71490 6.77739 6.80224 6.83132 7.02257 7.21556 7.34959 7.48065 7.57277 7.81486 8.10881 8.15851 8.77558 9.39049 9.48653 10.87586 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.003715 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.953961 B = 7535.274683 C = 8399.584426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.064 0.936 9 C 0.247 3.753 10 O -0.590 6.590 11 C -0.123 4.123 12 C 0.046 3.954 13 N -0.433 5.433 14 C 0.418 3.582 15 N -0.541 5.541 16 C 0.131 3.869 17 C -0.084 4.084 18 C -0.112 4.112 19 C -0.117 4.117 20 C -0.118 4.118 21 C 0.062 3.938 22 N -0.358 5.358 23 C -0.007 4.007 24 C -0.179 4.179 25 C -0.130 4.130 26 C -0.022 4.022 27 C 0.068 3.932 28 H 0.266 0.734 29 H 0.384 0.616 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.168 0.832 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.064 0.936 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.752 -16.860 7.284 18.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.082 0.918 9 C 0.207 3.793 10 O -0.399 6.399 11 C -0.161 4.161 12 C -0.079 4.079 13 N -0.150 5.150 14 C 0.156 3.844 15 N -0.259 5.259 16 C 0.019 3.981 17 C -0.104 4.104 18 C -0.131 4.131 19 C -0.136 4.136 20 C -0.138 4.138 21 C -0.036 4.036 22 N -0.025 5.025 23 C -0.139 4.139 24 C -0.202 4.202 25 C -0.158 4.158 26 C -0.132 4.132 27 C -0.058 4.058 28 H 0.076 0.924 29 H 0.235 0.765 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.185 0.815 39 H 0.168 0.832 40 H 0.172 0.828 41 H 0.082 0.918 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.452 -16.946 6.367 18.906 hybrid contribution -0.131 0.629 0.814 1.038 sum 5.321 -16.317 7.182 18.604 Atomic orbital electron populations 1.69692 1.05877 1.27341 1.51045 1.24996 0.94994 0.99438 0.93985 0.86410 0.80261 0.83021 0.77566 1.19653 1.20946 1.20926 1.21687 0.93691 0.90217 1.50389 0.91791 1.19299 0.86445 0.91537 0.82055 1.86099 1.53170 1.54339 1.46313 1.22969 0.98949 0.94864 0.99359 1.23333 0.84009 0.99847 1.00718 1.61678 1.21640 1.13069 1.18634 1.21058 0.89826 0.88067 0.85458 1.69036 1.21717 1.04969 1.30224 1.18472 0.98426 0.90964 0.90265 1.20963 0.98132 0.93565 0.97767 1.21078 0.99556 0.94913 0.97568 1.20947 1.00835 0.99949 0.91884 1.20625 1.01229 0.91970 0.99941 1.18598 1.05220 0.93605 0.86198 1.41546 1.44300 1.11250 1.05413 1.21749 1.10025 1.01879 0.80204 1.20930 1.06538 0.93116 0.99612 1.21202 1.04806 1.00372 0.89382 1.20089 1.11626 0.86266 0.95220 1.22986 1.01431 0.98280 0.83093 0.92409 0.76547 0.89871 0.92008 0.89976 0.93721 0.84132 0.85054 0.85227 0.85520 0.81452 0.83177 0.82842 0.91819 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.46 10.80 55.43 0.60 -22.86 16 2 C 0.07 1.76 5.01 -17.82 -0.09 1.67 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -13.87 8.10 -34.44 -0.28 -14.15 16 8 H 0.06 1.74 7.54 -52.49 -0.40 1.34 16 9 C 0.25 6.07 1.06 -90.38 -0.10 5.97 16 10 O -0.59 -15.18 12.95 -35.23 -0.46 -15.64 16 11 C -0.12 -2.73 5.55 -25.35 -0.14 -2.87 16 12 C 0.05 0.88 5.76 -2.18 -0.01 0.87 16 13 N -0.43 -8.90 5.41 -166.83 -0.90 -9.81 16 14 C 0.42 8.12 6.39 -153.69 -0.98 7.14 16 15 N -0.54 -10.52 8.52 -8.74 -0.07 -10.59 16 16 C 0.13 2.19 6.58 -84.60 -0.56 1.64 16 17 C -0.08 -1.16 9.98 -39.12 -0.39 -1.55 16 18 C -0.11 -1.17 10.01 -39.65 -0.40 -1.57 16 19 C -0.12 -1.15 10.03 -39.52 -0.40 -1.55 16 20 C -0.12 -1.36 9.61 -39.46 -0.38 -1.74 16 21 C 0.06 0.94 6.62 -83.52 -0.55 0.39 16 22 N -0.36 -5.51 3.01 -57.05 -0.17 -5.68 16 23 C -0.01 -0.08 11.09 -16.82 -0.19 -0.27 16 24 C -0.18 -2.16 10.81 -39.93 -0.43 -2.59 16 25 C -0.13 -1.92 10.12 -39.13 -0.40 -2.31 16 26 C -0.02 -0.37 6.55 -82.05 -0.54 -0.91 16 27 C 0.07 1.54 5.14 -2.18 -0.01 1.53 16 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.38 9.90 7.31 45.56 0.33 10.23 16 30 H 0.08 1.99 7.22 -51.93 -0.38 1.61 16 31 H 0.06 1.37 7.98 -51.93 -0.41 0.96 16 32 H 0.08 1.37 6.41 -51.93 -0.33 1.04 16 33 H 0.04 0.83 7.97 -51.93 -0.41 0.42 16 34 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.13 1.14 7.41 -52.48 -0.39 0.75 16 38 H 0.17 1.41 7.67 -52.49 -0.40 1.01 16 39 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.15 2.10 6.87 -52.48 -0.36 1.74 16 41 H 0.06 1.47 7.19 -51.93 -0.37 1.10 16 42 H 0.09 2.00 7.67 -51.93 -0.40 1.61 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -29.64 341.74 -11.06 -40.70 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -4.35 Total: 13.39 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -5.84 Total: -10.31 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.55 Total: -48.93 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.46 Total: -15.64 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.64 -11.06 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596286107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.531 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds