Wall clock time and date at job start Tue Mar 31 2020 13:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99954 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99974 * 3 2 1 5 5 H 1.48502 * 109.47512 * 30.00272 * 3 2 1 6 6 H 1.48504 * 109.47338 * 150.00255 * 3 2 1 7 7 C 1.37871 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00371 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00099 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.27339 * 300.70215 * 9 7 2 11 11 C 1.54595 * 110.31013 * 62.79257 * 9 7 2 12 12 C 1.55103 * 102.84457 * 97.11641 * 11 9 7 13 13 N 1.48533 * 103.28515 * 37.30647 * 12 11 9 14 14 C 1.38178 * 111.00325 * 200.33152 * 13 12 11 15 15 N 1.31494 * 120.01616 * 117.12081 * 14 13 12 16 16 C 1.35914 * 121.34204 * 179.79326 * 15 14 13 17 17 C 1.40042 * 119.82005 * 180.28147 * 16 15 14 18 18 C 1.37662 * 119.93648 * 180.16935 * 17 16 15 19 19 C 1.38633 * 120.43739 * 0.02562 * 18 17 16 20 20 C 1.38006 * 120.37023 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.01276 * 359.97438 * 20 19 18 22 22 N 1.39195 * 120.21038 * 180.02562 * 21 20 19 23 23 C 1.35674 * 132.78839 * 359.97438 * 22 21 20 24 24 C 1.35536 * 108.89809 * 179.97438 * 23 22 21 25 25 C 1.39896 * 107.91981 * 0.02562 * 24 23 22 26 26 C 1.37765 * 107.06649 * 0.02562 * 25 24 23 27 27 C 1.47906 * 105.81926 * 320.84887 * 13 12 11 28 28 H 0.96998 * 119.99549 * 359.97438 * 1 2 3 29 29 H 0.96697 * 113.99904 * 59.30212 * 10 9 7 30 30 H 1.09003 * 110.72570 * 215.41889 * 11 9 7 31 31 H 1.08998 * 110.72145 * 338.70162 * 11 9 7 32 32 H 1.09003 * 110.59641 * 278.87601 * 12 11 9 33 33 H 1.09001 * 110.82763 * 155.85344 * 12 11 9 34 34 H 1.08002 * 120.02832 * 0.14788 * 17 16 15 35 35 H 1.08002 * 119.78023 * 180.02562 * 18 17 16 36 36 H 1.08001 * 119.81098 * 179.97438 * 19 18 17 37 37 H 1.07995 * 119.99599 * 179.97438 * 20 19 18 38 38 H 1.07993 * 125.55501 * 359.95557 * 23 22 21 39 39 H 1.07997 * 126.03810 * 180.02562 * 24 23 22 40 40 H 1.07998 * 126.46232 * 180.02562 * 25 24 23 41 41 H 1.08995 * 109.91186 * 265.97332 * 27 13 12 42 42 H 1.09005 * 109.91324 * 144.68234 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 0.4111 -2.5860 1.1524 11 6 0.4081 -2.6321 -1.2897 12 6 1.3135 -3.4959 -2.2060 13 7 1.9371 -4.4575 -1.2612 14 6 3.0900 -5.0002 -1.7958 15 7 4.2490 -4.7877 -1.2122 16 6 5.3990 -5.3118 -1.7124 17 6 6.6153 -5.0701 -1.0618 18 6 7.7819 -5.5969 -1.5683 19 6 7.7626 -6.3666 -2.7211 20 6 6.5726 -6.6144 -3.3747 21 6 5.3861 -6.0926 -2.8783 22 7 4.1835 -6.3405 -3.5340 23 6 3.8714 -7.0406 -4.6534 24 6 2.5337 -6.9662 -4.8589 25 6 1.9830 -6.1911 -3.8328 26 6 3.0222 -5.8066 -3.0143 27 6 2.2341 -3.6839 -0.0360 28 1 -0.4849 0.8401 0.0004 29 1 -0.2433 -1.8770 1.2166 30 1 -0.5325 -3.1434 -1.0845 31 1 0.2275 -1.6538 -1.7349 32 1 2.0740 -2.8792 -2.6850 33 1 0.7194 -4.0215 -2.9536 34 1 6.6379 -4.4707 -0.1636 35 1 8.7185 -5.4092 -1.0642 36 1 8.6839 -6.7745 -3.1099 37 1 6.5646 -7.2145 -4.2726 38 1 4.5742 -7.5706 -5.2790 39 1 1.9893 -7.4244 -5.6713 40 1 0.9399 -5.9413 -3.7063 41 1 3.2592 -3.3150 -0.0693 42 1 2.0909 -4.3118 0.8434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596286116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:26 Heat of formation + Delta-G solvation = 55.341527 kcal Electronic energy + Delta-G solvation = -27257.685316 eV Core-core repulsion = 23589.166431 eV Total energy + Delta-G solvation = -3668.518885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.31374 -40.69434 -39.97540 -37.78707 -36.00202 -34.22599 -34.17232 -32.24133 -30.63799 -30.42224 -29.70961 -29.04433 -26.88971 -24.66304 -24.23110 -23.31793 -22.49327 -21.55966 -20.98630 -19.79620 -19.65218 -18.95037 -17.57420 -17.13893 -16.81779 -16.60895 -16.41140 -16.26697 -15.82643 -15.45638 -15.21567 -15.08250 -14.54014 -14.50878 -14.29027 -13.94904 -13.81037 -13.45553 -13.35981 -13.20894 -12.92009 -12.83442 -12.75502 -12.53807 -12.50874 -12.36179 -12.25405 -12.05204 -11.20109 -11.08728 -10.79365 -10.65974 -10.45934 -10.15191 -9.63928 -9.28566 -8.56341 -8.25653 -6.42182 -0.60660 -0.18477 0.79275 1.36403 1.39297 1.48799 1.53213 1.63679 2.00625 2.34051 2.47754 2.87788 2.97117 3.18877 3.40093 3.54680 3.81084 3.93497 3.95777 4.07574 4.10509 4.14671 4.28368 4.34860 4.42767 4.46220 4.52599 4.62661 4.76114 4.85450 4.93622 5.02814 5.13659 5.15436 5.17481 5.20840 5.31887 5.35642 5.38643 5.53864 5.63806 5.69885 5.75074 5.80065 6.05072 6.14302 6.28024 6.62201 6.86056 7.28949 7.43675 8.79227 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.004221 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.204354 B = 6631.356540 C = 7757.775824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.036 3.964 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.557 4.557 8 H 0.044 0.956 9 C 0.233 3.767 10 O -0.597 6.597 11 C -0.119 4.119 12 C 0.067 3.933 13 N -0.451 5.451 14 C 0.393 3.607 15 N -0.568 5.568 16 C 0.078 3.922 17 C -0.103 4.103 18 C -0.102 4.102 19 C -0.096 4.096 20 C -0.118 4.118 21 C 0.047 3.953 22 N -0.367 5.367 23 C 0.005 3.995 24 C -0.175 4.175 25 C -0.133 4.133 26 C -0.061 4.061 27 C 0.067 3.933 28 H 0.273 0.727 29 H 0.379 0.621 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.111 0.889 34 H 0.130 0.870 35 H 0.167 0.833 36 H 0.177 0.823 37 H 0.161 0.839 38 H 0.212 0.788 39 H 0.187 0.813 40 H 0.158 0.842 41 H 0.071 0.929 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.585 -13.964 -12.335 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.165 4.165 3 Si 0.781 3.219 4 H -0.200 1.200 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.595 4.595 8 H 0.062 0.938 9 C 0.193 3.807 10 O -0.406 6.406 11 C -0.158 4.158 12 C -0.058 4.058 13 N -0.169 5.169 14 C 0.130 3.870 15 N -0.286 5.286 16 C -0.032 4.032 17 C -0.123 4.123 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.138 4.138 21 C -0.050 4.050 22 N -0.035 5.035 23 C -0.127 4.127 24 C -0.198 4.198 25 C -0.161 4.161 26 C -0.171 4.171 27 C -0.060 4.060 28 H 0.082 0.918 29 H 0.229 0.771 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.129 0.871 34 H 0.148 0.852 35 H 0.184 0.816 36 H 0.194 0.806 37 H 0.179 0.821 38 H 0.228 0.772 39 H 0.204 0.796 40 H 0.176 0.824 41 H 0.089 0.911 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.997 -14.322 -11.263 21.816 hybrid contribution 0.049 1.759 -0.221 1.773 sum 12.046 -12.564 -11.485 20.853 Atomic orbital electron populations 1.69709 1.06499 1.28421 1.49827 1.25592 0.95856 1.01864 0.93174 0.85596 0.78611 0.79333 0.78314 1.19954 1.19892 1.20365 1.21830 0.92923 0.92043 1.52752 0.93812 1.19563 0.86937 0.91110 0.83045 1.86113 1.52060 1.54477 1.47960 1.22934 0.97071 0.98647 0.97116 1.23218 0.96824 0.91438 0.94317 1.61358 1.18421 1.30732 1.06418 1.21012 0.88514 0.90366 0.87062 1.68819 0.97478 1.26492 1.35783 1.18863 0.93277 0.97730 0.93326 1.21154 0.90159 1.00753 1.00237 1.21517 0.97954 0.96164 0.96464 1.21546 0.98266 0.97163 0.94472 1.21093 0.89720 1.01067 1.01899 1.18893 0.86549 1.03754 0.95817 1.41786 1.04821 1.36602 1.20308 1.22611 0.98544 1.01802 0.89708 1.21382 0.92908 1.03913 1.01560 1.21460 0.98014 1.01448 0.95202 1.20034 0.88612 1.08887 0.99553 1.22657 0.99502 0.93780 0.90062 0.91758 0.77067 0.92310 0.90847 0.94375 0.87070 0.85182 0.81581 0.80593 0.82101 0.77176 0.79556 0.82422 0.91124 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.08 10.38 21.45 0.22 -47.85 16 2 C 0.04 1.94 5.01 84.65 0.42 2.36 16 3 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.56 -31.22 8.23 25.60 0.21 -31.01 16 8 H 0.04 2.54 7.35 -2.91 -0.02 2.52 16 9 C 0.23 12.24 0.99 -10.66 -0.01 12.23 16 10 O -0.60 -32.79 12.93 -148.98 -1.93 -34.72 16 11 C -0.12 -5.58 5.89 31.86 0.19 -5.39 16 12 C 0.07 2.74 5.92 86.71 0.51 3.25 16 13 N -0.45 -19.61 5.30 -682.82 -3.62 -23.23 16 14 C 0.39 16.35 6.37 135.49 0.86 17.21 16 15 N -0.57 -24.35 8.18 -181.57 -1.48 -25.83 16 16 C 0.08 2.81 6.58 39.46 0.26 3.07 16 17 C -0.10 -3.00 9.98 22.57 0.23 -2.78 16 18 C -0.10 -1.96 10.01 22.23 0.22 -1.74 16 19 C -0.10 -1.51 10.03 22.31 0.22 -1.28 16 20 C -0.12 -2.35 9.61 22.35 0.21 -2.14 16 21 C 0.05 1.42 6.62 38.61 0.26 1.68 16 22 N -0.37 -10.93 3.01 -334.40 -1.01 -11.93 16 23 C 0.00 0.10 11.09 83.47 0.93 1.03 16 24 C -0.18 -3.63 10.81 22.05 0.24 -3.39 16 25 C -0.13 -3.75 10.19 22.56 0.23 -3.52 16 26 C -0.06 -2.14 6.57 40.15 0.26 -1.88 16 27 C 0.07 3.31 5.83 86.44 0.50 3.81 16 28 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 29 H 0.38 20.74 7.19 -74.06 -0.53 20.21 16 30 H 0.06 2.67 8.08 -2.39 -0.02 2.66 16 31 H 0.07 3.69 6.64 -2.39 -0.02 3.68 16 32 H 0.04 1.65 7.99 -2.39 -0.02 1.64 16 33 H 0.11 3.75 6.64 -2.39 -0.02 3.73 16 34 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 35 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.16 2.03 7.41 -2.91 -0.02 2.01 16 38 H 0.21 2.35 7.67 -2.91 -0.02 2.32 16 39 H 0.19 2.39 8.06 -2.91 -0.02 2.36 16 40 H 0.16 4.07 7.09 -2.91 -0.02 4.05 16 41 H 0.07 3.70 5.75 -2.39 -0.01 3.69 16 42 H 0.06 3.06 7.96 -2.38 -0.02 3.04 16 Total: -1.00 -70.16 340.69 0.50 -69.66 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: 0.54 Total: 37.36 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.75 Total: -8.47 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -5.89 Total: -108.85 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -1.93 Total: -34.72 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -70.16 0.50 -69.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596286116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.998 kcal (2) G-P(sol) polarization free energy of solvation -70.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds