Wall clock time and date at job start Tue Mar 31 2020 15:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.27571 * 126.41652 * 2 1 4 4 N 1.39150 * 113.16341 * 180.02562 * 3 2 1 5 5 C 1.46496 * 124.43631 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47229 * 269.97521 * 5 4 3 7 7 C 1.39336 * 120.03100 * 90.00160 * 6 5 4 8 8 N 1.31078 * 121.74580 * 179.97438 * 7 6 5 9 9 C 1.33678 * 121.32622 * 0.02562 * 8 7 6 10 10 C 1.40598 * 121.07481 * 180.02562 * 9 8 7 11 11 C 1.36067 * 119.74765 * 179.97438 * 10 9 8 12 12 C 1.39350 * 121.06828 * 0.04347 * 11 10 9 13 13 C 1.36139 * 120.87194 * 359.95069 * 12 11 10 14 14 C 1.40436 * 119.61375 * 0.03068 * 13 12 11 15 15 C 1.36574 * 120.03680 * 269.72698 * 6 5 4 16 16 C 1.34952 * 111.12019 * 0.02562 * 4 3 2 17 17 O 1.21301 * 127.49388 * 180.02562 * 16 4 3 18 18 C 1.51440 * 126.41736 * 180.02562 * 2 1 3 19 19 H 1.09003 * 110.60749 * 61.28807 * 18 2 1 20 20 C 1.53006 * 110.60338 * 298.47703 * 18 2 1 21 21 C 1.50698 * 109.46914 * 174.99889 * 20 18 2 22 22 H 1.07999 * 120.00165 * 0.02562 * 21 20 18 23 23 C 1.37873 * 120.00194 * 179.97438 * 21 20 18 24 24 N 1.31512 * 119.99839 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00211 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47130 * 89.99894 * 25 23 21 27 27 H 1.48495 * 109.47075 * 209.99589 * 25 23 21 28 28 H 1.48496 * 109.47207 * 330.00095 * 25 23 21 29 29 H 1.08999 * 109.47260 * 269.95248 * 1 2 3 30 30 H 1.09001 * 109.47634 * 29.95352 * 1 2 3 31 31 H 1.09002 * 109.47696 * 149.95593 * 1 2 3 32 32 H 1.08999 * 109.47481 * 29.97650 * 5 4 3 33 33 H 1.09000 * 109.47104 * 149.98106 * 5 4 3 34 34 H 1.08002 * 119.12061 * 359.97438 * 7 6 5 35 35 H 1.08001 * 120.12011 * 359.95575 * 10 9 8 36 36 H 1.08001 * 119.46449 * 180.02562 * 11 10 9 37 37 H 1.08001 * 119.57063 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.19894 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.91904 * 0.02562 * 15 6 5 40 40 H 1.08995 * 109.46794 * 295.00084 * 20 18 2 41 41 H 1.09000 * 109.47314 * 55.00218 * 20 18 2 42 42 H 0.97003 * 120.00488 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7076 -0.0006 5 6 4.7021 1.6937 -0.0002 6 6 5.0737 2.0324 -1.4208 7 6 4.4336 3.0813 -2.0779 8 7 4.7305 3.4050 -3.3128 9 6 5.6646 2.7402 -4.0003 10 6 5.9793 3.0923 -5.3245 11 6 6.9351 2.3974 -5.9990 12 6 7.6112 1.3369 -5.3989 13 6 7.3339 0.9667 -4.1185 14 6 6.3535 1.6618 -3.3920 15 6 6.0420 1.3153 -2.0637 16 6 3.8035 -0.6292 -0.0016 17 8 4.8579 -1.2289 -0.0018 18 6 2.4060 -1.2187 -0.0005 19 1 2.2394 -1.8180 -0.8956 20 6 2.1761 -2.0579 1.2580 21 6 2.9907 -3.3230 1.1738 22 1 3.6107 -3.5096 0.3094 23 6 2.9453 -4.2418 2.2008 24 7 2.1916 -4.0139 3.2541 25 14 3.9556 -5.8095 2.0968 26 1 5.2941 -5.5767 2.6966 27 1 3.2633 -6.8945 2.8375 28 1 4.1127 -6.2037 0.6737 29 1 -0.3634 -0.0009 1.0276 30 1 -0.3634 0.8904 -0.5131 31 1 -0.3634 -0.8896 -0.5145 32 1 4.3718 2.5963 0.5140 33 1 5.5699 1.2799 0.5135 34 1 3.6726 3.6422 -1.5557 35 1 5.4640 3.9111 -5.8046 36 1 7.1735 2.6721 -7.0159 37 1 8.3653 0.8016 -5.9568 38 1 7.8648 0.1433 -3.6639 39 1 6.5512 0.5018 -1.5683 40 1 2.4804 -1.4875 2.1355 41 1 1.1190 -2.3112 1.3378 42 1 2.1593 -4.6604 3.9765 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601944104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:23 Heat of formation + Delta-G solvation = 47.925154 kcal Electronic energy + Delta-G solvation = -26177.079956 eV Core-core repulsion = 22508.239473 eV Total energy + Delta-G solvation = -3668.840483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.38485 -41.76325 -38.45821 -38.35405 -36.19165 -35.19186 -34.10069 -32.37524 -31.99622 -31.16254 -29.49269 -28.21933 -26.75237 -25.29583 -24.46868 -23.41981 -23.06052 -21.70577 -20.51673 -19.10063 -18.59602 -18.35783 -17.90055 -17.60885 -16.86162 -16.48703 -16.07149 -15.86898 -15.62146 -15.40079 -15.33245 -14.84116 -14.60478 -14.38504 -14.22572 -14.12887 -14.10249 -13.54916 -13.42696 -13.27783 -13.08214 -12.83927 -12.81966 -12.74940 -12.62495 -12.47264 -12.26069 -12.03843 -11.63935 -11.57353 -11.26159 -10.67104 -10.64872 -10.44394 -9.80506 -9.60505 -9.30812 -8.23412 -6.30990 -0.68729 -0.31039 0.69074 0.88242 1.36432 1.38415 1.43631 1.49144 1.61039 1.99908 2.39258 2.97946 3.04962 3.12279 3.23053 3.30745 3.51047 3.59541 3.67500 3.85659 3.94449 4.01224 4.14978 4.27008 4.32291 4.32998 4.44424 4.51495 4.62613 4.73858 4.76350 4.89664 4.95326 4.97925 5.05695 5.11500 5.18414 5.33327 5.34336 5.38453 5.42639 5.49494 5.56474 5.74161 5.84677 6.13905 6.69799 6.78767 6.79018 6.90609 7.36688 8.87716 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014882 B = 0.003364 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.992508 B = 8321.103665 C = 9562.360166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.116 3.884 3 N -0.256 5.256 4 N -0.475 5.475 5 C 0.183 3.817 6 C -0.168 4.168 7 C 0.153 3.847 8 N -0.494 5.494 9 C 0.104 3.896 10 C -0.112 4.112 11 C -0.088 4.088 12 C -0.113 4.113 13 C -0.109 4.109 14 C -0.123 4.123 15 C -0.046 4.046 16 C 0.499 3.501 17 O -0.527 6.527 18 C -0.137 4.137 19 H 0.124 0.876 20 C 0.069 3.931 21 C -0.531 4.531 22 H 0.051 0.949 23 C 0.010 3.990 24 N -0.926 5.926 25 Si 0.954 3.046 26 H -0.283 1.283 27 H -0.274 1.274 28 H -0.267 1.267 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.180 0.820 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.139 0.861 39 H 0.135 0.865 40 H -0.013 1.013 41 H 0.038 0.962 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.018 15.048 -15.461 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 N -0.062 5.062 4 N -0.294 5.294 5 C 0.063 3.937 6 C -0.171 4.171 7 C -0.020 4.020 8 N -0.202 5.202 9 C -0.017 4.017 10 C -0.131 4.131 11 C -0.108 4.108 12 C -0.131 4.131 13 C -0.127 4.127 14 C -0.125 4.125 15 C -0.072 4.072 16 C 0.287 3.713 17 O -0.400 6.400 18 C -0.161 4.161 19 H 0.142 0.858 20 C 0.031 3.969 21 C -0.569 4.569 22 H 0.069 0.931 23 C -0.188 4.188 24 N -0.566 5.566 25 Si 0.779 3.221 26 H -0.209 1.209 27 H -0.199 1.199 28 H -0.192 1.192 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.145 0.855 33 H 0.112 0.888 34 H 0.197 0.803 35 H 0.164 0.836 36 H 0.183 0.817 37 H 0.177 0.823 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.006 0.994 41 H 0.056 0.944 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.413 16.436 -15.811 23.229 hybrid contribution 1.211 -2.571 1.026 3.021 sum 5.624 13.865 -14.785 21.035 Atomic orbital electron populations 1.20538 0.81808 1.05702 1.05114 1.25995 0.98994 0.89472 0.93197 1.74556 0.88207 1.26517 1.16936 1.49921 1.03660 1.05471 1.70329 1.20361 0.87839 0.93028 0.92517 1.20928 0.98720 0.98790 0.98650 1.23149 0.95934 0.92989 0.89893 1.68108 1.14931 1.28779 1.08380 1.19363 0.93520 0.92868 0.95917 1.21062 0.99070 1.01434 0.91531 1.21361 0.93942 0.94071 1.01406 1.21353 1.00089 0.97169 0.94493 1.21307 0.96262 0.99441 0.95717 1.19089 0.99884 0.98493 0.95062 1.21649 0.95267 0.96930 0.93381 1.21619 0.91816 0.83264 0.74591 1.90651 1.32335 1.67044 1.49999 1.21971 0.91852 0.97784 1.04476 0.85838 1.18578 0.97762 0.92278 0.88275 1.21450 1.26480 1.04354 1.04601 0.93110 1.25725 0.96546 1.01599 0.94963 1.70032 1.40605 1.37362 1.08591 0.85611 0.78588 0.79356 0.78505 1.20882 1.19854 1.19160 0.88501 0.87623 0.88262 0.85497 0.88792 0.80300 0.83564 0.81651 0.82276 0.84301 0.84763 0.99436 0.94374 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 10.47 71.24 0.75 -0.84 16 2 C 0.12 3.71 6.93 46.83 0.32 4.04 16 3 N -0.26 -8.34 12.02 -40.85 -0.49 -8.83 16 4 N -0.47 -16.89 3.52 -465.41 -1.64 -18.53 16 5 C 0.18 5.18 6.37 85.63 0.55 5.73 16 6 C -0.17 -4.65 5.44 -19.99 -0.11 -4.76 16 7 C 0.15 4.00 10.81 85.07 0.92 4.92 16 8 N -0.49 -13.94 10.34 -188.63 -1.95 -15.90 16 9 C 0.10 2.82 6.60 40.29 0.27 3.09 16 10 C -0.11 -2.33 9.98 22.34 0.22 -2.10 16 11 C -0.09 -1.35 9.94 22.03 0.22 -1.13 16 12 C -0.11 -1.83 9.95 22.05 0.22 -1.61 16 13 C -0.11 -2.36 9.78 22.32 0.22 -2.14 16 14 C -0.12 -3.35 5.74 -21.28 -0.12 -3.47 16 15 C -0.05 -1.32 9.54 22.50 0.21 -1.11 16 16 C 0.50 21.80 7.59 87.94 0.67 22.47 16 17 O -0.53 -26.38 17.03 -3.09 -0.05 -26.43 16 18 C -0.14 -5.65 2.96 -11.74 -0.03 -5.69 16 19 H 0.12 4.94 8.14 -2.39 -0.02 4.92 16 20 C 0.07 3.49 4.49 29.85 0.13 3.62 16 21 C -0.53 -30.33 8.44 25.60 0.22 -30.11 16 22 H 0.05 2.97 7.43 -2.91 -0.02 2.95 16 23 C 0.01 0.58 5.46 84.65 0.46 1.04 16 24 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 25 Si 0.95 45.52 29.54 68.60 2.03 47.55 16 26 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 27 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 28 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 29 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.13 2.80 8.09 -2.39 -0.02 2.78 16 33 H 0.09 2.72 7.97 -2.39 -0.02 2.70 16 34 H 0.18 3.78 8.06 -2.91 -0.02 3.75 16 35 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 40 H -0.01 -0.72 8.12 -2.39 -0.02 -0.74 16 41 H 0.04 1.89 8.12 -2.39 -0.02 1.87 16 42 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -75.51 366.54 4.32 -71.19 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.03 Total: 13.63 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 5.11 Total: -8.06 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -3.80 Total: -97.88 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.05 Total: -26.43 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -75.51 4.32 -71.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601944104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.118 kcal (2) G-P(sol) polarization free energy of solvation -75.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds