Wall clock time and date at job start Tue Mar 31 2020 15:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.27569 * 126.41360 * 2 1 4 4 N 1.39149 * 113.16144 * 180.02562 * 3 2 1 5 5 C 1.46506 * 124.43713 * 180.26721 * 4 3 2 6 6 C 1.50705 * 109.46977 * 269.70214 * 5 4 3 7 7 C 1.39333 * 120.02948 * 90.00036 * 6 5 4 8 8 N 1.31088 * 121.74362 * 179.97438 * 7 6 5 9 9 C 1.33680 * 121.32054 * 359.97194 * 8 7 6 10 10 C 1.40597 * 121.06974 * 180.02562 * 9 8 7 11 11 C 1.36077 * 119.74948 * 179.97438 * 10 9 8 12 12 C 1.39357 * 121.06131 * 0.03784 * 11 10 9 13 13 C 1.36138 * 120.87216 * 359.96259 * 12 11 10 14 14 C 1.40420 * 119.61475 * 0.02562 * 13 12 11 15 15 C 1.36578 * 120.03216 * 269.72485 * 6 5 4 16 16 C 1.34954 * 111.12451 * 0.02562 * 4 3 2 17 17 O 1.21298 * 127.49784 * 179.97438 * 16 4 3 18 18 C 1.51438 * 126.41719 * 180.02562 * 2 1 3 19 19 H 1.09001 * 110.73997 * 298.52451 * 18 2 1 20 20 C 1.52998 * 110.61307 * 61.43492 * 18 2 1 21 21 C 1.50696 * 109.47662 * 180.58135 * 20 18 2 22 22 H 1.08000 * 119.99535 * 359.97438 * 21 20 18 23 23 C 1.37878 * 120.00318 * 180.02562 * 21 20 18 24 24 N 1.31506 * 119.99651 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00028 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47035 * 59.99814 * 25 23 21 27 27 H 1.48495 * 109.47421 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.47169 * 299.99882 * 25 23 21 29 29 H 1.08998 * 109.46918 * 269.93727 * 1 2 3 30 30 H 1.08998 * 109.47250 * 29.94367 * 1 2 3 31 31 H 1.09004 * 109.47256 * 149.94524 * 1 2 3 32 32 H 1.08997 * 109.46885 * 29.69970 * 5 4 3 33 33 H 1.08997 * 109.47067 * 149.70311 * 5 4 3 34 34 H 1.07996 * 119.12877 * 359.97397 * 7 6 5 35 35 H 1.08002 * 120.12554 * 359.95729 * 10 9 8 36 36 H 1.07999 * 119.46656 * 180.02562 * 11 10 9 37 37 H 1.08001 * 119.56086 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.19058 * 179.97438 * 13 12 11 39 39 H 1.07999 * 120.91978 * 0.02562 * 15 6 5 40 40 H 1.09000 * 109.46790 * 300.58433 * 20 18 2 41 41 H 1.09008 * 109.46914 * 60.58039 * 20 18 2 42 42 H 0.97006 * 119.99941 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7076 -0.0006 5 6 4.7021 1.6938 0.0049 6 6 5.0796 2.0333 -1.4140 7 6 4.4422 3.0825 -2.0731 8 7 4.7443 3.4070 -3.3068 9 6 5.6820 2.7430 -3.9902 10 6 6.0022 3.0959 -5.3129 11 6 6.9617 2.4020 -5.9835 12 6 7.6360 1.3419 -5.3806 13 6 7.3534 0.9712 -4.1016 14 6 6.3691 1.6650 -3.3794 15 6 6.0506 1.3165 -2.0532 16 6 3.8035 -0.6292 -0.0016 17 8 4.8579 -1.2288 -0.0027 18 6 2.4060 -1.2186 -0.0005 19 1 2.2435 -1.8186 0.8948 20 6 2.1748 -2.0580 -1.2586 21 6 3.0705 -3.2695 -1.2261 22 1 3.7383 -3.4249 -0.3916 23 6 3.0382 -4.1788 -2.2620 24 7 2.2262 -3.9886 -3.2787 25 14 4.1491 -5.6800 -2.2218 26 1 3.8375 -6.4944 -1.0197 27 1 3.9246 -6.4948 -3.4428 28 1 5.5680 -5.2447 -2.1707 29 1 -0.3633 -0.0011 1.0277 30 1 -0.3634 0.8905 -0.5129 31 1 -0.3634 -0.8895 -0.5147 32 1 4.3695 2.5960 0.5182 33 1 5.5677 1.2798 0.5220 34 1 3.6791 3.6432 -1.5539 35 1 5.4884 3.9144 -5.7951 36 1 7.2043 2.6773 -6.9992 37 1 8.3930 0.8076 -5.9354 38 1 7.8825 0.1476 -3.6453 39 1 6.5577 0.5028 -1.5561 40 1 1.1332 -2.3771 -1.2961 41 1 2.4037 -1.4605 -2.1412 42 1 2.2037 -4.6282 -4.0077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601944105.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:27 Heat of formation + Delta-G solvation = 47.484865 kcal Electronic energy + Delta-G solvation = -26632.594247 eV Core-core repulsion = 22963.734671 eV Total energy + Delta-G solvation = -3668.859576 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.37363 -41.75934 -38.44437 -38.35606 -36.19349 -35.20036 -34.10240 -32.39016 -31.98805 -31.17606 -29.49192 -28.21333 -26.74979 -25.30966 -24.46965 -23.45677 -23.09534 -21.67488 -20.51562 -19.13896 -18.54766 -18.34615 -17.90417 -17.51556 -16.99534 -16.54693 -16.14219 -15.81412 -15.56367 -15.42405 -15.27323 -14.89608 -14.58929 -14.36157 -14.30170 -14.13002 -14.10419 -13.52902 -13.45038 -13.31396 -13.07997 -12.85645 -12.79173 -12.76165 -12.63499 -12.48412 -12.27168 -11.99016 -11.65452 -11.59517 -11.28162 -10.66214 -10.66011 -10.44210 -9.81222 -9.59033 -9.31528 -8.24848 -6.32544 -0.69171 -0.31331 0.70547 0.87424 1.34327 1.37314 1.42428 1.45517 1.66021 1.98822 2.37454 2.99869 3.03477 3.10993 3.23753 3.31690 3.50617 3.60191 3.68590 3.85421 3.94535 4.00679 4.13914 4.27039 4.30899 4.32396 4.44312 4.50408 4.62011 4.73224 4.76030 4.90943 4.94636 4.96394 5.03890 5.11461 5.18387 5.31740 5.32275 5.34795 5.40528 5.49091 5.58417 5.72665 5.83552 6.12224 6.71248 6.77963 6.78274 6.92641 7.35337 8.86259 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009501 B = 0.004896 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.500995 B = 5717.393497 C = 7507.913557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.115 3.885 3 N -0.256 5.256 4 N -0.475 5.475 5 C 0.186 3.814 6 C -0.172 4.172 7 C 0.151 3.849 8 N -0.495 5.495 9 C 0.103 3.897 10 C -0.113 4.113 11 C -0.089 4.089 12 C -0.115 4.115 13 C -0.111 4.111 14 C -0.126 4.126 15 C -0.047 4.047 16 C 0.499 3.501 17 O -0.525 6.525 18 C -0.138 4.138 19 H 0.133 0.867 20 C 0.069 3.931 21 C -0.530 4.530 22 H 0.055 0.945 23 C 0.009 3.991 24 N -0.928 5.928 25 Si 0.953 3.047 26 H -0.261 1.261 27 H -0.278 1.278 28 H -0.282 1.282 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.134 0.866 33 H 0.101 0.899 34 H 0.184 0.816 35 H 0.148 0.852 36 H 0.168 0.832 37 H 0.159 0.841 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.037 0.963 41 H -0.022 1.022 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 14.988 1.859 15.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 N -0.062 5.062 4 N -0.294 5.294 5 C 0.065 3.935 6 C -0.175 4.175 7 C -0.022 4.022 8 N -0.203 5.203 9 C -0.017 4.017 10 C -0.131 4.131 11 C -0.109 4.109 12 C -0.133 4.133 13 C -0.130 4.130 14 C -0.128 4.128 15 C -0.074 4.074 16 C 0.287 3.713 17 O -0.399 6.399 18 C -0.161 4.161 19 H 0.150 0.850 20 C 0.031 3.969 21 C -0.568 4.568 22 H 0.073 0.927 23 C -0.189 4.189 24 N -0.568 5.568 25 Si 0.778 3.222 26 H -0.185 1.185 27 H -0.203 1.203 28 H -0.208 1.208 29 H 0.136 0.864 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.152 0.848 33 H 0.119 0.881 34 H 0.201 0.799 35 H 0.166 0.834 36 H 0.185 0.815 37 H 0.177 0.823 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.055 0.945 41 H -0.004 1.004 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.235 16.370 1.199 16.952 hybrid contribution 1.225 -2.622 0.221 2.903 sum 5.460 13.748 1.420 14.861 Atomic orbital electron populations 1.20550 0.81871 1.05089 1.05734 1.25976 0.98976 0.89519 0.93262 1.74553 0.88247 1.26494 1.16912 1.49941 1.03654 1.05508 1.70328 1.20413 0.87938 0.93224 0.91894 1.21050 0.98396 0.98619 0.99447 1.23211 0.95947 0.93135 0.89868 1.68089 1.14602 1.29045 1.08559 1.19351 0.93497 0.92915 0.95983 1.21080 0.98933 1.01527 0.91581 1.21366 0.94064 0.94067 1.01384 1.21353 1.00283 0.97238 0.94392 1.21304 0.96438 0.99278 0.95998 1.19121 0.99827 0.98488 0.95350 1.21658 0.95611 0.96695 0.93437 1.21612 0.91804 0.83256 0.74584 1.90652 1.32357 1.66991 1.49913 1.21951 0.91877 0.97862 1.04444 0.85002 1.18562 0.97709 0.92355 0.88256 1.21442 1.22152 1.07087 1.06096 0.92666 1.25744 0.96952 1.01191 0.95013 1.70041 1.39095 1.37802 1.09850 0.85685 0.78963 0.79436 0.78124 1.18548 1.20274 1.20798 0.86384 0.88521 0.89486 0.84801 0.88109 0.79945 0.83380 0.81485 0.82314 0.84620 0.84930 0.94526 1.00379 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.60 10.49 71.24 0.75 -0.85 16 2 C 0.12 3.66 6.93 46.83 0.32 3.99 16 3 N -0.26 -8.27 12.02 -40.85 -0.49 -8.76 16 4 N -0.48 -16.77 3.52 -465.38 -1.64 -18.41 16 5 C 0.19 5.18 6.36 85.63 0.55 5.73 16 6 C -0.17 -5.31 5.45 -19.99 -0.11 -5.42 16 7 C 0.15 4.47 10.82 85.07 0.92 5.39 16 8 N -0.50 -16.13 10.34 -188.64 -1.95 -18.08 16 9 C 0.10 3.34 6.60 40.29 0.27 3.60 16 10 C -0.11 -2.90 9.98 22.34 0.22 -2.68 16 11 C -0.09 -1.84 9.94 22.04 0.22 -1.62 16 12 C -0.12 -2.53 9.95 22.05 0.22 -2.31 16 13 C -0.11 -3.13 9.78 22.31 0.22 -2.91 16 14 C -0.13 -4.16 5.74 -21.28 -0.12 -4.28 16 15 C -0.05 -1.60 9.54 22.50 0.21 -1.39 16 16 C 0.50 21.69 7.56 87.94 0.67 22.35 16 17 O -0.53 -26.23 16.61 -3.08 -0.05 -26.28 16 18 C -0.14 -5.63 3.01 -11.74 -0.04 -5.66 16 19 H 0.13 5.03 8.14 -2.39 -0.02 5.01 16 20 C 0.07 3.56 4.50 29.85 0.13 3.69 16 21 C -0.53 -30.53 8.36 25.60 0.21 -30.32 16 22 H 0.06 3.24 7.05 -2.91 -0.02 3.22 16 23 C 0.01 0.54 5.46 84.66 0.46 1.00 16 24 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 25 Si 0.95 45.95 29.54 68.60 2.03 47.98 16 26 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 29 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.09 2.00 7.56 -2.38 -0.02 1.99 16 32 H 0.13 2.70 8.09 -2.39 -0.02 2.69 16 33 H 0.10 2.71 7.98 -2.39 -0.02 2.69 16 34 H 0.18 4.27 8.06 -2.91 -0.02 4.24 16 35 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 36 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 37 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 38 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 39 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.04 1.85 7.58 -2.39 -0.02 1.83 16 41 H -0.02 -1.31 8.14 -2.38 -0.02 -1.32 16 42 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -77.86 364.61 4.32 -73.54 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 1.04 Total: 17.49 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 5.11 Total: -11.68 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -3.80 Total: -101.04 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.05 Total: -26.28 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -77.86 4.32 -73.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601944105.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.022 kcal (2) G-P(sol) polarization free energy of solvation -77.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds