Wall clock time and date at job start Tue Mar 31 2020 13:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86800 * 120.00363 * 2 1 4 4 H 1.48498 * 109.46988 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46721 * 119.99989 * 3 2 1 6 6 H 1.48501 * 109.46947 * 239.99996 * 3 2 1 7 7 C 1.39018 * 119.99461 * 179.72550 * 2 1 3 8 8 H 1.08002 * 119.99743 * 161.74051 * 7 2 1 9 9 N 1.36886 * 120.00188 * 341.73913 * 7 2 1 10 10 C 1.38204 * 125.62411 * 137.62410 * 9 7 2 11 11 C 1.46896 * 125.43410 * 0.02562 * 10 9 7 12 12 O 1.21665 * 120.00214 * 173.37599 * 11 10 9 13 13 N 1.34784 * 119.99725 * 353.37460 * 11 10 9 14 14 C 1.46496 * 119.99498 * 184.70673 * 13 11 10 15 15 C 1.53000 * 109.46843 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.47387 * 179.97438 * 15 14 13 17 17 C 1.36347 * 125.63421 * 269.69132 * 16 15 14 18 18 C 1.34851 * 108.21451 * 179.82790 * 17 16 15 19 19 C 1.40892 * 107.42172 * 0.42572 * 18 17 16 20 20 C 1.34849 * 107.41162 * 359.73561 * 19 18 17 21 21 C 1.36124 * 109.12990 * 179.82530 * 10 9 7 22 22 C 1.41697 * 107.74508 * 0.43303 * 21 10 9 23 23 C 1.40027 * 133.34574 * 179.76063 * 22 21 10 24 24 C 1.36575 * 119.82961 * 179.97438 * 23 22 21 25 25 C 1.38857 * 120.59758 * 359.97438 * 24 23 22 26 26 C 1.37845 * 120.63827 * 0.02562 * 25 24 23 27 27 C 1.37844 * 125.61714 * 317.93088 * 9 7 2 28 28 H 0.97004 * 120.00622 * 173.97097 * 1 2 3 29 29 H 0.96998 * 119.99793 * 4.70849 * 13 11 10 30 30 H 1.09002 * 109.47227 * 300.00030 * 14 13 11 31 31 H 1.08997 * 109.47672 * 60.00363 * 14 13 11 32 32 H 1.09002 * 109.46951 * 299.99853 * 15 14 13 33 33 H 1.08997 * 109.47430 * 59.99863 * 15 14 13 34 34 H 1.07999 * 125.89102 * 359.96296 * 17 16 15 35 35 H 1.07997 * 126.28846 * 180.16250 * 18 17 16 36 36 H 1.07994 * 126.29243 * 179.74029 * 19 18 17 37 37 H 1.08008 * 125.88467 * 180.02562 * 20 19 18 38 38 H 1.08002 * 126.12511 * 180.16777 * 21 10 9 39 39 H 1.07996 * 120.08364 * 359.96556 * 23 22 21 40 40 H 1.07997 * 119.70408 * 180.02562 * 24 23 22 41 41 H 1.08004 * 119.68603 * 180.02562 * 25 24 23 42 42 H 1.07997 * 120.09879 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 1.2826 2.7464 0.0006 5 1 3.1012 1.6962 1.2125 6 1 3.1013 1.6962 -1.2125 7 6 2.0084 -1.2040 0.0058 8 1 3.0476 -1.2290 -0.2872 9 7 1.3756 -2.3578 0.3828 10 6 1.4986 -3.5844 -0.2420 11 6 2.3318 -3.8605 -1.4199 12 8 2.4622 -5.0025 -1.8186 13 7 2.9518 -2.8486 -2.0589 14 6 3.6979 -3.1092 -3.2924 15 6 4.3002 -1.8015 -3.8100 16 7 5.0469 -2.0621 -5.0432 17 6 6.3696 -2.3843 -5.1178 18 6 6.6902 -2.5510 -6.4170 19 6 5.5251 -2.3136 -7.1728 20 6 4.5355 -2.0167 -6.3062 21 6 0.7279 -4.4969 0.4110 22 6 0.0834 -3.8301 1.4824 23 6 -0.8142 -4.2469 2.4730 24 6 -1.2734 -3.3497 3.3946 25 6 -0.8580 -2.0252 3.3596 26 6 0.0249 -1.5911 2.3941 27 6 0.5060 -2.4863 1.4446 28 1 -0.4851 -0.8354 -0.0882 29 1 2.9038 -1.9479 -1.7021 30 1 4.4974 -3.8219 -3.0897 31 1 3.0250 -3.5222 -4.0438 32 1 3.5009 -1.0885 -4.0126 33 1 4.9733 -1.3888 -3.0585 34 1 7.0437 -2.4902 -4.2807 35 1 7.6625 -2.8136 -6.8068 36 1 5.4402 -2.3609 -8.2483 37 1 3.5138 -1.7836 -6.5676 38 1 0.6229 -5.5409 0.1554 39 1 -1.1425 -5.2751 2.5081 40 1 -1.9653 -3.6734 4.1581 41 1 -1.2303 -1.3282 4.0959 42 1 0.3418 -0.5589 2.3747 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610493115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:29 Heat of formation + Delta-G solvation = 61.196490 kcal Electronic energy + Delta-G solvation = -26348.232908 eV Core-core repulsion = 22679.967913 eV Total energy + Delta-G solvation = -3668.264995 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.48175 -42.03481 -40.37190 -37.79671 -36.75034 -35.58611 -33.75856 -32.39281 -30.94763 -30.13935 -29.67986 -28.88900 -26.67174 -25.31798 -23.67882 -22.80818 -21.94162 -21.39971 -21.38828 -20.81130 -20.22038 -18.60334 -17.88802 -17.50214 -17.26379 -16.92985 -16.46554 -16.10022 -15.86699 -15.64593 -15.20206 -15.01750 -14.87403 -14.75906 -14.42057 -14.29737 -14.07646 -13.86161 -13.51837 -13.28074 -13.09133 -12.93006 -12.74661 -12.59755 -12.49398 -12.20591 -12.12585 -11.97281 -11.59196 -11.37652 -10.96898 -10.61172 -10.30203 -9.60021 -9.40236 -9.08640 -8.86075 -8.55370 -6.61894 -0.05522 0.93024 1.21273 1.29639 1.50298 1.55767 1.69834 1.76889 2.14393 2.17469 2.36708 2.42103 2.61527 2.88469 3.16671 3.58061 3.60578 3.88477 4.07037 4.14282 4.17659 4.30969 4.35664 4.38929 4.39769 4.59426 4.63610 4.67869 4.75356 4.75913 4.83721 5.04921 5.13188 5.23703 5.25292 5.37994 5.38571 5.40565 5.64343 5.72189 5.81109 5.99288 6.03002 6.07981 6.31083 6.37152 6.41256 6.44422 6.81129 7.07819 7.25166 8.13525 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.003647 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.728060 B = 7676.066083 C = 9197.450304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.001 3.999 3 Si 1.117 2.883 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.243 1.243 7 C -0.462 4.462 8 H 0.113 0.887 9 N -0.280 5.280 10 C -0.048 4.048 11 C 0.594 3.406 12 O -0.579 6.579 13 N -0.717 5.717 14 C 0.111 3.889 15 C 0.103 3.897 16 N -0.449 5.449 17 C -0.025 4.025 18 C -0.217 4.217 19 C -0.217 4.217 20 C -0.029 4.029 21 C -0.174 4.174 22 C -0.149 4.149 23 C -0.085 4.085 24 C -0.151 4.151 25 C -0.121 4.121 26 C -0.111 4.111 27 C 0.045 3.955 28 H 0.270 0.730 29 H 0.419 0.581 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.178 0.822 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.174 0.826 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.151 0.849 41 H 0.142 0.858 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.310 1.670 -3.726 7.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.210 4.210 3 Si 0.933 3.067 4 H -0.205 1.205 5 H -0.191 1.191 6 H -0.167 1.167 7 C -0.589 4.589 8 H 0.130 0.870 9 N 0.055 4.945 10 C -0.162 4.162 11 C 0.383 3.617 12 O -0.460 6.460 13 N -0.377 5.377 14 C -0.014 4.014 15 C -0.019 4.019 16 N -0.125 5.125 17 C -0.155 4.155 18 C -0.242 4.242 19 C -0.241 4.241 20 C -0.158 4.158 21 C -0.202 4.202 22 C -0.154 4.154 23 C -0.103 4.103 24 C -0.170 4.170 25 C -0.141 4.141 26 C -0.131 4.131 27 C -0.069 4.069 28 H 0.081 0.919 29 H 0.266 0.734 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.195 0.805 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.191 0.809 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.169 0.831 41 H 0.160 0.840 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.205 2.915 -3.839 7.857 hybrid contribution -0.074 -1.542 -0.085 1.546 sum 6.131 1.373 -3.924 7.407 Atomic orbital electron populations 1.70715 1.08102 1.31804 1.36136 1.28198 0.95920 1.05625 0.91288 0.82943 0.74545 0.69636 0.79563 1.20492 1.19141 1.16688 1.20782 0.97818 0.85846 1.54425 0.86990 1.40287 1.30580 1.06496 1.17140 1.20481 1.07686 0.88713 0.99327 1.17192 0.78269 0.84480 0.81765 1.90706 1.64741 1.22149 1.68388 1.46472 1.52228 1.12864 1.26105 1.21593 0.95812 0.97972 0.86007 1.21903 0.97961 0.96157 0.85917 1.44062 1.08924 1.53716 1.05798 1.22305 0.85050 1.08366 0.99731 1.21211 0.99965 1.10182 0.92817 1.21205 0.93507 1.09657 0.99731 1.22267 1.00681 1.09813 0.83046 1.20667 1.02069 0.98871 0.98565 1.18392 1.03884 0.92951 1.00182 1.20560 0.95957 1.00337 0.93473 1.20825 1.02681 0.92920 1.00561 1.21090 0.97605 0.97038 0.98391 1.20267 1.00019 0.97710 0.95138 1.18870 0.99921 0.95689 0.92406 0.91899 0.73434 0.91554 0.92167 0.87461 0.86788 0.80452 0.83359 0.83473 0.80910 0.83885 0.84447 0.83114 0.84037 0.87906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.08 12.01 21.67 0.26 -41.82 16 2 C 0.00 0.03 4.40 84.95 0.37 0.41 16 3 Si 1.12 37.40 29.96 68.60 2.06 39.46 16 4 H -0.28 -9.82 7.11 99.48 0.71 -9.12 16 5 H -0.27 -8.57 7.11 99.48 0.71 -7.86 16 6 H -0.24 -6.86 7.11 99.48 0.71 -6.15 16 7 C -0.46 -21.04 7.78 84.09 0.65 -20.38 16 8 H 0.11 4.65 6.29 -2.91 -0.02 4.63 16 9 N -0.28 -13.62 2.57 -331.33 -0.85 -14.47 16 10 C -0.05 -2.29 6.77 39.91 0.27 -2.02 16 11 C 0.59 26.54 7.76 86.51 0.67 27.21 16 12 O -0.58 -27.84 16.86 -4.24 -0.07 -27.91 16 13 N -0.72 -26.19 5.49 -466.88 -2.56 -28.75 16 14 C 0.11 3.27 6.00 86.38 0.52 3.79 16 15 C 0.10 2.32 6.20 86.38 0.54 2.86 16 16 N -0.45 -10.47 2.75 -524.47 -1.44 -11.91 16 17 C -0.03 -0.57 11.43 83.21 0.95 0.39 16 18 C -0.22 -4.85 10.86 22.14 0.24 -4.61 16 19 C -0.22 -4.92 10.86 22.14 0.24 -4.67 16 20 C -0.03 -0.67 11.43 83.21 0.95 0.28 16 21 C -0.17 -8.03 10.55 22.63 0.24 -7.79 16 22 C -0.15 -6.74 6.16 -21.34 -0.13 -6.87 16 23 C -0.08 -3.12 10.06 22.31 0.22 -2.90 16 24 C -0.15 -5.00 9.97 22.03 0.22 -4.78 16 25 C -0.12 -4.41 10.02 22.33 0.22 -4.19 16 26 C -0.11 -4.96 8.57 22.38 0.19 -4.77 16 27 C 0.05 2.17 5.42 39.06 0.21 2.38 16 28 H 0.27 14.69 6.93 -92.71 -0.64 14.05 16 29 H 0.42 15.10 4.25 -92.71 -0.39 14.71 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.18 3.10 8.06 -2.91 -0.02 3.08 16 35 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.17 3.33 8.06 -2.91 -0.02 3.30 16 38 H 0.14 6.12 8.06 -2.91 -0.02 6.09 16 39 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 40 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 41 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 42 H 0.10 4.81 6.77 -2.91 -0.02 4.79 16 Total: -1.00 -62.58 356.47 4.76 -57.82 By element: Atomic # 1 Polarization: 52.45 SS G_CDS: 0.78 Total: 53.23 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 6.59 Total: -25.66 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -4.60 Total: -96.94 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.07 Total: -27.91 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.06 Total: 39.46 kcal Total: -62.58 4.76 -57.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610493115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.021 kcal (2) G-P(sol) polarization free energy of solvation -62.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds