Wall clock time and date at job start Tue Mar 31 2020 14:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47063 * 270.00093 * 3 2 1 5 5 H 1.48501 * 109.46752 * 30.00225 * 3 2 1 6 6 H 1.48498 * 109.47017 * 149.99962 * 3 2 1 7 7 C 1.37876 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00117 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.53274 * 60.09647 * 9 7 2 11 11 C 1.53119 * 109.50339 * 300.00137 * 9 7 2 12 12 C 1.53124 * 109.15841 * 182.40666 * 11 9 7 13 13 C 1.53032 * 109.28012 * 57.65244 * 12 11 9 14 14 N 1.46846 * 109.52260 * 300.82015 * 13 12 11 15 15 C 1.39094 * 110.99982 * 185.84118 * 14 13 12 16 16 C 1.40878 * 119.58927 * 55.77131 * 15 14 13 17 17 C 1.35902 * 120.09384 * 179.77707 * 16 15 14 18 18 C 1.40805 * 119.13987 * 0.47486 * 17 16 15 19 19 N 1.32358 * 133.77776 * 179.77946 * 18 17 16 20 20 N 1.28750 * 109.23034 * 180.02562 * 19 18 17 21 21 C 1.31032 * 110.16742 * 359.97438 * 20 19 18 22 22 C 1.50698 * 126.15653 * 180.02562 * 21 20 19 23 23 F 1.39898 * 109.47392 * 29.94885 * 22 21 20 24 24 F 1.39902 * 109.46799 * 149.94814 * 22 21 20 25 25 N 1.34986 * 107.68200 * 0.02562 * 21 20 19 26 26 N 1.31248 * 119.58939 * 236.04665 * 15 14 13 27 27 C 1.46846 * 111.19997 * 61.74591 * 14 13 12 28 28 H 0.97003 * 120.00285 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.52394 * 62.49954 * 11 9 7 30 30 H 1.09003 * 109.56984 * 302.33898 * 11 9 7 31 31 H 1.08999 * 109.49853 * 297.70868 * 12 11 9 32 32 H 1.08996 * 109.49839 * 177.59898 * 12 11 9 33 33 H 1.09001 * 109.46314 * 180.80749 * 13 12 11 34 34 H 1.08999 * 109.45415 * 60.83229 * 13 12 11 35 35 H 1.07997 * 119.94911 * 0.02562 * 16 15 14 36 36 H 1.07999 * 120.43440 * 180.23336 * 17 16 15 37 37 H 1.09004 * 109.47167 * 269.94712 * 22 21 20 38 38 H 1.08996 * 109.46231 * 58.27402 * 27 14 13 39 39 H 1.09004 * 109.46418 * 178.24241 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6248 -2.5585 -0.8908 11 6 0.3708 -2.5813 1.2497 12 6 -0.3448 -3.9348 1.2725 13 6 0.6952 -5.0569 1.2399 14 7 1.5110 -4.9347 0.0250 15 6 2.3797 -6.0135 -0.1027 16 6 1.8648 -7.3249 -0.1040 17 6 2.7037 -8.3862 -0.2327 18 6 4.0875 -8.1557 -0.3537 19 7 5.1397 -8.9476 -0.4865 20 7 6.2055 -8.2287 -0.5563 21 6 5.8990 -6.9574 -0.4738 22 6 6.8686 -5.8045 -0.5166 23 9 7.9751 -6.1545 -1.2978 24 9 6.2391 -4.6864 -1.0742 25 7 4.5586 -6.8664 -0.3434 26 7 3.6693 -5.7974 -0.2150 27 6 2.2448 -3.6629 0.0038 28 1 -0.4851 0.8400 0.0004 29 1 -0.3671 -1.7793 1.2291 30 1 0.9915 -2.4824 2.1403 31 1 -0.9960 -4.0167 0.4022 32 1 -0.9400 -4.0164 2.1819 33 1 0.1885 -6.0220 1.2415 34 1 1.3373 -4.9824 2.1175 35 1 0.8014 -7.4867 -0.0067 36 1 2.3146 -9.3937 -0.2382 37 1 7.1981 -5.5690 0.4954 38 1 2.8796 -3.5952 0.8871 39 1 2.8635 -3.6155 -0.8924 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596327761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:50 Heat of formation + Delta-G solvation = 35.181107 kcal Electronic energy + Delta-G solvation = -27541.638766 eV Core-core repulsion = 23350.308880 eV Total energy + Delta-G solvation = -4191.329885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.25556 -48.28595 -44.65797 -41.32971 -38.85107 -35.88227 -35.22228 -33.99704 -32.42317 -31.69996 -31.56327 -28.09217 -27.16240 -26.42516 -25.12796 -23.70771 -23.31269 -22.77278 -20.65171 -20.08369 -19.17136 -19.02218 -18.72538 -18.12785 -17.96744 -17.64457 -17.40979 -16.54336 -15.94459 -15.57673 -15.22453 -15.13179 -14.88951 -14.79342 -14.60000 -14.45733 -14.35946 -14.19432 -14.01651 -13.67750 -13.48210 -12.92128 -12.89737 -12.74796 -12.58598 -12.53046 -12.22769 -11.91795 -11.82718 -11.77132 -11.53762 -11.36907 -11.06526 -10.72899 -10.40903 -9.98138 -9.80136 -8.11887 -6.24395 -0.79567 -0.25368 0.32873 1.07245 1.39714 1.42151 1.50702 1.82207 1.91859 2.30243 2.45882 2.79211 2.86771 2.93584 3.16663 3.28480 3.50740 3.63207 3.91009 3.94832 4.11678 4.19293 4.25949 4.36490 4.47612 4.50413 4.55539 4.62304 4.78694 4.84694 4.93297 5.02027 5.06271 5.21131 5.44086 5.59905 5.62287 5.81826 5.98565 6.11673 6.28741 6.38604 6.85148 6.93455 7.43589 8.92607 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.013833 B = 0.004145 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.642370 B = 6754.001611 C = 8618.356009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.946 3.054 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.046 0.954 9 C 0.053 3.947 10 H 0.004 0.996 11 C -0.111 4.111 12 C -0.111 4.111 13 C 0.063 3.937 14 N -0.453 5.453 15 C 0.341 3.659 16 C -0.127 4.127 17 C 0.000 4.000 18 C 0.141 3.859 19 N -0.274 5.274 20 N -0.243 5.243 21 C 0.101 3.899 22 C 0.374 3.626 23 F -0.182 7.182 24 F -0.194 7.194 25 N -0.272 5.272 26 N -0.335 5.335 27 C 0.088 3.912 28 H 0.262 0.738 29 H 0.064 0.936 30 H 0.028 0.972 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.050 0.950 35 H 0.213 0.787 36 H 0.220 0.780 37 H 0.183 0.817 38 H 0.037 0.963 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 -16.122 4.339 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.772 3.228 4 H -0.205 1.205 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.064 0.936 9 C 0.034 3.966 10 H 0.022 0.978 11 C -0.149 4.149 12 C -0.148 4.148 13 C -0.061 4.061 14 N -0.172 5.172 15 C 0.078 3.922 16 C -0.154 4.154 17 C -0.027 4.027 18 C -0.114 4.114 19 N -0.123 5.123 20 N -0.090 5.090 21 C -0.166 4.166 22 C 0.318 3.682 23 F -0.163 7.163 24 F -0.175 7.175 25 N -0.046 5.046 26 N -0.160 5.160 27 C -0.038 4.038 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.148 0.852 34 H 0.069 0.931 35 H 0.230 0.770 36 H 0.237 0.763 37 H 0.200 0.800 38 H 0.055 0.945 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.587 -16.406 3.763 17.029 hybrid contribution 0.001 2.016 0.010 2.016 sum 2.588 -14.390 3.773 15.100 Atomic orbital electron populations 1.69977 1.06795 1.27168 1.50874 1.25554 0.95621 1.01805 0.94677 0.85737 0.78875 0.80025 0.78119 1.20539 1.20533 1.19636 1.21407 0.92825 0.92135 1.51244 0.93607 1.18645 0.92705 0.90512 0.94757 0.97774 1.21547 0.99287 0.97180 0.96930 1.21653 0.97048 0.93250 1.02898 1.22535 0.94724 1.02520 0.86304 1.59313 1.19102 1.00941 1.37820 1.21682 0.87451 0.94253 0.88836 1.21917 1.04937 0.87660 1.00867 1.21034 0.84284 1.03944 0.93465 1.23368 0.99130 0.81763 1.07122 1.74931 0.93525 1.24007 1.19871 1.74467 1.20815 0.98067 1.15606 1.25228 0.81768 0.97785 1.11838 1.19765 0.76893 0.76358 0.95174 1.93052 1.52815 1.92211 1.78233 1.93103 1.83136 1.53143 1.88090 1.47135 1.06320 1.06045 1.45118 1.76259 1.02208 1.07782 1.29721 1.21999 0.95338 0.86412 1.00088 0.92897 0.91719 0.95348 0.91636 0.88974 0.85158 0.93115 0.77042 0.76306 0.79996 0.94455 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.93 11.35 21.45 0.24 -49.68 16 2 C 0.02 1.23 5.30 84.65 0.45 1.68 16 3 Si 0.95 42.71 29.54 68.60 2.03 44.73 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.54 -28.72 8.56 25.60 0.22 -28.50 16 8 H 0.05 2.48 7.74 -2.91 -0.02 2.45 16 9 C 0.05 2.46 2.26 -11.49 -0.03 2.44 16 10 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 11 C -0.11 -4.61 5.02 30.68 0.15 -4.46 16 12 C -0.11 -3.16 6.09 30.65 0.19 -2.97 16 13 C 0.06 1.45 5.25 86.32 0.45 1.91 16 14 N -0.45 -13.41 4.68 -701.10 -3.28 -16.69 16 15 C 0.34 9.00 6.51 133.80 0.87 9.87 16 16 C -0.13 -2.00 9.11 22.37 0.20 -1.80 16 17 C 0.00 0.00 10.11 22.36 0.23 0.23 16 18 C 0.14 3.71 7.99 134.07 1.07 4.78 16 19 N -0.27 -8.25 12.33 -55.42 -0.68 -8.94 16 20 N -0.24 -7.73 12.15 -50.20 -0.61 -8.34 16 21 C 0.10 3.04 7.76 137.99 1.07 4.11 16 22 C 0.37 9.53 5.86 71.24 0.42 9.95 16 23 F -0.18 -4.84 17.28 44.97 0.78 -4.06 16 24 F -0.19 -6.15 16.92 44.97 0.76 -5.39 16 25 N -0.27 -8.31 4.00 -184.32 -0.74 -9.05 16 26 N -0.33 -10.71 9.84 -54.81 -0.54 -11.25 16 27 C 0.09 3.48 3.87 86.33 0.33 3.82 16 28 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 29 H 0.06 3.12 6.15 -2.39 -0.01 3.11 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.13 1.67 6.66 -2.39 -0.02 1.65 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.21 1.35 7.14 -2.91 -0.02 1.33 16 36 H 0.22 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.18 3.01 8.14 -2.39 -0.02 2.99 16 38 H 0.04 1.52 8.11 -2.39 -0.02 1.50 16 39 H 0.05 2.38 7.71 -2.38 -0.02 2.36 16 Total: -1.00 -70.87 331.85 4.68 -66.19 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: 1.10 Total: 1.44 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 5.63 Total: 1.05 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -5.61 Total: -103.96 kcal Atomic # 9 Polarization: -10.99 SS G_CDS: 1.54 Total: -9.45 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -70.87 4.68 -66.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596327761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.367 kcal (2) G-P(sol) polarization free energy of solvation -70.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds