Wall clock time and date at job start Tue Mar 31 2020 14:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99953 * 2 1 4 4 H 1.48505 * 109.46975 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47120 * 299.99619 * 3 2 1 6 6 H 1.48492 * 109.47222 * 59.99869 * 3 2 1 7 7 C 1.37876 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00623 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99683 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47196 * 179.97438 * 9 7 2 11 11 C 1.46954 * 111.00234 * 170.00172 * 10 9 7 12 12 C 1.53054 * 109.36725 * 183.19153 * 11 10 9 13 13 N 1.46958 * 109.36141 * 301.59220 * 12 11 10 14 14 C 1.46901 * 111.00018 * 183.18541 * 13 12 11 15 15 C 1.50697 * 109.46909 * 170.00324 * 14 13 12 16 16 C 1.38225 * 120.01264 * 105.00596 * 15 14 13 17 17 C 1.38225 * 120.02437 * 180.02562 * 16 15 14 18 18 C 1.38262 * 120.05278 * 359.97438 * 17 16 15 19 19 N 1.48003 * 119.98561 * 179.97438 * 18 17 16 20 20 O 1.21798 * 119.99995 * 0.02562 * 19 18 17 21 21 O 1.21805 * 119.99990 * 179.97438 * 19 18 17 22 22 C 1.38180 * 120.02747 * 0.02562 * 18 17 16 23 23 C 1.38436 * 120.01480 * 285.02023 * 15 14 13 24 24 F 1.35099 * 120.02621 * 0.02562 * 23 15 14 25 25 C 1.46963 * 110.87856 * 59.32495 * 13 12 11 26 26 C 1.46959 * 111.00073 * 293.80022 * 10 9 7 27 27 H 0.97003 * 119.99862 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47196 * 60.00550 * 9 7 2 29 29 H 1.08997 * 109.47377 * 300.00318 * 9 7 2 30 30 H 1.09001 * 109.49392 * 63.21742 * 11 10 9 31 31 H 1.08998 * 109.48848 * 303.15541 * 11 10 9 32 32 H 1.08996 * 109.48841 * 181.63367 * 12 11 10 33 33 H 1.08997 * 109.49085 * 61.56127 * 12 11 10 34 34 H 1.09000 * 109.46714 * 50.00776 * 14 13 12 35 35 H 1.09000 * 109.47271 * 290.00616 * 14 13 12 36 36 H 1.07994 * 119.98535 * 0.29209 * 16 15 14 37 37 H 1.07997 * 119.96961 * 180.02562 * 17 16 15 38 38 H 1.08000 * 120.01191 * 179.97438 * 22 18 17 39 39 H 1.08997 * 109.48986 * 60.64005 * 25 13 12 40 40 H 1.08998 * 109.49181 * 180.71019 * 25 13 12 41 41 H 1.08997 * 109.48730 * 296.77771 * 26 10 9 42 42 H 1.08999 * 109.49144 * 56.84610 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5209 -4.8940 0.2387 12 6 2.5564 -6.0187 0.3104 13 7 3.3194 -6.0593 -0.9449 14 6 4.2741 -7.1758 -0.9449 15 6 4.8580 -7.3374 -2.3246 16 6 6.1505 -6.9200 -2.5816 17 6 6.6862 -7.0675 -3.8473 18 6 5.9304 -7.6332 -4.8574 19 7 6.5053 -7.7900 -6.2122 20 8 7.6441 -7.4212 -6.4369 21 8 5.8398 -8.2888 -7.1022 22 6 4.6381 -8.0513 -4.6029 23 6 4.1003 -7.9036 -3.3354 24 9 2.8367 -8.3113 -3.0856 25 6 4.0042 -4.7810 -1.1831 26 6 2.9687 -3.6562 -1.2548 27 1 -0.4850 0.8401 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8902 30 1 0.8253 -5.0915 -0.5769 31 1 0.9733 -4.8433 1.1798 32 1 2.0485 -6.9717 0.4581 33 1 3.2355 -5.8353 1.1430 34 1 3.7600 -8.0933 -0.6582 35 1 5.0739 -6.9700 -0.2336 36 1 6.7433 -6.4823 -1.7922 37 1 7.6962 -6.7415 -4.0470 38 1 4.0478 -8.4927 -5.3923 39 1 4.6997 -4.5835 -0.3675 40 1 4.5518 -4.8316 -2.1242 41 1 2.2895 -3.8396 -2.0873 42 1 3.4766 -2.7032 -1.4025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611174573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:59 Heat of formation + Delta-G solvation = -5.027943 kcal Electronic energy + Delta-G solvation = -27054.651111 eV Core-core repulsion = 22952.745184 eV Total energy + Delta-G solvation = -4101.905927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.36410 -42.49720 -40.04935 -38.66558 -36.87918 -35.55395 -33.09716 -32.19135 -31.44014 -30.57352 -29.02659 -27.22794 -25.48759 -23.86188 -23.77612 -23.17985 -21.94241 -21.38747 -19.90229 -19.34360 -19.02767 -17.85993 -17.04101 -16.79324 -16.54305 -16.44634 -16.27358 -15.65924 -14.85682 -14.70926 -14.57912 -14.35290 -14.28514 -13.85387 -13.50867 -13.44366 -13.07112 -12.67152 -12.33825 -12.21335 -12.07058 -11.84991 -11.79643 -11.47229 -11.43718 -11.25282 -10.99420 -10.85786 -10.71930 -10.52607 -10.40861 -9.98059 -9.83202 -9.51685 -9.23483 -8.50891 -8.41203 -7.33385 -6.08172 -4.10048 -0.62553 0.33742 0.89806 0.98598 2.62921 3.26774 3.34416 3.38233 3.49994 3.74436 3.86443 3.99367 4.13870 4.33194 4.37085 4.61608 4.81706 4.84871 5.03771 5.10461 5.17741 5.20700 5.27014 5.27570 5.38124 5.49873 5.60869 5.66767 5.72746 5.80372 5.89663 6.04112 6.06672 6.31917 6.45387 6.56262 6.92276 6.96761 7.24247 7.28850 7.30252 7.73123 8.01004 8.11839 8.47119 8.97423 9.54582 11.02716 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.002852 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.622773 B = 9816.617145 C =10820.428684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.056 3.944 12 C 0.063 3.937 13 N -0.534 5.534 14 C 0.085 3.915 15 C -0.056 4.056 16 C -0.084 4.084 17 C -0.065 4.065 18 C -0.021 4.021 19 N 0.029 4.971 20 O -0.153 6.153 21 O -0.156 6.156 22 C -0.097 4.097 23 C 0.132 3.868 24 F -0.110 7.110 25 C 0.055 3.945 26 C 0.068 3.932 27 H 0.261 0.739 28 H -0.008 1.008 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.165 0.835 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.028 0.972 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.834 -18.696 -4.288 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.073 4.073 12 C -0.064 4.064 13 N -0.259 5.259 14 C -0.042 4.042 15 C -0.058 4.058 16 C -0.103 4.103 17 C -0.084 4.084 18 C -0.104 4.104 19 N 0.549 4.451 20 O -0.370 6.370 21 O -0.373 6.373 22 C -0.117 4.117 23 C 0.111 3.889 24 F -0.088 7.088 25 C -0.073 4.073 26 C -0.061 4.061 27 H 0.071 0.929 28 H 0.010 0.990 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.182 0.818 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.322 -18.502 -3.599 21.987 hybrid contribution 0.188 0.849 -0.415 0.963 sum 11.510 -17.653 -4.014 21.453 Atomic orbital electron populations 1.69963 1.06080 1.26738 1.50902 1.24994 0.94865 0.99352 0.95393 0.86453 0.80026 0.83441 0.77569 1.19683 1.21069 1.20975 1.21169 0.93435 0.89923 1.50180 0.91902 1.19707 0.90015 0.87237 0.96178 1.62304 1.28238 1.02800 1.33013 1.22069 0.94679 0.89836 1.00741 1.22184 0.96061 0.99023 0.89154 1.62231 1.24782 1.02863 1.36005 1.21081 0.95717 0.96957 0.90492 1.20446 0.93847 0.94864 0.96640 1.21063 0.94290 0.98580 0.96415 1.21088 1.01200 0.95050 0.91054 1.20732 0.95498 1.10517 0.83637 1.43515 1.00642 0.98207 1.02702 1.94553 1.03004 1.51527 1.87926 1.94566 1.60387 1.44108 1.38204 1.20899 0.93873 0.99311 0.97645 1.17009 0.80863 0.98845 0.92172 1.91613 1.35414 1.87473 1.94344 1.22333 0.96427 0.88491 1.00026 1.21972 0.95400 0.97262 0.91448 0.92917 0.99046 0.95153 0.95001 0.90735 0.90869 0.93874 0.88834 0.92459 0.82519 0.82224 0.81751 0.93847 0.91477 0.95334 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -13.95 8.47 -34.44 -0.29 -14.24 16 8 H 0.06 1.70 7.13 -52.48 -0.37 1.33 16 9 C 0.19 4.94 4.72 -4.98 -0.02 4.92 16 10 N -0.54 -11.15 4.70 -235.91 -1.11 -12.26 16 11 C 0.06 0.96 5.61 -3.77 -0.02 0.94 16 12 C 0.06 0.84 5.61 -3.76 -0.02 0.82 16 13 N -0.53 -6.78 4.70 -235.90 -1.11 -7.89 16 14 C 0.09 0.77 4.78 -4.98 -0.02 0.75 16 15 C -0.06 -0.49 4.43 -104.56 -0.46 -0.95 16 16 C -0.08 -0.58 9.03 -39.59 -0.36 -0.94 16 17 C -0.06 -0.49 9.55 -39.58 -0.38 -0.86 16 18 C -0.02 -0.20 6.85 -79.97 -0.55 -0.75 16 19 N 0.03 0.33 4.45 33.95 0.15 0.49 16 20 O -0.15 -1.84 18.45 -29.46 -0.54 -2.39 16 21 O -0.16 -1.96 18.45 -29.46 -0.54 -2.50 16 22 C -0.10 -0.90 9.54 -39.51 -0.38 -1.28 16 23 C 0.13 1.28 7.25 -39.42 -0.29 0.99 16 24 F -0.11 -1.23 16.76 2.25 0.04 -1.19 16 25 C 0.06 0.77 5.42 -3.76 -0.02 0.75 16 26 C 0.07 1.27 5.43 -3.76 -0.02 1.25 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 29 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 32 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.77 7.97 -51.93 -0.41 0.36 16 35 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 36 H 0.16 0.71 8.00 -52.49 -0.42 0.29 16 37 H 0.16 0.94 7.61 -52.49 -0.40 0.54 16 38 H 0.16 1.36 7.61 -52.49 -0.40 0.97 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.84 6.71 -51.93 -0.35 0.49 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.76 6.79 -51.93 -0.35 1.41 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -30.89 356.70 -10.58 -41.46 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -5.62 Total: -4.55 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.93 Total: -7.16 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -1.33 Total: -45.30 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -1.09 Total: -4.89 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.89 -10.58 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.433 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds