Wall clock time and date at job start Tue Mar 31 2020 13:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99954 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99974 * 3 2 1 5 5 H 1.48502 * 109.47512 * 30.00272 * 3 2 1 6 6 H 1.48504 * 109.47338 * 150.00255 * 3 2 1 7 7 C 1.37871 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00371 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00099 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.27339 * 300.70215 * 9 7 2 11 11 C 1.54595 * 110.31013 * 62.79257 * 9 7 2 12 12 C 1.55103 * 102.84457 * 97.11641 * 11 9 7 13 13 N 1.48533 * 103.28515 * 37.30647 * 12 11 9 14 14 C 1.38178 * 111.00325 * 200.33152 * 13 12 11 15 15 N 1.31494 * 120.01616 * 117.12081 * 14 13 12 16 16 C 1.35914 * 121.34204 * 179.79326 * 15 14 13 17 17 C 1.40042 * 119.82005 * 180.28147 * 16 15 14 18 18 C 1.37662 * 119.93648 * 180.16935 * 17 16 15 19 19 C 1.38633 * 120.43739 * 0.02562 * 18 17 16 20 20 C 1.38006 * 120.37023 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.01276 * 359.97438 * 20 19 18 22 22 N 1.39195 * 120.21038 * 180.02562 * 21 20 19 23 23 C 1.35674 * 132.78839 * 359.97438 * 22 21 20 24 24 C 1.35536 * 108.89809 * 179.97438 * 23 22 21 25 25 C 1.39896 * 107.91981 * 0.02562 * 24 23 22 26 26 C 1.37765 * 107.06649 * 0.02562 * 25 24 23 27 27 C 1.47906 * 105.81926 * 320.84887 * 13 12 11 28 28 H 0.96998 * 119.99549 * 359.97438 * 1 2 3 29 29 H 0.96697 * 113.99904 * 59.30212 * 10 9 7 30 30 H 1.09003 * 110.72570 * 215.41889 * 11 9 7 31 31 H 1.08998 * 110.72145 * 338.70162 * 11 9 7 32 32 H 1.09003 * 110.59641 * 278.87601 * 12 11 9 33 33 H 1.09001 * 110.82763 * 155.85344 * 12 11 9 34 34 H 1.08002 * 120.02832 * 0.14788 * 17 16 15 35 35 H 1.08002 * 119.78023 * 180.02562 * 18 17 16 36 36 H 1.08001 * 119.81098 * 179.97438 * 19 18 17 37 37 H 1.07995 * 119.99599 * 179.97438 * 20 19 18 38 38 H 1.07993 * 125.55501 * 359.95557 * 23 22 21 39 39 H 1.07997 * 126.03810 * 180.02562 * 24 23 22 40 40 H 1.07998 * 126.46232 * 180.02562 * 25 24 23 41 41 H 1.08995 * 109.91186 * 265.97332 * 27 13 12 42 42 H 1.09005 * 109.91324 * 144.68234 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 0.4111 -2.5860 1.1524 11 6 0.4081 -2.6321 -1.2897 12 6 1.3135 -3.4959 -2.2060 13 7 1.9371 -4.4575 -1.2612 14 6 3.0900 -5.0002 -1.7958 15 7 4.2490 -4.7877 -1.2122 16 6 5.3990 -5.3118 -1.7124 17 6 6.6153 -5.0701 -1.0618 18 6 7.7819 -5.5969 -1.5683 19 6 7.7626 -6.3666 -2.7211 20 6 6.5726 -6.6144 -3.3747 21 6 5.3861 -6.0926 -2.8783 22 7 4.1835 -6.3405 -3.5340 23 6 3.8714 -7.0406 -4.6534 24 6 2.5337 -6.9662 -4.8589 25 6 1.9830 -6.1911 -3.8328 26 6 3.0222 -5.8066 -3.0143 27 6 2.2341 -3.6839 -0.0360 28 1 -0.4849 0.8401 0.0004 29 1 -0.2433 -1.8770 1.2166 30 1 -0.5325 -3.1434 -1.0845 31 1 0.2275 -1.6538 -1.7349 32 1 2.0740 -2.8792 -2.6850 33 1 0.7194 -4.0215 -2.9536 34 1 6.6379 -4.4707 -0.1636 35 1 8.7185 -5.4092 -1.0642 36 1 8.6839 -6.7745 -3.1099 37 1 6.5646 -7.2145 -4.2726 38 1 4.5742 -7.5706 -5.2790 39 1 1.9893 -7.4244 -5.6713 40 1 0.9399 -5.9413 -3.7063 41 1 3.2592 -3.3150 -0.0693 42 1 2.0909 -4.3118 0.8434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596286116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:27 Heat of formation + Delta-G solvation = 73.618897 kcal Electronic energy + Delta-G solvation = -27256.892750 eV Core-core repulsion = 23589.166431 eV Total energy + Delta-G solvation = -3667.726319 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23527 -39.14817 -38.89565 -36.21031 -34.48583 -33.09127 -32.16212 -30.85299 -29.52392 -29.07698 -28.24042 -27.62139 -25.01990 -23.42226 -23.12979 -22.17292 -20.92841 -20.24109 -19.59302 -18.56340 -18.38242 -17.04635 -16.18838 -15.66935 -15.53461 -15.24304 -15.07946 -14.96920 -14.51000 -14.25184 -13.63826 -13.54342 -13.46091 -12.96525 -12.86097 -12.57376 -12.49596 -12.31226 -11.96340 -11.70095 -11.51955 -11.29675 -11.24621 -11.09823 -10.72473 -10.53923 -10.45547 -10.17359 -10.06328 -9.48521 -9.22880 -9.18925 -8.63581 -8.40061 -8.24089 -8.12191 -7.37322 -6.24491 -4.33522 0.53283 0.81492 1.89146 2.55749 2.60614 3.07473 3.20704 3.28445 3.33100 3.78501 4.00974 4.28494 4.31205 4.48696 4.67042 4.83340 4.92358 4.98691 5.03768 5.22526 5.31264 5.39870 5.46120 5.62707 5.78303 5.80848 5.85859 5.97170 6.05555 6.06930 6.14417 6.18833 6.30864 6.46879 6.55142 6.61137 6.71713 6.82068 6.85038 6.97976 7.08689 7.23521 7.30060 7.48853 7.54954 7.77203 8.07535 8.19776 8.70536 9.35344 9.50880 10.81507 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.004221 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.204354 B = 6631.356540 C = 7757.775824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.246 3.754 10 O -0.587 6.587 11 C -0.130 4.130 12 C 0.054 3.946 13 N -0.451 5.451 14 C 0.421 3.579 15 N -0.538 5.538 16 C 0.130 3.870 17 C -0.083 4.083 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.118 4.118 21 C 0.062 3.938 22 N -0.357 5.357 23 C -0.007 4.007 24 C -0.179 4.179 25 C -0.131 4.131 26 C -0.019 4.019 27 C 0.054 3.946 28 H 0.268 0.732 29 H 0.383 0.617 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.168 0.832 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.089 0.911 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.362 -12.122 -9.328 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.080 0.920 9 C 0.206 3.794 10 O -0.396 6.396 11 C -0.168 4.168 12 C -0.071 4.071 13 N -0.169 5.169 14 C 0.159 3.841 15 N -0.256 5.256 16 C 0.018 3.982 17 C -0.103 4.103 18 C -0.131 4.131 19 C -0.136 4.136 20 C -0.138 4.138 21 C -0.036 4.036 22 N -0.025 5.025 23 C -0.139 4.139 24 C -0.202 4.202 25 C -0.159 4.159 26 C -0.130 4.130 27 C -0.072 4.072 28 H 0.078 0.922 29 H 0.234 0.766 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.185 0.815 39 H 0.168 0.832 40 H 0.170 0.830 41 H 0.107 0.893 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.748 -12.463 -8.252 17.845 hybrid contribution 0.543 1.287 -1.101 1.778 sum 10.291 -11.177 -9.352 17.841 Atomic orbital electron populations 1.69650 1.05868 1.27564 1.50483 1.24995 0.94999 0.99420 0.93778 0.86476 0.79996 0.82692 0.78192 1.20586 1.20970 1.19719 1.21739 0.93587 0.90510 1.51185 0.91984 1.19369 0.86483 0.90986 0.82571 1.86123 1.51976 1.54667 1.46876 1.23170 0.96807 0.99035 0.97823 1.23349 0.97632 0.91652 0.94479 1.61296 1.16990 1.31214 1.07376 1.20946 0.88962 0.89058 0.85164 1.69002 0.96216 1.25661 1.34683 1.18479 0.93518 0.95100 0.91068 1.20980 0.89488 0.99795 1.00041 1.21081 0.98113 0.97625 0.96315 1.20948 0.97101 0.99521 0.95995 1.20617 0.90780 1.01521 1.00900 1.18594 0.85174 1.03680 0.96109 1.41550 1.05297 1.36117 1.19505 1.21743 0.97443 1.03651 0.91070 1.20921 0.92784 1.04886 1.01637 1.21149 0.98094 1.01628 0.94985 1.20087 0.86767 1.06891 0.99231 1.23007 1.00945 0.94377 0.88869 0.92193 0.76644 0.92560 0.88943 0.92709 0.90350 0.84088 0.85053 0.85235 0.85530 0.81471 0.83214 0.82973 0.89292 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.27 10.38 55.43 0.58 -22.70 16 2 C 0.07 1.82 5.01 -17.82 -0.09 1.73 16 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.12 8.23 -34.44 -0.28 -14.40 16 8 H 0.06 1.68 7.35 -52.48 -0.39 1.30 16 9 C 0.25 6.09 0.99 -90.41 -0.09 6.00 16 10 O -0.59 -15.30 12.93 -35.23 -0.46 -15.76 16 11 C -0.13 -2.91 5.89 -24.78 -0.15 -3.05 16 12 C 0.05 1.05 5.92 -1.81 -0.01 1.04 16 13 N -0.45 -9.22 5.30 -167.17 -0.89 -10.11 16 14 C 0.42 8.26 6.37 -153.69 -0.98 7.28 16 15 N -0.54 -10.68 8.18 -8.74 -0.07 -10.75 16 16 C 0.13 2.24 6.58 -84.60 -0.56 1.68 16 17 C -0.08 -1.18 9.98 -39.12 -0.39 -1.57 16 18 C -0.11 -1.22 10.01 -39.65 -0.40 -1.62 16 19 C -0.12 -1.18 10.03 -39.52 -0.40 -1.58 16 20 C -0.12 -1.40 9.61 -39.46 -0.38 -1.78 16 21 C 0.06 0.97 6.62 -83.52 -0.55 0.41 16 22 N -0.36 -5.56 3.01 -57.05 -0.17 -5.74 16 23 C -0.01 -0.09 11.09 -16.82 -0.19 -0.27 16 24 C -0.18 -2.16 10.81 -39.93 -0.43 -2.59 16 25 C -0.13 -1.92 10.19 -39.13 -0.40 -2.32 16 26 C -0.02 -0.33 6.57 -82.05 -0.54 -0.87 16 27 C 0.05 1.23 5.83 -2.75 -0.02 1.21 16 28 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.38 9.99 7.19 45.56 0.33 10.32 16 30 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 31 H 0.09 2.23 6.64 -51.93 -0.34 1.89 16 32 H 0.05 1.12 7.99 -51.93 -0.42 0.71 16 33 H 0.08 1.31 6.64 -51.93 -0.35 0.96 16 34 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.13 1.17 7.41 -52.49 -0.39 0.78 16 38 H 0.17 1.43 7.67 -52.49 -0.40 1.03 16 39 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.15 2.04 7.09 -52.49 -0.37 1.66 16 41 H 0.09 2.11 5.75 -51.93 -0.30 1.81 16 42 H 0.08 1.77 7.96 -51.93 -0.41 1.36 16 LS Contribution 340.69 15.07 5.13 5.13 Total: -1.00 -29.49 340.69 -11.02 -40.52 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -4.28 Total: 14.60 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -5.84 Total: -10.71 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.55 Total: -49.29 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.46 Total: -15.76 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.49 -11.02 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596286116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.135 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds