Wall clock time and date at job start Tue Mar 31 2020 14:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31118 * 119.12259 * 2 1 4 4 C 1.33651 * 121.32093 * 179.97438 * 3 2 1 5 5 C 1.40605 * 121.08434 * 179.97438 * 4 3 2 6 6 C 1.36069 * 119.74513 * 180.02562 * 5 4 3 7 7 C 1.39359 * 121.07734 * 0.02562 * 6 5 4 8 8 C 1.36132 * 120.87073 * 359.97438 * 7 6 5 9 9 C 1.40434 * 119.61584 * 0.02562 * 8 7 6 10 10 C 1.40731 * 121.38241 * 179.97438 * 9 8 7 11 11 C 1.50691 * 120.92542 * 0.04433 * 10 9 8 12 12 C 1.36614 * 118.15190 * 180.02562 * 10 9 8 13 13 C 1.50692 * 120.03465 * 179.97438 * 12 10 9 14 14 C 1.50710 * 109.47030 * 270.02266 * 13 12 10 15 15 O 1.21285 * 119.99857 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00032 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00205 * 180.02562 * 16 14 13 18 18 H 1.07997 * 119.99513 * 20.21601 * 17 16 14 19 19 C 1.38942 * 120.00147 * 200.21718 * 17 16 14 20 20 N 1.31417 * 120.00154 * 21.42055 * 19 17 16 21 21 Si 1.86796 * 120.00162 * 201.42404 * 19 17 16 22 22 H 1.48492 * 109.47360 * 59.99862 * 21 19 17 23 23 H 1.48499 * 109.47423 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47016 * 299.99750 * 21 19 17 25 25 C 1.46505 * 119.99844 * 359.97438 * 16 14 13 26 26 C 1.47203 * 109.47009 * 83.95314 * 25 16 14 27 27 N 5.50006 * 46.18656 * 176.05828 * 2 1 3 28 28 H 1.09002 * 109.47198 * 89.99757 * 1 2 3 29 29 H 1.09001 * 109.47048 * 209.99674 * 1 2 3 30 30 H 1.08996 * 109.47013 * 329.99712 * 1 2 3 31 31 H 1.07999 * 120.12401 * 0.02562 * 5 4 3 32 32 H 1.08002 * 119.45903 * 180.02562 * 6 5 4 33 33 H 1.07998 * 119.56738 * 179.70553 * 7 6 5 34 34 H 1.07998 * 120.19505 * 179.97438 * 8 7 6 35 35 H 1.09004 * 109.47024 * 269.99926 * 11 10 9 36 36 H 1.09002 * 109.47423 * 29.99429 * 11 10 9 37 37 H 1.08996 * 109.47831 * 150.00263 * 11 10 9 38 38 H 1.08998 * 109.47363 * 30.01830 * 13 12 10 39 39 H 1.09002 * 109.47520 * 150.02387 * 13 12 10 40 40 H 0.97001 * 120.00012 * 179.97438 * 20 19 17 41 41 H 1.09004 * 109.46984 * 203.95186 * 25 16 14 42 42 H 1.08998 * 109.47471 * 323.95229 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1451 1.1454 0.0000 4 6 3.4806 1.1967 0.0005 5 6 4.1599 2.4278 0.0000 6 6 5.5204 2.4482 0.0000 7 6 6.2576 1.2656 0.0000 8 6 5.6355 0.0547 0.0005 9 6 4.2324 -0.0047 0.0005 10 6 3.5510 -1.2360 0.0005 11 6 4.3071 -2.5395 0.0015 12 6 2.1850 -1.2168 -0.0001 13 6 1.4124 -2.5106 -0.0007 14 6 1.1559 -2.9418 -1.4218 15 8 1.5603 -2.2649 -2.3433 16 7 0.4772 -4.0798 -1.6686 17 6 0.2444 -4.4724 -2.9614 18 1 0.8545 -4.0820 -3.7624 19 6 -0.7766 -5.3724 -3.2409 20 7 -1.7666 -5.5279 -2.3908 21 14 -0.7419 -6.3616 -4.8251 22 1 0.4887 -7.1918 -4.8634 23 1 -1.9359 -7.2425 -4.8849 24 1 -0.7513 -5.4365 -5.9866 25 6 -0.0107 -4.8978 -0.5555 26 6 -1.3025 -4.3694 -0.0877 27 7 -2.3008 -3.9594 0.2728 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 3.6038 3.3536 -0.0005 32 1 6.0374 3.3964 0.0000 33 1 7.3366 1.3102 -0.0048 34 1 6.2175 -0.8550 0.0001 35 1 4.4900 -2.8542 -1.0260 36 1 5.2589 -2.4071 0.5158 37 1 3.7192 -3.3002 0.5151 38 1 1.9899 -3.2789 0.5135 39 1 0.4616 -2.3663 0.5124 40 1 -2.4795 -6.1560 -2.5861 41 1 -0.1389 -5.9273 -0.8900 42 1 0.7110 -4.8683 0.2608 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604544389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:33 Heat of formation + Delta-G solvation = 36.236258 kcal Electronic energy + Delta-G solvation = -26925.019170 eV Core-core repulsion = 23255.671818 eV Total energy + Delta-G solvation = -3669.347352 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.11063 -40.54405 -38.42459 -37.48235 -36.18168 -35.85196 -33.93542 -33.45281 -31.88497 -29.74840 -29.06634 -28.87166 -28.14779 -26.32422 -23.68096 -23.47744 -21.68270 -20.95576 -19.72005 -19.00258 -18.22860 -18.06571 -17.92726 -16.86232 -16.55270 -16.03732 -15.86172 -15.65393 -15.23033 -15.08433 -14.67617 -14.60843 -14.40868 -14.37288 -14.19372 -13.90628 -13.73176 -13.61889 -13.39188 -13.26763 -13.14724 -13.02309 -12.85644 -12.49883 -12.33766 -12.31512 -12.24641 -12.13313 -12.01965 -11.98018 -11.08270 -11.01809 -10.45198 -10.40655 -9.87964 -9.48582 -9.05351 -8.38169 -5.94910 -0.51041 -0.11759 1.06651 1.41598 1.49107 1.57194 1.83183 1.96373 2.10464 2.28437 2.38153 3.02073 3.06039 3.25209 3.26005 3.54013 3.61768 3.67267 3.80440 3.88536 4.04885 4.11292 4.24711 4.32406 4.42316 4.45440 4.48053 4.49785 4.59922 4.66656 4.66959 4.84007 4.86749 4.91126 5.01153 5.11044 5.18863 5.23677 5.25550 5.49747 5.50799 5.57254 5.70954 6.00119 6.08204 6.43081 6.98146 7.05373 7.15653 7.37954 7.96309 8.65166 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.003620 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.485468 B = 7733.424453 C = 8310.712980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.160 3.840 3 N -0.512 5.512 4 C 0.100 3.900 5 C -0.122 4.122 6 C -0.091 4.091 7 C -0.121 4.121 8 C -0.098 4.098 9 C -0.125 4.125 10 C -0.016 4.016 11 C -0.119 4.119 12 C -0.129 4.129 13 C -0.091 4.091 14 C 0.462 3.538 15 O -0.610 6.610 16 N -0.453 5.453 17 C -0.339 4.339 18 H 0.079 0.921 19 C 0.009 3.991 20 N -0.890 5.890 21 Si 0.981 3.019 22 H -0.258 1.258 23 H -0.281 1.281 24 H -0.287 1.287 25 C 0.219 3.781 26 C 0.254 3.746 27 N -0.505 5.505 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.137 0.863 39 H 0.099 0.901 40 H 0.273 0.727 41 H 0.123 0.877 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.258 4.251 9.520 19.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.009 3.991 3 N -0.223 5.223 4 C -0.021 4.021 5 C -0.141 4.141 6 C -0.110 4.110 7 C -0.139 4.139 8 C -0.116 4.116 9 C -0.127 4.127 10 C -0.024 4.024 11 C -0.175 4.175 12 C -0.131 4.131 13 C -0.131 4.131 14 C 0.252 3.748 15 O -0.495 6.495 16 N -0.174 5.174 17 C -0.466 4.466 18 H 0.097 0.903 19 C -0.194 4.194 20 N -0.529 5.529 21 Si 0.806 3.194 22 H -0.182 1.182 23 H -0.206 1.206 24 H -0.213 1.213 25 C 0.093 3.907 26 C -0.063 4.063 27 N -0.186 5.186 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.152 0.848 32 H 0.179 0.821 33 H 0.181 0.819 34 H 0.173 0.827 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.154 0.846 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.141 0.859 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 14.421 5.907 9.598 18.302 hybrid contribution -0.332 -1.164 -1.470 1.904 sum 14.089 4.743 8.128 16.943 Atomic orbital electron populations 1.20774 0.88863 1.04004 1.02443 1.21427 0.97261 0.88295 0.92127 1.67818 1.09522 1.28774 1.16152 1.19358 0.89130 0.94613 0.98990 1.20961 0.95426 0.95605 1.02062 1.21294 0.92727 1.00412 0.96609 1.21335 1.01969 0.91470 0.99089 1.21347 0.91438 1.00406 0.98405 1.18989 0.96287 0.92946 1.04472 1.20356 0.92936 0.96378 0.92699 1.21009 1.00998 0.92029 1.03462 1.19827 0.94405 0.95059 1.03827 1.20718 1.01970 0.95760 0.94654 1.20671 0.82706 0.80371 0.91038 1.90548 1.56303 1.54542 1.48082 1.43751 1.48292 1.19603 1.05705 1.19494 1.16168 1.25922 0.85031 0.90334 1.25816 0.92941 0.98833 1.01766 1.69914 1.08751 1.35256 1.38934 0.85171 0.78146 0.78106 0.77979 1.18246 1.20603 1.21307 1.19101 0.85137 0.96786 0.89696 1.29852 0.95037 0.91768 0.89687 1.80986 1.12441 1.11048 1.14093 0.92163 0.89920 0.89386 0.84793 0.82125 0.81924 0.82682 0.90786 0.88086 0.88873 0.84569 0.88282 0.91655 0.85927 0.83978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.61 9.74 71.24 0.69 -2.92 16 2 C 0.16 5.99 6.78 42.92 0.29 6.28 16 3 N -0.51 -19.31 10.24 -176.76 -1.81 -21.12 16 4 C 0.10 3.36 6.60 40.30 0.27 3.63 16 5 C -0.12 -3.21 9.98 22.34 0.22 -2.99 16 6 C -0.09 -1.70 9.94 22.03 0.22 -1.48 16 7 C -0.12 -2.08 9.95 22.05 0.22 -1.86 16 8 C -0.10 -2.09 9.31 22.31 0.21 -1.88 16 9 C -0.13 -3.74 5.74 -21.28 -0.12 -3.87 16 10 C -0.02 -0.48 5.92 -19.64 -0.12 -0.60 16 11 C -0.12 -2.59 9.19 71.23 0.65 -1.94 16 12 C -0.13 -4.43 4.35 -19.99 -0.09 -4.52 16 13 C -0.09 -2.91 3.62 29.10 0.11 -2.81 16 14 C 0.46 19.85 7.56 87.66 0.66 20.51 16 15 O -0.61 -32.07 15.71 -3.04 -0.05 -32.12 16 16 N -0.45 -19.85 2.60 -645.41 -1.68 -21.52 16 17 C -0.34 -17.07 9.27 84.04 0.78 -16.29 16 18 H 0.08 4.33 7.43 -2.91 -0.02 4.31 16 19 C 0.01 0.43 4.84 84.92 0.41 0.84 16 20 N -0.89 -43.46 9.59 21.66 0.21 -43.25 16 21 Si 0.98 39.40 29.60 68.60 2.03 41.43 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 23 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.29 -12.11 7.11 99.48 0.71 -11.41 16 25 C 0.22 7.69 4.91 84.57 0.42 8.11 16 26 C 0.25 10.36 12.83 89.42 1.15 11.50 16 27 N -0.50 -22.69 18.55 20.03 0.37 -22.31 16 28 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.08 2.70 5.88 -2.39 -0.01 2.68 16 30 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.16 2.37 6.45 -2.91 -0.02 2.35 16 35 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.10 1.52 6.53 -2.39 -0.02 1.50 16 37 H 0.09 1.68 6.01 -2.39 -0.01 1.67 16 38 H 0.14 3.12 5.27 -2.39 -0.01 3.10 16 39 H 0.10 3.08 5.25 -2.39 -0.01 3.07 16 40 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 41 H 0.12 4.42 6.63 -2.38 -0.02 4.41 16 42 H 0.14 3.26 6.69 -2.39 -0.02 3.25 16 Total: -1.00 -74.14 351.18 6.13 -68.01 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 1.08 Total: 21.17 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 5.97 Total: 9.72 kcal Atomic # 7 Polarization: -105.31 SS G_CDS: -2.91 Total: -108.21 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.05 Total: -32.12 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -74.14 6.13 -68.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604544389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.251 kcal (2) G-P(sol) polarization free energy of solvation -74.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds