Wall clock time and date at job start Tue Mar 31 2020 13:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42907 * 110.28715 * 60.95647 * 9 7 2 11 11 C 1.54262 * 110.32773 * 298.82637 * 9 7 2 12 12 C 1.54376 * 105.06058 * 241.10056 * 11 9 7 13 13 N 1.48566 * 104.59503 * 23.85341 * 12 11 9 14 14 C 1.38180 * 111.00239 * 200.95675 * 13 12 11 15 15 N 1.31492 * 120.01461 * 119.85005 * 14 13 12 16 16 C 1.35914 * 121.34150 * 179.79310 * 15 14 13 17 17 C 1.40047 * 119.82279 * 180.27954 * 16 15 14 18 18 C 1.37659 * 119.93563 * 180.17175 * 17 16 15 19 19 C 1.38631 * 120.44373 * 359.97438 * 18 17 16 20 20 C 1.38009 * 120.36287 * 0.02562 * 19 18 17 21 21 C 1.38801 * 120.01633 * 359.97438 * 20 19 18 22 22 N 1.39203 * 120.20722 * 180.02562 * 21 20 19 23 23 C 1.35677 * 132.79063 * 359.96607 * 22 21 20 24 24 C 1.35530 * 108.89520 * 179.97438 * 23 22 21 25 25 C 1.39895 * 107.92271 * 0.02562 * 24 23 22 26 26 C 1.37770 * 107.06319 * 359.97438 * 25 24 23 27 27 C 1.48557 * 104.22271 * 320.51560 * 13 12 11 28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 29 29 H 0.96701 * 113.99400 * 300.69960 * 10 9 7 30 30 H 1.09000 * 110.31956 * 359.97438 * 11 9 7 31 31 H 1.08996 * 110.32326 * 122.20880 * 11 9 7 32 32 H 1.09006 * 110.41162 * 142.62930 * 12 11 9 33 33 H 1.08993 * 110.41505 * 265.07634 * 12 11 9 34 34 H 1.07998 * 120.02641 * 0.14704 * 17 16 15 35 35 H 1.08004 * 119.77489 * 180.02562 * 18 17 16 36 36 H 1.07995 * 119.81903 * 179.97438 * 19 18 17 37 37 H 1.08006 * 119.99490 * 180.02562 * 20 19 18 38 38 H 1.07997 * 125.55200 * 359.97003 * 23 22 21 39 39 H 1.07999 * 126.03501 * 179.97438 * 24 23 22 40 40 H 1.08005 * 126.46433 * 179.97438 * 25 24 23 41 41 H 1.08997 * 110.41171 * 280.70763 * 27 13 12 42 42 H 1.08994 * 110.41722 * 158.25775 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.4348 -2.6052 -1.1628 11 6 0.3847 -2.6119 1.2767 12 6 0.9181 -3.8574 2.0165 13 7 2.3138 -4.0119 1.5313 14 6 2.7651 -5.3035 1.7243 15 7 3.1409 -6.0297 0.6945 16 6 3.5931 -7.3015 0.8537 17 6 3.9907 -8.0445 -0.2648 18 6 4.4457 -9.3340 -0.1066 19 6 4.5143 -9.9049 1.1548 20 6 4.1263 -9.1867 2.2676 21 6 3.6649 -7.8852 2.1278 22 7 3.2731 -7.1569 3.2476 23 6 3.2330 -7.4520 4.5713 24 6 2.7638 -6.3750 5.2470 25 6 2.4981 -5.3650 4.3163 26 6 2.8201 -5.8654 3.0737 27 6 2.2353 -3.6860 0.0841 28 1 -0.4850 0.8400 0.0004 29 1 -0.2182 -1.8976 -1.2518 30 1 0.5047 -1.7234 1.8966 31 1 -0.6630 -2.7500 1.0097 32 1 0.9061 -3.6937 3.0941 33 1 0.3265 -4.7355 1.7579 34 1 3.9400 -7.6062 -1.2506 35 1 4.7521 -9.9045 -0.9710 36 1 4.8724 -10.9176 1.2672 37 1 4.1826 -9.6372 3.2476 38 1 3.5270 -8.3921 5.0142 39 1 2.6197 -6.3086 6.3153 40 1 2.1131 -4.3790 4.5313 41 1 1.8497 -4.5373 -0.4769 42 1 3.2149 -3.3931 -0.2934 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596286107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:22 Heat of formation + Delta-G solvation = 54.287716 kcal Electronic energy + Delta-G solvation = -27131.090283 eV Core-core repulsion = 23462.525701 eV Total energy + Delta-G solvation = -3668.564582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.32083 -40.69324 -39.98010 -37.80029 -36.02780 -34.20302 -34.16100 -32.24951 -30.64629 -30.44406 -29.69920 -29.09002 -26.83076 -24.67648 -24.22817 -23.31831 -22.47621 -21.58952 -20.99375 -19.74299 -19.53808 -19.09280 -17.60513 -16.97671 -16.81397 -16.66200 -16.32320 -16.19326 -15.88660 -15.72439 -15.27324 -14.99206 -14.61707 -14.28365 -14.19093 -13.99056 -13.81915 -13.55725 -13.29799 -13.28291 -13.14145 -12.78629 -12.73553 -12.57232 -12.45046 -12.34756 -12.21748 -11.99520 -11.10026 -11.07356 -10.75110 -10.64877 -10.52389 -10.19078 -9.66776 -9.29107 -8.56113 -8.21036 -6.34492 -0.60847 -0.18492 0.78859 1.40182 1.43784 1.52476 1.54885 1.63068 1.99458 2.40241 2.42200 2.87368 3.03614 3.17393 3.39651 3.54144 3.80459 3.90466 3.97197 4.09099 4.11707 4.16154 4.23400 4.30541 4.36674 4.44225 4.52105 4.57462 4.71062 4.88155 4.92679 4.93951 5.05267 5.12995 5.15636 5.17854 5.24407 5.37839 5.51172 5.60567 5.62985 5.70361 5.76471 5.79738 6.03927 6.16775 6.27565 6.69010 6.84876 7.33504 7.42477 8.85195 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.003715 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.953961 B = 7535.274683 C = 8399.584426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.033 3.967 3 Si 0.958 3.042 4 H -0.278 1.278 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.047 0.953 9 C 0.234 3.766 10 O -0.600 6.600 11 C -0.111 4.111 12 C 0.058 3.942 13 N -0.441 5.441 14 C 0.390 3.610 15 N -0.568 5.568 16 C 0.079 3.921 17 C -0.102 4.102 18 C -0.102 4.102 19 C -0.096 4.096 20 C -0.118 4.118 21 C 0.046 3.954 22 N -0.366 5.366 23 C 0.006 3.994 24 C -0.176 4.176 25 C -0.135 4.135 26 C -0.062 4.062 27 C 0.084 3.916 28 H 0.270 0.730 29 H 0.380 0.620 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.108 0.892 33 H 0.044 0.956 34 H 0.132 0.868 35 H 0.167 0.833 36 H 0.176 0.824 37 H 0.161 0.839 38 H 0.212 0.788 39 H 0.186 0.814 40 H 0.156 0.844 41 H 0.049 0.951 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.891 -19.922 9.601 22.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.168 4.168 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.065 0.935 9 C 0.194 3.806 10 O -0.408 6.408 11 C -0.150 4.150 12 C -0.067 4.067 13 N -0.159 5.159 14 C 0.128 3.872 15 N -0.286 5.286 16 C -0.031 4.031 17 C -0.122 4.122 18 C -0.120 4.120 19 C -0.115 4.115 20 C -0.138 4.138 21 C -0.052 4.052 22 N -0.034 5.034 23 C -0.126 4.126 24 C -0.198 4.198 25 C -0.163 4.163 26 C -0.172 4.172 27 C -0.043 4.043 28 H 0.080 0.920 29 H 0.230 0.770 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.126 0.874 33 H 0.063 0.937 34 H 0.150 0.850 35 H 0.185 0.815 36 H 0.194 0.806 37 H 0.178 0.822 38 H 0.229 0.771 39 H 0.204 0.796 40 H 0.173 0.827 41 H 0.068 0.932 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.600 -20.047 8.679 22.820 hybrid contribution -0.409 1.340 0.076 1.403 sum 6.191 -18.707 8.756 21.562 Atomic orbital electron populations 1.69754 1.06536 1.28180 1.50492 1.25597 0.95843 1.01907 0.93410 0.85512 0.78692 0.79531 0.77873 1.20254 1.20387 1.19973 1.21788 0.93109 0.91715 1.51852 0.93471 1.19488 0.86972 0.91657 0.82478 1.86092 1.53242 1.54152 1.47348 1.22704 0.98332 0.95665 0.98254 1.23220 0.83738 0.98073 1.01648 1.61735 1.22307 1.15259 1.16579 1.21076 0.91220 0.87839 0.87071 1.68860 1.21604 1.06734 1.31440 1.18865 1.01281 0.90556 0.92434 1.21155 0.99094 0.95115 0.96845 1.21524 0.97509 0.93404 0.99602 1.21546 0.97861 1.01394 0.90677 1.21093 1.00093 0.90351 1.02249 1.18911 1.05635 0.95004 0.85609 1.41779 1.44512 1.10642 1.06506 1.22604 1.07761 1.03383 0.78818 1.21375 1.05546 0.91965 1.00917 1.21468 1.04335 1.01189 0.89347 1.20026 1.14583 0.87880 0.94662 1.22606 0.99546 0.96926 0.85178 0.92005 0.76970 0.91669 0.92476 0.87405 0.93724 0.84960 0.81506 0.80639 0.82190 0.77114 0.79643 0.82674 0.93233 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.46 10.80 21.45 0.23 -48.23 16 2 C 0.03 1.76 5.01 84.65 0.42 2.18 16 3 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.55 -30.51 8.10 25.60 0.21 -30.31 16 8 H 0.05 2.72 7.54 -2.91 -0.02 2.70 16 9 C 0.23 12.19 1.06 -10.64 -0.01 12.18 16 10 O -0.60 -32.60 12.95 -148.98 -1.93 -34.53 16 11 C -0.11 -5.18 5.55 31.49 0.17 -5.00 16 12 C 0.06 2.33 5.76 86.45 0.50 2.83 16 13 N -0.44 -19.32 5.41 -681.72 -3.69 -23.00 16 14 C 0.39 16.07 6.39 135.49 0.87 16.93 16 15 N -0.57 -23.71 8.52 -181.56 -1.55 -25.25 16 16 C 0.08 2.74 6.58 39.46 0.26 3.00 16 17 C -0.10 -2.82 9.98 22.57 0.23 -2.60 16 18 C -0.10 -1.82 10.01 22.23 0.22 -1.60 16 19 C -0.10 -1.42 10.03 22.31 0.22 -1.20 16 20 C -0.12 -2.27 9.61 22.35 0.21 -2.06 16 21 C 0.05 1.34 6.62 38.61 0.26 1.60 16 22 N -0.37 -10.77 3.01 -334.39 -1.01 -11.78 16 23 C 0.01 0.13 11.09 83.47 0.93 1.05 16 24 C -0.18 -3.69 10.81 22.04 0.24 -3.45 16 25 C -0.14 -3.88 10.12 22.56 0.23 -3.65 16 26 C -0.06 -2.15 6.55 40.16 0.26 -1.89 16 27 C 0.08 4.14 5.14 86.45 0.44 4.58 16 28 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 29 H 0.38 20.61 7.31 -74.06 -0.54 20.07 16 30 H 0.06 3.24 7.22 -2.39 -0.02 3.23 16 31 H 0.06 2.66 7.98 -2.39 -0.02 2.64 16 32 H 0.11 3.69 6.41 -2.38 -0.02 3.67 16 33 H 0.04 1.75 7.97 -2.39 -0.02 1.73 16 34 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 35 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 36 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 37 H 0.16 1.94 7.41 -2.91 -0.02 1.92 16 38 H 0.21 2.31 7.67 -2.91 -0.02 2.29 16 39 H 0.19 2.47 8.06 -2.91 -0.02 2.44 16 40 H 0.16 4.21 6.87 -2.91 -0.02 4.19 16 41 H 0.05 2.50 7.19 -2.39 -0.02 2.49 16 42 H 0.06 3.32 7.67 -2.39 -0.02 3.30 16 Total: -1.00 -70.05 341.74 0.27 -69.78 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 0.52 Total: 35.23 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 5.66 Total: -7.41 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -6.01 Total: -108.27 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -1.93 Total: -34.53 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -70.05 0.27 -69.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596286107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.067 kcal (2) G-P(sol) polarization free energy of solvation -70.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds