Wall clock time and date at job start Tue Mar 31 2020 15:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.27569 * 126.41360 * 2 1 4 4 N 1.39149 * 113.16144 * 180.02562 * 3 2 1 5 5 C 1.46506 * 124.43713 * 180.26721 * 4 3 2 6 6 C 1.50705 * 109.46977 * 269.70214 * 5 4 3 7 7 C 1.39333 * 120.02948 * 90.00036 * 6 5 4 8 8 N 1.31088 * 121.74362 * 179.97438 * 7 6 5 9 9 C 1.33680 * 121.32054 * 359.97194 * 8 7 6 10 10 C 1.40597 * 121.06974 * 180.02562 * 9 8 7 11 11 C 1.36077 * 119.74948 * 179.97438 * 10 9 8 12 12 C 1.39357 * 121.06131 * 0.03784 * 11 10 9 13 13 C 1.36138 * 120.87216 * 359.96259 * 12 11 10 14 14 C 1.40420 * 119.61475 * 0.02562 * 13 12 11 15 15 C 1.36578 * 120.03216 * 269.72485 * 6 5 4 16 16 C 1.34954 * 111.12451 * 0.02562 * 4 3 2 17 17 O 1.21298 * 127.49784 * 179.97438 * 16 4 3 18 18 C 1.51438 * 126.41719 * 180.02562 * 2 1 3 19 19 H 1.09001 * 110.73997 * 298.52451 * 18 2 1 20 20 C 1.52998 * 110.61307 * 61.43492 * 18 2 1 21 21 C 1.50696 * 109.47662 * 180.58135 * 20 18 2 22 22 H 1.08000 * 119.99535 * 359.97438 * 21 20 18 23 23 C 1.37878 * 120.00318 * 180.02562 * 21 20 18 24 24 N 1.31506 * 119.99651 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00028 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47035 * 59.99814 * 25 23 21 27 27 H 1.48495 * 109.47421 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47169 * 299.99882 * 25 23 21 29 29 H 1.08998 * 109.46918 * 269.93727 * 1 2 3 30 30 H 1.08998 * 109.47250 * 29.94367 * 1 2 3 31 31 H 1.09004 * 109.47256 * 149.94524 * 1 2 3 32 32 H 1.08997 * 109.46885 * 29.69970 * 5 4 3 33 33 H 1.08997 * 109.47067 * 149.70311 * 5 4 3 34 34 H 1.07996 * 119.12877 * 359.97397 * 7 6 5 35 35 H 1.08002 * 120.12554 * 359.95729 * 10 9 8 36 36 H 1.07999 * 119.46656 * 180.02562 * 11 10 9 37 37 H 1.08001 * 119.56086 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.19058 * 179.97438 * 13 12 11 39 39 H 1.07999 * 120.91978 * 0.02562 * 15 6 5 40 40 H 1.09000 * 109.46790 * 300.58433 * 20 18 2 41 41 H 1.09008 * 109.46914 * 60.58039 * 20 18 2 42 42 H 0.97006 * 119.99941 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7076 -0.0006 5 6 4.7021 1.6938 0.0049 6 6 5.0796 2.0333 -1.4140 7 6 4.4422 3.0825 -2.0731 8 7 4.7443 3.4070 -3.3068 9 6 5.6820 2.7430 -3.9902 10 6 6.0022 3.0959 -5.3129 11 6 6.9617 2.4020 -5.9835 12 6 7.6360 1.3419 -5.3806 13 6 7.3534 0.9712 -4.1016 14 6 6.3691 1.6650 -3.3794 15 6 6.0506 1.3165 -2.0532 16 6 3.8035 -0.6292 -0.0016 17 8 4.8579 -1.2288 -0.0027 18 6 2.4060 -1.2186 -0.0005 19 1 2.2435 -1.8186 0.8948 20 6 2.1748 -2.0580 -1.2586 21 6 3.0705 -3.2695 -1.2261 22 1 3.7383 -3.4249 -0.3916 23 6 3.0382 -4.1788 -2.2620 24 7 2.2262 -3.9886 -3.2787 25 14 4.1491 -5.6800 -2.2218 26 1 3.8375 -6.4944 -1.0197 27 1 3.9246 -6.4948 -3.4428 28 1 5.5680 -5.2447 -2.1707 29 1 -0.3633 -0.0011 1.0277 30 1 -0.3634 0.8905 -0.5129 31 1 -0.3634 -0.8895 -0.5147 32 1 4.3695 2.5960 0.5182 33 1 5.5677 1.2798 0.5220 34 1 3.6791 3.6432 -1.5539 35 1 5.4884 3.9144 -5.7951 36 1 7.2043 2.6773 -6.9992 37 1 8.3930 0.8076 -5.9354 38 1 7.8825 0.1476 -3.6453 39 1 6.5577 0.5028 -1.5561 40 1 1.1332 -2.3771 -1.2961 41 1 2.4037 -1.4605 -2.1412 42 1 2.2037 -4.6282 -4.0077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601944105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:27 Heat of formation + Delta-G solvation = 68.518018 kcal Electronic energy + Delta-G solvation = -26631.682181 eV Core-core repulsion = 22963.734671 eV Total energy + Delta-G solvation = -3667.947510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.01215 -40.51629 -37.29506 -36.81219 -34.77950 -33.45622 -32.68804 -31.03119 -30.38474 -30.11613 -28.37810 -26.48579 -25.28371 -24.19639 -22.80379 -22.17651 -21.90660 -20.11386 -19.04576 -18.04684 -17.27444 -16.81460 -16.27163 -16.13068 -15.49860 -14.81730 -14.59501 -14.51392 -14.39795 -14.18452 -13.94191 -13.66190 -13.30990 -13.12422 -13.01617 -12.92969 -12.36667 -12.29016 -12.03458 -11.76643 -11.70411 -11.55492 -11.44803 -11.38878 -11.14298 -10.84827 -10.64674 -10.46539 -10.22180 -9.57748 -9.51138 -9.42070 -8.84620 -8.67496 -8.38438 -8.26890 -8.13953 -6.04293 -4.05703 0.41647 0.79392 2.00960 2.15121 2.68963 3.11797 3.19599 3.34520 3.37766 3.43109 4.15292 4.30634 4.40738 4.44866 4.61073 4.69997 4.71538 4.82580 4.93452 5.03966 5.14505 5.23742 5.31819 5.33317 5.45903 5.51209 5.56345 5.71206 5.81667 5.88240 5.94226 5.96929 6.03984 6.11471 6.14385 6.32919 6.35744 6.43105 6.57232 6.60569 6.81042 6.84688 7.39549 7.45341 7.93589 7.93903 8.15112 8.27126 8.49998 8.99788 9.58696 11.06960 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009501 B = 0.004896 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.500995 B = 5717.393497 C = 7507.913557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.103 3.897 3 N -0.258 5.258 4 N -0.481 5.481 5 C 0.190 3.810 6 C -0.168 4.168 7 C 0.158 3.842 8 N -0.480 5.480 9 C 0.129 3.871 10 C -0.098 4.098 11 C -0.100 4.100 12 C -0.124 4.124 13 C -0.086 4.086 14 C -0.104 4.104 15 C -0.028 4.028 16 C 0.512 3.488 17 O -0.486 6.486 18 C -0.132 4.132 19 H 0.121 0.879 20 C 0.056 3.944 21 C -0.516 4.516 22 H 0.065 0.935 23 C 0.060 3.940 24 N -0.897 5.897 25 Si 0.894 3.106 26 H -0.275 1.275 27 H -0.288 1.288 28 H -0.276 1.276 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.160 0.840 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.143 0.857 40 H 0.037 0.963 41 H 0.018 0.982 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.109 14.189 2.109 14.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 N -0.064 5.064 4 N -0.301 5.301 5 C 0.068 3.932 6 C -0.171 4.171 7 C -0.015 4.015 8 N -0.188 5.188 9 C 0.008 3.992 10 C -0.117 4.117 11 C -0.120 4.120 12 C -0.142 4.142 13 C -0.105 4.105 14 C -0.106 4.106 15 C -0.054 4.054 16 C 0.300 3.700 17 O -0.356 6.356 18 C -0.156 4.156 19 H 0.139 0.861 20 C 0.018 3.982 21 C -0.554 4.554 22 H 0.083 0.917 23 C -0.141 4.141 24 N -0.536 5.536 25 Si 0.722 3.278 26 H -0.201 1.201 27 H -0.213 1.213 28 H -0.202 1.202 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.177 0.823 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.056 0.944 41 H 0.036 0.964 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.525 15.535 1.437 16.244 hybrid contribution 1.114 -2.411 0.215 2.665 sum 5.639 13.124 1.653 14.380 Atomic orbital electron populations 1.20323 0.85355 1.04450 1.03294 1.25440 0.97291 0.91861 0.94340 1.74486 0.88901 1.26908 1.16120 1.49842 1.02524 1.06092 1.71685 1.20096 0.88539 0.92665 0.91942 1.20957 0.98565 0.98527 0.99058 1.22841 0.95613 0.93087 0.89989 1.68068 1.14169 1.28578 1.07957 1.18921 0.93065 0.92509 0.94701 1.20767 0.97988 1.00549 0.92347 1.20894 0.95738 0.95380 0.99983 1.20899 1.00451 0.97594 0.95241 1.21070 0.96066 0.98596 0.94759 1.18863 0.98828 0.97754 0.95132 1.21557 0.94699 0.96424 0.92742 1.21434 0.92055 0.81811 0.74651 1.90692 1.31173 1.65829 1.47865 1.22056 0.90734 0.96505 1.06291 0.86112 1.18880 0.98543 0.93216 0.87577 1.21143 1.22009 1.05902 1.06367 0.91684 1.24947 0.95591 0.98294 0.95288 1.69943 1.37720 1.36711 1.09257 0.86609 0.81373 0.82550 0.77261 1.20098 1.21348 1.20186 0.89884 0.90383 0.89034 0.88452 0.88547 0.82333 0.84870 0.85416 0.85547 0.85100 0.83920 0.94447 0.96401 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.49 36.01 0.38 -0.54 16 2 C 0.10 1.71 6.93 -78.73 -0.55 1.16 16 3 N -0.26 -4.34 12.02 35.53 0.43 -3.91 16 4 N -0.48 -8.52 3.52 -61.06 -0.22 -8.74 16 5 C 0.19 2.67 6.36 -5.19 -0.03 2.64 16 6 C -0.17 -2.54 5.45 -104.81 -0.57 -3.11 16 7 C 0.16 2.34 10.82 -17.46 -0.19 2.15 16 8 N -0.48 -7.79 10.34 -10.98 -0.11 -7.90 16 9 C 0.13 2.07 6.60 -84.86 -0.56 1.51 16 10 C -0.10 -1.31 9.98 -39.47 -0.39 -1.70 16 11 C -0.10 -1.15 9.94 -39.94 -0.40 -1.54 16 12 C -0.12 -1.47 9.95 -39.92 -0.40 -1.87 16 13 C -0.09 -1.19 9.78 -39.52 -0.39 -1.58 16 14 C -0.10 -1.65 5.74 -106.80 -0.61 -2.27 16 15 C -0.03 -0.44 9.54 -39.22 -0.37 -0.82 16 16 C 0.51 10.88 7.56 -10.43 -0.08 10.80 16 17 O -0.49 -11.64 16.61 5.54 0.09 -11.54 16 18 C -0.13 -2.68 3.01 -92.08 -0.28 -2.96 16 19 H 0.12 2.31 8.14 -51.93 -0.42 1.88 16 20 C 0.06 1.40 4.50 -27.89 -0.13 1.27 16 21 C -0.52 -14.51 8.36 -34.44 -0.29 -14.80 16 22 H 0.06 1.86 7.05 -52.49 -0.37 1.49 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 24 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 25 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.14 7.56 -51.93 -0.39 0.74 16 32 H 0.10 1.08 8.09 -51.93 -0.42 0.66 16 33 H 0.10 1.27 7.98 -51.93 -0.41 0.86 16 34 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 35 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 39 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.04 0.93 7.58 -51.93 -0.39 0.53 16 41 H 0.02 0.50 8.14 -51.92 -0.42 0.07 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -34.72 364.61 -8.90 -43.62 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.35 Total: 1.78 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -4.95 Total: -10.02 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.83 Total: -46.51 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.72 -8.90 -43.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601944105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.137 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds