Wall clock time and date at job start Tue Mar 31 2020 13:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86800 * 120.00363 * 2 1 4 4 H 1.48498 * 109.46988 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46721 * 119.99989 * 3 2 1 6 6 H 1.48501 * 109.46947 * 239.99996 * 3 2 1 7 7 C 1.39018 * 119.99461 * 179.72550 * 2 1 3 8 8 H 1.08002 * 119.99743 * 161.74051 * 7 2 1 9 9 N 1.36886 * 120.00188 * 341.73913 * 7 2 1 10 10 C 1.38204 * 125.62411 * 137.62410 * 9 7 2 11 11 C 1.46896 * 125.43410 * 0.02562 * 10 9 7 12 12 O 1.21665 * 120.00214 * 173.37599 * 11 10 9 13 13 N 1.34784 * 119.99725 * 353.37460 * 11 10 9 14 14 C 1.46496 * 119.99498 * 184.70673 * 13 11 10 15 15 C 1.53000 * 109.46843 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.47387 * 179.97438 * 15 14 13 17 17 C 1.36347 * 125.63421 * 269.69132 * 16 15 14 18 18 C 1.34851 * 108.21451 * 179.82790 * 17 16 15 19 19 C 1.40892 * 107.42172 * 0.42572 * 18 17 16 20 20 C 1.34849 * 107.41162 * 359.73561 * 19 18 17 21 21 C 1.36124 * 109.12990 * 179.82530 * 10 9 7 22 22 C 1.41697 * 107.74508 * 0.43303 * 21 10 9 23 23 C 1.40027 * 133.34574 * 179.76063 * 22 21 10 24 24 C 1.36575 * 119.82961 * 179.97438 * 23 22 21 25 25 C 1.38857 * 120.59758 * 359.97438 * 24 23 22 26 26 C 1.37845 * 120.63827 * 0.02562 * 25 24 23 27 27 C 1.37844 * 125.61714 * 317.93088 * 9 7 2 28 28 H 0.97004 * 120.00622 * 173.97097 * 1 2 3 29 29 H 0.96998 * 119.99793 * 4.70849 * 13 11 10 30 30 H 1.09002 * 109.47227 * 300.00030 * 14 13 11 31 31 H 1.08997 * 109.47672 * 60.00363 * 14 13 11 32 32 H 1.09002 * 109.46951 * 299.99853 * 15 14 13 33 33 H 1.08997 * 109.47430 * 59.99863 * 15 14 13 34 34 H 1.07999 * 125.89102 * 359.96296 * 17 16 15 35 35 H 1.07997 * 126.28846 * 180.16250 * 18 17 16 36 36 H 1.07994 * 126.29243 * 179.74029 * 19 18 17 37 37 H 1.08008 * 125.88467 * 180.02562 * 20 19 18 38 38 H 1.08002 * 126.12511 * 180.16777 * 21 10 9 39 39 H 1.07996 * 120.08364 * 359.96556 * 23 22 21 40 40 H 1.07997 * 119.70408 * 180.02562 * 24 23 22 41 41 H 1.08004 * 119.68603 * 180.02562 * 25 24 23 42 42 H 1.07997 * 120.09879 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 1.2826 2.7464 0.0006 5 1 3.1012 1.6962 1.2125 6 1 3.1013 1.6962 -1.2125 7 6 2.0084 -1.2040 0.0058 8 1 3.0476 -1.2290 -0.2872 9 7 1.3756 -2.3578 0.3828 10 6 1.4986 -3.5844 -0.2420 11 6 2.3318 -3.8605 -1.4199 12 8 2.4622 -5.0025 -1.8186 13 7 2.9518 -2.8486 -2.0589 14 6 3.6979 -3.1092 -3.2924 15 6 4.3002 -1.8015 -3.8100 16 7 5.0469 -2.0621 -5.0432 17 6 6.3696 -2.3843 -5.1178 18 6 6.6902 -2.5510 -6.4170 19 6 5.5251 -2.3136 -7.1728 20 6 4.5355 -2.0167 -6.3062 21 6 0.7279 -4.4969 0.4110 22 6 0.0834 -3.8301 1.4824 23 6 -0.8142 -4.2469 2.4730 24 6 -1.2734 -3.3497 3.3946 25 6 -0.8580 -2.0252 3.3596 26 6 0.0249 -1.5911 2.3941 27 6 0.5060 -2.4863 1.4446 28 1 -0.4851 -0.8354 -0.0882 29 1 2.9038 -1.9479 -1.7021 30 1 4.4974 -3.8219 -3.0897 31 1 3.0250 -3.5222 -4.0438 32 1 3.5009 -1.0885 -4.0126 33 1 4.9733 -1.3888 -3.0585 34 1 7.0437 -2.4902 -4.2807 35 1 7.6625 -2.8136 -6.8068 36 1 5.4402 -2.3609 -8.2483 37 1 3.5138 -1.7836 -6.5676 38 1 0.6229 -5.5409 0.1554 39 1 -1.1425 -5.2751 2.5081 40 1 -1.9653 -3.6734 4.1581 41 1 -1.2303 -1.3282 4.0959 42 1 0.3418 -0.5589 2.3747 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610493115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:30 Heat of formation + Delta-G solvation = 74.053674 kcal Electronic energy + Delta-G solvation = -26347.675378 eV Core-core repulsion = 22679.967913 eV Total energy + Delta-G solvation = -3667.707466 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.15298 -40.78340 -38.74620 -36.19525 -35.35887 -33.92426 -32.54987 -30.72994 -29.41382 -28.79395 -28.60515 -27.56422 -24.96766 -23.96544 -22.29594 -21.16629 -20.48957 -20.36983 -20.06849 -19.51504 -18.62773 -17.41778 -16.48283 -15.86475 -15.81745 -15.47168 -14.94895 -14.62435 -14.49240 -14.21767 -13.88716 -13.72335 -13.32906 -13.25836 -13.24239 -13.08599 -12.54204 -12.36170 -12.27350 -12.10079 -11.98972 -11.84331 -11.52793 -11.31316 -10.98444 -10.69298 -10.56768 -10.47089 -10.00929 -9.65667 -9.32990 -8.94163 -8.77038 -8.66586 -8.17959 -7.67455 -7.16791 -6.88040 -4.85336 1.59712 2.24152 2.51219 2.75638 2.87486 2.93161 2.98552 3.04561 3.15044 3.67659 3.78267 4.06179 4.23159 4.54144 4.59024 4.71110 4.78771 5.02444 5.15505 5.20941 5.45955 5.46950 5.60225 5.63878 5.71937 5.74868 5.85519 5.96351 6.19856 6.25529 6.29298 6.30516 6.43845 6.65285 6.72869 6.78305 6.87602 6.97135 7.06381 7.21221 7.28110 7.33672 7.37755 7.43001 7.65458 7.68835 7.96126 8.07252 8.49657 8.73231 8.96084 9.93332 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.003647 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.728060 B = 7676.066083 C = 9197.450304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.029 3.971 3 Si 1.074 2.926 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.452 4.452 8 H 0.101 0.899 9 N -0.266 5.266 10 C -0.022 4.022 11 C 0.599 3.401 12 O -0.553 6.553 13 N -0.729 5.729 14 C 0.107 3.893 15 C 0.094 3.906 16 N -0.443 5.443 17 C -0.014 4.014 18 C -0.205 4.205 19 C -0.205 4.205 20 C -0.013 4.013 21 C -0.162 4.162 22 C -0.129 4.129 23 C -0.080 4.080 24 C -0.159 4.159 25 C -0.133 4.133 26 C -0.081 4.081 27 C 0.070 3.930 28 H 0.292 0.708 29 H 0.418 0.582 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.160 0.840 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.160 0.840 38 H 0.135 0.865 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.912 1.031 -4.357 7.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.188 4.188 3 Si 0.896 3.104 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.118 0.882 9 N 0.069 4.931 10 C -0.137 4.137 11 C 0.388 3.612 12 O -0.432 6.432 13 N -0.391 5.391 14 C -0.018 4.018 15 C -0.029 4.029 16 N -0.118 5.118 17 C -0.144 4.144 18 C -0.229 4.229 19 C -0.230 4.230 20 C -0.143 4.143 21 C -0.190 4.190 22 C -0.134 4.134 23 C -0.099 4.099 24 C -0.178 4.178 25 C -0.154 4.154 26 C -0.101 4.101 27 C -0.044 4.044 28 H 0.104 0.896 29 H 0.264 0.736 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.177 0.823 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.177 0.823 38 H 0.153 0.847 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.780 2.277 -4.446 7.639 hybrid contribution 0.103 -1.263 0.048 1.268 sum 5.882 1.014 -4.398 7.414 Atomic orbital electron populations 1.70595 1.07000 1.33343 1.33296 1.26851 0.96156 1.02849 0.92951 0.83431 0.75322 0.73698 0.77946 1.19352 1.19919 1.20137 1.20421 0.97267 0.85777 1.54438 0.88167 1.40113 1.30002 1.06226 1.16714 1.20123 1.06791 0.88330 0.98432 1.17207 0.78038 0.84190 0.81761 1.90740 1.63589 1.21236 1.67642 1.46580 1.53182 1.13709 1.25665 1.21499 0.96515 0.96103 0.87716 1.21989 0.97406 0.98014 0.85497 1.43998 1.08693 1.53326 1.05823 1.21875 0.84927 1.08677 0.98899 1.20875 0.99179 1.10267 0.92610 1.20876 0.93388 1.09901 0.98793 1.21892 0.99800 1.09614 0.82947 1.20427 1.01881 0.98421 0.98240 1.18012 1.02854 0.93263 0.99249 1.20136 0.96995 0.98452 0.94326 1.20348 1.03139 0.93888 1.00452 1.20627 0.99646 0.95740 0.99353 1.20201 0.97865 0.98410 0.93652 1.18434 0.99482 0.94630 0.91841 0.89557 0.73600 0.91152 0.91263 0.88300 0.88485 0.82288 0.84901 0.84887 0.82250 0.84738 0.87376 0.87473 0.87157 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -19.94 12.01 55.50 0.67 -19.27 16 2 C 0.03 0.65 4.40 -17.47 -0.08 0.57 16 3 Si 1.07 19.03 29.96 -169.99 -5.09 13.94 16 4 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.27 -4.74 7.11 56.52 0.40 -4.33 16 6 H -0.28 -4.44 7.11 56.52 0.40 -4.04 16 7 C -0.45 -10.17 7.78 -15.01 -0.12 -10.28 16 8 H 0.10 2.09 6.29 -52.49 -0.33 1.76 16 9 N -0.27 -6.31 2.57 -56.08 -0.14 -6.45 16 10 C -0.02 -0.52 6.77 -82.25 -0.56 -1.07 16 11 C 0.60 13.06 7.76 -12.75 -0.10 12.96 16 12 O -0.55 -12.99 16.86 5.22 0.09 -12.91 16 13 N -0.73 -13.26 5.49 -61.55 -0.34 -13.60 16 14 C 0.11 1.60 6.00 -4.04 -0.02 1.57 16 15 C 0.09 1.12 6.20 -4.04 -0.03 1.10 16 16 N -0.44 -5.48 2.75 -117.13 -0.32 -5.80 16 17 C -0.01 -0.17 11.43 -16.75 -0.19 -0.36 16 18 C -0.20 -2.43 10.86 -39.78 -0.43 -2.87 16 19 C -0.20 -2.46 10.86 -39.78 -0.43 -2.89 16 20 C -0.01 -0.16 11.43 -16.75 -0.19 -0.35 16 21 C -0.16 -3.65 10.55 -39.02 -0.41 -4.07 16 22 C -0.13 -2.89 6.16 -106.89 -0.66 -3.55 16 23 C -0.08 -1.55 10.06 -39.51 -0.40 -1.95 16 24 C -0.16 -2.88 9.97 -39.95 -0.40 -3.28 16 25 C -0.13 -2.55 10.02 -39.50 -0.40 -2.95 16 26 C -0.08 -1.80 8.57 -39.41 -0.34 -2.14 16 27 C 0.07 1.66 5.42 -83.83 -0.45 1.21 16 28 H 0.29 7.63 6.93 -40.82 -0.28 7.34 16 29 H 0.42 7.56 4.25 -40.82 -0.17 7.38 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.16 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.13 2.80 8.06 -52.49 -0.42 2.38 16 39 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 42 H 0.12 2.70 6.77 -52.49 -0.36 2.34 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -28.06 356.47 -9.98 -38.04 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -5.01 Total: 19.02 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -5.20 Total: -18.34 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.14 Total: -45.12 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.09 Total: 13.94 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.06 -9.98 -38.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610493115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.091 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds