Wall clock time and date at job start Tue Mar 31 2020 14:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47063 * 270.00093 * 3 2 1 5 5 H 1.48501 * 109.46752 * 30.00225 * 3 2 1 6 6 H 1.48498 * 109.47017 * 149.99962 * 3 2 1 7 7 C 1.37876 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00117 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.53274 * 60.09647 * 9 7 2 11 11 C 1.53119 * 109.50339 * 300.00137 * 9 7 2 12 12 C 1.53124 * 109.15841 * 182.40666 * 11 9 7 13 13 C 1.53032 * 109.28012 * 57.65244 * 12 11 9 14 14 N 1.46846 * 109.52260 * 300.82015 * 13 12 11 15 15 C 1.39094 * 110.99982 * 185.84118 * 14 13 12 16 16 C 1.40878 * 119.58927 * 55.77131 * 15 14 13 17 17 C 1.35902 * 120.09384 * 179.77707 * 16 15 14 18 18 C 1.40805 * 119.13987 * 0.47486 * 17 16 15 19 19 N 1.32358 * 133.77776 * 179.77946 * 18 17 16 20 20 N 1.28750 * 109.23034 * 180.02562 * 19 18 17 21 21 C 1.31032 * 110.16742 * 359.97438 * 20 19 18 22 22 C 1.50698 * 126.15653 * 180.02562 * 21 20 19 23 23 F 1.39898 * 109.47392 * 29.94885 * 22 21 20 24 24 F 1.39902 * 109.46799 * 149.94814 * 22 21 20 25 25 N 1.34986 * 107.68200 * 0.02562 * 21 20 19 26 26 N 1.31248 * 119.58939 * 236.04665 * 15 14 13 27 27 C 1.46846 * 111.19997 * 61.74591 * 14 13 12 28 28 H 0.97003 * 120.00285 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.52394 * 62.49954 * 11 9 7 30 30 H 1.09003 * 109.56984 * 302.33898 * 11 9 7 31 31 H 1.08999 * 109.49853 * 297.70868 * 12 11 9 32 32 H 1.08996 * 109.49839 * 177.59898 * 12 11 9 33 33 H 1.09001 * 109.46314 * 180.80749 * 13 12 11 34 34 H 1.08999 * 109.45415 * 60.83229 * 13 12 11 35 35 H 1.07997 * 119.94911 * 0.02562 * 16 15 14 36 36 H 1.07999 * 120.43440 * 180.23336 * 17 16 15 37 37 H 1.09004 * 109.47167 * 269.94712 * 22 21 20 38 38 H 1.08996 * 109.46231 * 58.27402 * 27 14 13 39 39 H 1.09004 * 109.46418 * 178.24241 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6248 -2.5585 -0.8908 11 6 0.3708 -2.5813 1.2497 12 6 -0.3448 -3.9348 1.2725 13 6 0.6952 -5.0569 1.2399 14 7 1.5110 -4.9347 0.0250 15 6 2.3797 -6.0135 -0.1027 16 6 1.8648 -7.3249 -0.1040 17 6 2.7037 -8.3862 -0.2327 18 6 4.0875 -8.1557 -0.3537 19 7 5.1397 -8.9476 -0.4865 20 7 6.2055 -8.2287 -0.5563 21 6 5.8990 -6.9574 -0.4738 22 6 6.8686 -5.8045 -0.5166 23 9 7.9751 -6.1545 -1.2978 24 9 6.2391 -4.6864 -1.0742 25 7 4.5586 -6.8664 -0.3434 26 7 3.6693 -5.7974 -0.2150 27 6 2.2448 -3.6629 0.0038 28 1 -0.4851 0.8400 0.0004 29 1 -0.3671 -1.7793 1.2291 30 1 0.9915 -2.4824 2.1403 31 1 -0.9960 -4.0167 0.4022 32 1 -0.9400 -4.0164 2.1819 33 1 0.1885 -6.0220 1.2415 34 1 1.3373 -4.9824 2.1175 35 1 0.8014 -7.4867 -0.0067 36 1 2.3146 -9.3937 -0.2382 37 1 7.1981 -5.5690 0.4954 38 1 2.8796 -3.5952 0.8871 39 1 2.8635 -3.6155 -0.8924 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596327761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:51 Heat of formation + Delta-G solvation = 52.506520 kcal Electronic energy + Delta-G solvation = -27540.887479 eV Core-core repulsion = 23350.308880 eV Total energy + Delta-G solvation = -4190.578599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.17801 -47.19386 -43.56467 -40.14144 -37.60528 -34.44137 -34.07141 -32.47362 -31.27869 -30.32218 -30.18125 -27.02099 -25.57987 -25.07043 -23.95000 -22.44157 -22.03681 -21.54359 -19.22748 -18.90888 -18.03492 -17.94564 -17.47310 -17.03039 -16.57626 -16.52831 -16.03221 -14.84470 -14.57721 -14.40413 -14.11303 -14.02221 -13.83766 -13.50100 -13.42695 -13.32820 -12.83346 -12.80066 -12.66217 -12.49124 -12.10404 -11.85582 -11.55650 -11.18552 -11.08832 -10.98814 -10.81459 -10.59265 -10.44151 -10.37385 -10.07708 -9.72284 -9.42202 -8.98770 -8.92954 -8.58268 -8.40568 -6.11764 -4.18060 0.11254 0.80947 1.41245 2.19151 2.81426 2.93827 3.24862 3.31901 3.34461 3.44540 3.73888 3.83713 3.92768 4.30595 4.36618 4.45188 4.57621 4.80742 5.05019 5.17733 5.19379 5.25803 5.29976 5.38379 5.44838 5.57204 5.76747 5.80523 6.08200 6.14350 6.28251 6.43337 6.56005 6.65647 6.91965 7.05538 7.26209 7.38926 7.60393 7.81856 7.96007 8.05478 8.27274 8.84917 9.47603 10.94615 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013833 B = 0.004145 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.642370 B = 6754.001611 C = 8618.356009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.053 3.947 10 H 0.037 0.963 11 C -0.117 4.117 12 C -0.119 4.119 13 C 0.064 3.936 14 N -0.449 5.449 15 C 0.346 3.654 16 C -0.138 4.138 17 C -0.012 4.012 18 C 0.144 3.856 19 N -0.254 5.254 20 N -0.225 5.225 21 C 0.112 3.888 22 C 0.376 3.624 23 F -0.178 7.178 24 F -0.175 7.175 25 N -0.261 5.261 26 N -0.297 5.297 27 C 0.065 3.935 28 H 0.261 0.739 29 H 0.098 0.902 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.166 0.834 36 H 0.173 0.827 37 H 0.141 0.859 38 H 0.047 0.953 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 -14.016 3.306 14.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.035 3.965 10 H 0.055 0.945 11 C -0.155 4.155 12 C -0.157 4.157 13 C -0.062 4.062 14 N -0.168 5.168 15 C 0.081 3.919 16 C -0.166 4.166 17 C -0.040 4.040 18 C -0.110 4.110 19 N -0.104 5.104 20 N -0.072 5.072 21 C -0.154 4.154 22 C 0.320 3.680 23 F -0.159 7.159 24 F -0.156 7.156 25 N -0.035 5.035 26 N -0.121 5.121 27 C -0.060 4.060 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.184 0.816 36 H 0.190 0.810 37 H 0.158 0.842 38 H 0.065 0.935 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.759 -14.276 2.729 15.012 hybrid contribution -0.367 1.376 0.361 1.469 sum 3.392 -12.899 3.090 13.691 Atomic orbital electron populations 1.69860 1.05874 1.26633 1.50323 1.24903 0.94851 0.99074 0.94784 0.86582 0.79875 0.83264 0.78255 1.20582 1.21200 1.19867 1.21045 0.93018 0.90139 1.51283 0.92471 1.18759 0.92406 0.90266 0.95113 0.94470 1.21761 1.00369 0.94669 0.98685 1.21764 0.96714 0.95755 1.01498 1.22366 0.95486 1.00936 0.87383 1.59355 1.19072 1.02214 1.36131 1.21403 0.87982 0.93020 0.89460 1.21572 1.02835 0.90257 1.01918 1.20413 0.86593 1.01743 0.95259 1.22614 0.97625 0.82511 1.08250 1.75005 0.93117 1.23551 1.18677 1.74529 1.20199 0.97609 1.14823 1.24850 0.81246 0.97475 1.11870 1.19248 0.77529 0.77532 0.93686 1.93069 1.52767 1.92227 1.77814 1.93145 1.82648 1.52182 1.87597 1.47076 1.06223 1.05652 1.44525 1.76360 1.00865 1.06689 1.28226 1.22580 0.96552 0.85092 1.01729 0.92877 0.88343 0.94531 0.91330 0.91989 0.90576 0.93300 0.81607 0.80992 0.84169 0.93505 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.77 11.35 55.43 0.63 -23.14 16 2 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -13.28 8.56 -34.44 -0.29 -13.57 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.05 1.21 2.26 -91.69 -0.21 1.00 16 10 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 11 C -0.12 -2.40 5.02 -26.61 -0.13 -2.53 16 12 C -0.12 -1.84 6.09 -26.65 -0.16 -2.00 16 13 C 0.06 0.85 5.25 -3.84 -0.02 0.83 16 14 N -0.45 -7.05 4.68 -172.95 -0.81 -7.86 16 15 C 0.35 4.98 6.51 -155.24 -1.01 3.97 16 16 C -0.14 -1.43 9.11 -39.42 -0.36 -1.79 16 17 C -0.01 -0.12 10.11 -39.45 -0.40 -0.52 16 18 C 0.14 2.05 7.99 -156.08 -1.25 0.81 16 19 N -0.25 -3.97 12.33 31.13 0.38 -3.59 16 20 N -0.22 -3.61 12.15 32.78 0.40 -3.21 16 21 C 0.11 1.70 7.76 -155.02 -1.20 0.50 16 22 C 0.38 4.81 5.86 36.00 0.21 5.02 16 23 F -0.18 -2.36 17.28 2.25 0.04 -2.32 16 24 F -0.17 -2.70 16.92 2.25 0.04 -2.67 16 25 N -0.26 -4.10 4.00 -9.61 -0.04 -4.14 16 26 N -0.30 -4.86 9.84 31.32 0.31 -4.55 16 27 C 0.07 1.27 3.87 -3.83 -0.01 1.25 16 28 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.10 2.32 6.15 -51.93 -0.32 2.00 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.74 6.66 -51.93 -0.35 0.39 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.17 1.14 7.14 -52.49 -0.37 0.77 16 36 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.14 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.05 0.93 8.11 -51.93 -0.42 0.51 16 39 H 0.08 1.64 7.71 -51.93 -0.40 1.24 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -30.15 331.85 -8.37 -38.52 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -4.36 Total: -2.04 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -4.94 Total: -5.42 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.87 Total: -46.49 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.08 Total: -4.98 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.15 -8.37 -38.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596327761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.023 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds