Wall clock time and date at job start Tue Mar 31 2020 15:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.27567 * 126.41536 * 2 1 4 4 N 1.39151 * 113.16277 * 179.97438 * 3 2 1 5 5 C 1.46503 * 124.43790 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47180 * 270.02962 * 5 4 3 7 7 C 1.36102 * 120.12917 * 259.99799 * 6 5 4 8 8 C 1.39307 * 121.07018 * 179.97438 * 7 6 5 9 9 C 1.36174 * 120.86814 * 359.97438 * 8 7 6 10 10 C 1.40389 * 119.61671 * 0.02637 * 9 8 7 11 11 C 1.40781 * 121.38723 * 180.02562 * 10 9 8 12 12 C 1.36575 * 118.14658 * 179.97438 * 11 10 9 13 13 C 1.39333 * 119.94382 * 0.02562 * 12 11 10 14 14 N 1.31084 * 121.75167 * 359.97438 * 13 12 11 15 15 C 1.33681 * 121.32071 * 0.02562 * 14 13 12 16 16 C 1.34956 * 111.12341 * 0.27151 * 4 3 2 17 17 O 1.21296 * 127.50180 * 179.71069 * 16 4 3 18 18 C 1.51441 * 126.41545 * 179.97438 * 2 1 3 19 19 H 1.09002 * 110.60539 * 298.70616 * 18 2 1 20 20 C 1.52999 * 110.61020 * 61.52353 * 18 2 1 21 21 C 1.50700 * 109.47102 * 184.99916 * 20 18 2 22 22 H 1.07995 * 120.00087 * 0.02562 * 21 20 18 23 23 C 1.37875 * 119.99453 * 180.02562 * 21 20 18 24 24 N 1.31516 * 119.99755 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00503 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47109 * 90.00045 * 25 23 21 27 27 H 1.48501 * 109.47256 * 209.99870 * 25 23 21 28 28 H 1.48497 * 109.46936 * 330.00046 * 25 23 21 29 29 H 1.08996 * 109.47257 * 0.02784 * 1 2 3 30 30 H 1.09005 * 109.46794 * 120.02631 * 1 2 3 31 31 H 1.09005 * 109.47061 * 240.02537 * 1 2 3 32 32 H 1.08993 * 109.47225 * 150.03067 * 5 4 3 33 33 H 1.08998 * 109.47031 * 30.02986 * 5 4 3 34 34 H 1.08000 * 119.46297 * 359.96019 * 7 6 5 35 35 H 1.08001 * 119.57251 * 180.02562 * 8 7 6 36 36 H 1.08004 * 120.19139 * 179.97438 * 9 8 7 37 37 H 1.07995 * 120.92845 * 0.02562 * 11 10 9 38 38 H 1.07996 * 120.02738 * 180.02562 * 12 11 10 39 39 H 1.07999 * 119.12659 * 180.02562 * 13 12 11 40 40 H 1.09002 * 109.46933 * 304.99810 * 20 18 2 41 41 H 1.08998 * 109.47067 * 64.99653 * 20 18 2 42 42 H 0.97002 * 120.00326 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7076 0.0006 5 6 4.7022 1.6937 0.0002 6 6 5.0735 2.0314 -1.4208 7 6 6.1648 1.4570 -1.9967 8 6 6.5256 1.7546 -3.3089 9 6 5.7947 2.6298 -4.0531 10 6 4.6626 3.2413 -3.4915 11 6 3.8798 4.1513 -4.2273 12 6 2.7923 4.7069 -3.6159 13 6 2.4857 4.3680 -2.2996 14 7 3.2168 3.5203 -1.6174 15 6 4.2942 2.9410 -2.1565 16 6 3.8036 -0.6292 -0.0050 17 8 4.8579 -1.2289 -0.0109 18 6 2.4060 -1.2187 0.0005 19 1 2.2394 -1.8179 0.8957 20 6 2.1762 -2.0580 -1.2579 21 6 2.9909 -3.3231 -1.1736 22 1 3.6101 -3.5099 -0.3088 23 6 2.9454 -4.2418 -2.2007 24 7 3.6559 -5.3461 -2.1270 25 14 1.8737 -3.9189 -3.6961 26 1 2.6604 -3.1850 -4.7197 27 1 1.4100 -5.2115 -4.2612 28 1 0.6988 -3.1035 -3.2963 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5143 -0.8898 31 1 -0.3633 -0.5135 0.8903 32 1 5.5699 1.2804 0.5140 33 1 4.3718 2.5966 0.5137 34 1 6.7607 0.7594 -1.4270 35 1 7.3961 1.2844 -3.7420 36 1 6.0846 2.8529 -5.0693 37 1 4.1318 4.4023 -5.2470 38 1 2.1705 5.4083 -4.1522 39 1 1.6224 4.8149 -1.8291 40 1 1.1191 -2.3112 -1.3377 41 1 2.4805 -1.4877 -2.1355 42 1 3.6243 -5.9923 -2.8497 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603921008.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:34 Heat of formation + Delta-G solvation = 77.174168 kcal Electronic energy + Delta-G solvation = -27116.776009 eV Core-core repulsion = 23449.203858 eV Total energy + Delta-G solvation = -3667.572151 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.03338 -40.47993 -37.25694 -36.71763 -34.85888 -33.42420 -32.51173 -30.82889 -30.56819 -30.52107 -28.31211 -26.64569 -25.21032 -24.11924 -23.60754 -22.01739 -21.03350 -19.99491 -18.91266 -18.26125 -17.14681 -16.87982 -16.68762 -16.05102 -15.57617 -14.84183 -14.61464 -14.37347 -14.25024 -14.21022 -14.07722 -13.65023 -13.25755 -13.12081 -13.01395 -12.97923 -12.51575 -12.26698 -12.04927 -11.84746 -11.77585 -11.74055 -11.47725 -11.24625 -11.17173 -10.81442 -10.54290 -10.47153 -10.02803 -9.60660 -9.42381 -9.37455 -8.78914 -8.76943 -8.51961 -8.26615 -8.03914 -6.01147 -3.99362 0.33361 0.81558 1.89851 2.23563 2.82092 3.11273 3.28581 3.29361 3.36605 3.37251 4.12569 4.30970 4.42537 4.44290 4.51797 4.65957 4.74608 4.79474 4.85553 5.04162 5.11734 5.29150 5.31320 5.34038 5.41668 5.48671 5.66950 5.73662 5.75201 5.84327 5.91973 5.97287 5.99959 6.02948 6.07107 6.29862 6.36127 6.42786 6.47626 6.66655 6.84111 6.88353 6.97903 7.10719 7.69813 7.96086 8.28279 8.53758 8.58470 9.08904 9.58545 11.12289 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011614 B = 0.004741 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.363118 B = 5904.811378 C = 6319.417607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.079 3.921 3 N -0.226 5.226 4 N -0.474 5.474 5 C 0.194 3.806 6 C -0.087 4.087 7 C -0.078 4.078 8 C -0.111 4.111 9 C -0.098 4.098 10 C -0.107 4.107 11 C -0.061 4.061 12 C -0.179 4.179 13 C 0.127 3.873 14 N -0.446 5.446 15 C 0.143 3.857 16 C 0.508 3.492 17 O -0.479 6.479 18 C -0.121 4.121 19 H 0.125 0.875 20 C 0.020 3.980 21 C -0.514 4.514 22 H 0.082 0.918 23 C 0.071 3.929 24 N -0.898 5.898 25 Si 0.871 3.129 26 H -0.279 1.279 27 H -0.285 1.285 28 H -0.265 1.265 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.156 0.844 40 H 0.035 0.965 41 H 0.010 0.990 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 21.430 -1.449 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 N -0.032 5.032 4 N -0.295 5.295 5 C 0.072 3.928 6 C -0.089 4.089 7 C -0.099 4.099 8 C -0.129 4.129 9 C -0.117 4.117 10 C -0.109 4.109 11 C -0.087 4.087 12 C -0.199 4.199 13 C -0.047 4.047 14 N -0.153 5.153 15 C 0.022 3.978 16 C 0.295 3.705 17 O -0.348 6.348 18 C -0.145 4.145 19 H 0.143 0.857 20 C -0.018 4.018 21 C -0.552 4.552 22 H 0.100 0.900 23 C -0.130 4.130 24 N -0.536 5.536 25 Si 0.698 3.302 26 H -0.205 1.205 27 H -0.211 1.211 28 H -0.190 1.190 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.173 0.827 40 H 0.053 0.947 41 H 0.028 0.972 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.440 21.698 -0.617 21.755 hybrid contribution -0.138 -0.561 -2.065 2.144 sum -1.578 21.138 -2.681 21.366 Atomic orbital electron populations 1.20247 0.85638 1.03384 1.03744 1.25427 0.97279 0.91925 0.96766 1.74693 0.88781 1.26100 1.13656 1.49788 1.02622 1.05792 1.71257 1.20030 0.88101 0.92672 0.91989 1.19923 0.94931 0.96517 0.97509 1.21001 0.96299 0.97309 0.95252 1.20950 1.00195 0.97569 0.94222 1.20987 0.94099 0.96902 0.99717 1.18849 0.97553 0.99396 0.95110 1.21405 0.93835 0.94038 0.99432 1.21868 0.98751 1.02283 0.97030 1.22959 0.97713 0.92704 0.91275 1.68121 1.03666 1.06628 1.36904 1.18664 0.92799 0.95802 0.90585 1.21427 0.91952 0.81949 0.75166 1.90736 1.30987 1.65753 1.47300 1.21784 0.91208 0.96208 1.05307 0.85728 1.19320 0.98272 0.94845 0.89385 1.21047 1.26444 1.00877 1.06819 0.90016 1.24933 0.95276 0.94979 0.97809 1.69904 1.40881 1.09780 1.33071 0.86923 0.81621 0.77753 0.83879 1.20496 1.21114 1.18962 0.90648 0.89708 0.89760 0.88918 0.88176 0.84719 0.85250 0.85366 0.84747 0.84875 0.82651 0.94737 0.97151 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.47 36.01 0.38 -0.51 16 2 C 0.08 1.36 6.93 -78.73 -0.55 0.81 16 3 N -0.23 -4.05 12.02 35.53 0.43 -3.63 16 4 N -0.47 -9.03 3.52 -61.06 -0.22 -9.24 16 5 C 0.19 3.12 6.04 -5.19 -0.03 3.09 16 6 C -0.09 -1.40 5.47 -104.51 -0.57 -1.97 16 7 C -0.08 -1.18 9.56 -39.95 -0.38 -1.56 16 8 C -0.11 -1.46 9.95 -39.93 -0.40 -1.86 16 9 C -0.10 -1.21 9.78 -39.51 -0.39 -1.60 16 10 C -0.11 -1.46 5.74 -106.80 -0.61 -2.08 16 11 C -0.06 -0.66 9.90 -39.22 -0.39 -1.05 16 12 C -0.18 -1.77 10.03 -39.77 -0.40 -2.17 16 13 C 0.13 1.47 11.15 -17.46 -0.19 1.28 16 14 N -0.45 -6.68 9.60 -10.97 -0.11 -6.78 16 15 C 0.14 2.25 6.59 -84.86 -0.56 1.69 16 16 C 0.51 11.32 7.58 -10.42 -0.08 11.24 16 17 O -0.48 -12.21 17.02 5.54 0.09 -12.12 16 18 C -0.12 -2.53 2.98 -92.08 -0.27 -2.80 16 19 H 0.13 2.49 8.14 -51.93 -0.42 2.07 16 20 C 0.02 0.49 3.55 -27.88 -0.10 0.39 16 21 C -0.51 -14.97 8.98 -34.44 -0.31 -15.28 16 22 H 0.08 2.63 7.68 -52.49 -0.40 2.23 16 23 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 24 N -0.90 -28.27 13.96 55.43 0.77 -27.49 16 25 Si 0.87 21.92 27.47 -169.99 -4.67 17.26 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.38 7.87 -51.93 -0.41 0.97 16 33 H 0.10 1.48 7.87 -51.93 -0.41 1.07 16 34 H 0.13 1.98 8.00 -52.49 -0.42 1.56 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.03 0.78 7.08 -51.93 -0.37 0.42 16 41 H 0.01 0.26 7.54 -51.93 -0.39 -0.13 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -36.79 361.62 -8.56 -45.36 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.37 Total: 1.55 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -4.95 Total: -10.35 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.88 Total: -47.14 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.79 -8.56 -45.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603921008.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.529 kcal (2) G-P(sol) polarization free energy of solvation -36.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds