Wall clock time and date at job start Tue Mar 31 2020 15:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38343 * 119.38936 * 2 1 4 4 C 1.38380 * 119.50326 * 180.25261 * 3 2 1 5 5 C 1.50694 * 120.81503 * 179.75099 * 4 3 2 6 6 C 1.39967 * 118.36399 * 359.47829 * 4 3 2 7 7 C 1.43201 * 120.60826 * 180.27158 * 6 4 3 8 8 N 4.80324 * 135.13755 * 359.96625 * 3 1 2 9 9 C 1.40542 * 118.77850 * 0.25053 * 6 4 3 10 10 N 1.38401 * 119.82307 * 179.97438 * 9 6 4 11 11 C 1.46503 * 119.99892 * 179.97438 * 10 9 6 12 12 C 1.50704 * 109.47009 * 180.02562 * 11 10 9 13 13 C 1.38299 * 119.92856 * 269.72896 * 12 11 10 14 14 C 1.38109 * 120.06568 * 179.72550 * 13 12 11 15 15 C 1.38879 * 119.92706 * 0.56986 * 14 13 12 16 16 O 1.35750 * 120.06557 * 179.68247 * 15 14 13 17 17 C 1.34835 * 116.99920 * 174.48455 * 16 15 14 18 18 H 1.07997 * 119.99878 * 5.06379 * 17 16 15 19 19 C 1.38651 * 119.99921 * 185.05563 * 17 16 15 20 20 N 1.31556 * 120.00157 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99899 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47252 * 89.99749 * 21 19 17 23 23 H 1.48496 * 109.46919 * 210.00229 * 21 19 17 24 24 H 1.48501 * 109.46673 * 329.99917 * 21 19 17 25 25 C 1.38881 * 119.86453 * 359.70520 * 15 14 13 26 26 C 1.38096 * 119.93167 * 359.97438 * 25 15 14 27 27 N 1.31885 * 119.39173 * 179.71720 * 2 1 3 28 28 H 1.09008 * 109.47569 * 270.28078 * 1 2 3 29 29 H 1.09004 * 109.47296 * 30.27811 * 1 2 3 30 30 H 1.08997 * 109.47325 * 150.27718 * 1 2 3 31 31 H 1.08001 * 120.24716 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47364 * 269.71723 * 5 4 3 33 33 H 1.09008 * 109.47238 * 149.72095 * 5 4 3 34 34 H 1.08999 * 109.47218 * 29.72026 * 5 4 3 35 35 H 0.97001 * 120.00395 * 0.02562 * 10 9 6 36 36 H 1.08995 * 109.47281 * 300.00413 * 11 10 9 37 37 H 1.09001 * 109.47080 * 60.00907 * 11 10 9 38 38 H 1.07999 * 119.97125 * 359.97438 * 13 12 11 39 39 H 1.08000 * 120.03136 * 180.27129 * 14 13 12 40 40 H 0.96999 * 120.00116 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.03309 * 179.97438 * 25 15 14 42 42 H 1.07993 * 119.97084 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1858 1.2054 0.0000 4 6 3.5696 1.2081 -0.0053 5 6 4.3390 2.5039 -0.0111 6 6 4.2370 -0.0221 0.0007 7 6 5.6680 -0.0753 0.0014 8 7 6.8033 -0.1176 0.0020 9 6 3.4769 -1.2042 0.0064 10 7 4.1146 -2.4326 0.0118 11 6 3.3260 -3.6672 0.0184 12 6 4.2530 -4.8554 0.0241 13 6 4.6726 -5.4089 -1.1719 14 6 5.5267 -6.4943 -1.1700 15 6 5.9547 -7.0370 0.0345 16 8 6.7891 -8.1079 0.0396 17 6 7.2568 -8.5137 1.2373 18 1 6.9013 -8.0448 2.1429 19 6 8.1941 -9.5331 1.3063 20 7 8.6274 -10.1041 0.2031 21 14 8.8415 -10.0959 2.9657 22 1 7.9814 -11.1879 3.4882 23 1 10.2327 -10.5920 2.8118 24 1 8.8251 -8.9550 3.9162 25 6 5.5271 -6.4824 1.2338 26 6 4.6783 -5.3931 1.2253 27 7 2.1542 -1.1491 0.0057 28 1 -0.3634 0.0050 1.0277 29 1 -0.3634 0.8875 -0.5182 30 1 -0.3634 -0.8924 -0.5095 31 1 1.6399 2.1373 -0.0004 32 1 4.5249 2.8115 -1.0401 33 1 5.2896 2.3643 0.5038 34 1 3.7590 3.2731 0.4989 35 1 5.0836 -2.4761 0.0121 36 1 2.6980 -3.6926 0.9089 37 1 2.6968 -3.7012 -0.8711 38 1 4.3352 -4.9896 -2.1082 39 1 5.8574 -6.9234 -2.1043 40 1 9.2833 -10.8170 0.2514 41 1 5.8579 -6.9026 2.1720 42 1 4.3450 -4.9615 2.1574 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727826488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:04 Heat of formation + Delta-G solvation = 55.244117 kcal Electronic energy + Delta-G solvation = -24993.643901 eV Core-core repulsion = 21325.120792 eV Total energy + Delta-G solvation = -3668.523109 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.78847 -39.18819 -37.26819 -36.78207 -35.73067 -34.19387 -32.54461 -31.87230 -30.29061 -29.66145 -28.57489 -27.69239 -25.83014 -24.65310 -23.01189 -22.07354 -21.45550 -20.61729 -18.95097 -18.09233 -17.52993 -17.13433 -16.92298 -15.46241 -15.06097 -14.79219 -14.62331 -14.51592 -14.10828 -13.89199 -13.83423 -13.74172 -13.63567 -13.38416 -13.22169 -13.13767 -12.89505 -12.80358 -12.67836 -12.57933 -12.44207 -12.05495 -11.96445 -11.70315 -11.38147 -10.93908 -10.81714 -10.70766 -10.49570 -10.19587 -9.74629 -9.61513 -9.43017 -8.92188 -8.30225 -7.88035 -7.35166 -6.53641 -4.12541 0.52740 1.20051 2.02162 2.11991 2.56314 2.87575 3.05925 3.09177 3.14067 3.17550 3.71571 3.77180 3.90078 4.16071 4.28340 4.47532 4.71406 4.89729 5.00671 5.05391 5.10486 5.16402 5.17705 5.22130 5.31653 5.32649 5.40502 5.52741 5.61511 5.66047 5.74830 5.78772 5.85851 5.96197 6.10808 6.27509 6.33356 6.58070 6.78668 6.93291 6.95935 7.10170 7.21395 7.26072 7.34070 7.41893 7.70229 7.90985 7.98479 8.91599 9.59333 10.63816 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.019838 B = 0.002351 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.123064 B =11908.749248 C =12529.713641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.214 3.786 3 C -0.248 4.248 4 C 0.054 3.946 5 C -0.125 4.125 6 C -0.175 4.175 7 C 0.260 3.740 8 N -0.423 5.423 9 C 0.461 3.539 10 N -0.700 5.700 11 C 0.189 3.811 12 C -0.221 4.221 13 C -0.053 4.053 14 C -0.196 4.196 15 C 0.161 3.839 16 O -0.172 6.172 17 C -0.394 4.394 18 H 0.094 0.906 19 C 0.040 3.960 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.237 4.237 26 C -0.049 4.049 27 N -0.543 5.543 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.138 0.862 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.410 0.590 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.272 0.728 41 H 0.128 0.872 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.394 22.053 0.212 26.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.073 3.927 3 C -0.271 4.271 4 C 0.044 3.956 5 C -0.181 4.181 6 C -0.186 4.186 7 C -0.054 4.054 8 N -0.099 5.099 9 C 0.219 3.781 10 N -0.329 5.329 11 C 0.067 3.933 12 C -0.222 4.222 13 C -0.072 4.072 14 C -0.215 4.215 15 C 0.107 3.893 16 O -0.075 6.075 17 C -0.470 4.470 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.191 1.191 25 C -0.256 4.256 26 C -0.068 4.068 27 N -0.262 5.262 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.156 0.844 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.248 0.752 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.146 0.854 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.915 20.616 -0.029 24.873 hybrid contribution 0.828 0.360 0.879 1.260 sum -13.087 20.977 0.850 24.739 Atomic orbital electron populations 1.20816 0.88482 1.03840 1.03495 1.21188 0.96696 0.87322 0.87491 1.21370 0.93081 0.99286 1.13392 1.20034 0.93695 0.93224 0.88600 1.20936 1.00095 0.93605 1.03468 1.16106 0.85110 0.93823 1.23599 1.25327 0.92263 0.94373 0.93465 1.81314 1.11693 1.06518 1.10414 1.18237 0.88105 0.84987 0.86779 1.45232 1.09268 1.02477 1.75878 1.20030 0.91698 0.79568 1.02045 1.19234 1.07840 1.01418 0.93723 1.20538 0.95398 0.94647 0.96597 1.20222 1.04756 1.00226 0.96290 1.19443 0.89728 0.86854 0.93316 1.83979 1.52855 1.37479 1.33150 1.21363 1.23489 1.19111 0.83012 0.88912 1.25325 0.95781 0.95903 0.99446 1.70035 1.28766 1.23268 1.27219 0.85691 0.78432 0.79258 0.79959 1.19751 1.20149 1.19125 1.21159 1.05000 1.00949 0.98541 1.20644 0.95122 0.94633 0.96406 1.67198 1.06357 1.29456 1.23212 0.89819 0.90302 0.90061 0.84403 0.89750 0.91130 0.90069 0.75236 0.91276 0.91218 0.86957 0.86346 0.91849 0.85396 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.16 36.00 0.37 -0.23 16 2 C 0.21 1.86 6.78 -82.54 -0.56 1.30 16 3 C -0.25 -1.84 9.41 -39.49 -0.37 -2.21 16 4 C 0.05 0.47 5.95 -103.93 -0.62 -0.15 16 5 C -0.12 -0.80 9.68 36.00 0.35 -0.45 16 6 C -0.17 -1.97 5.77 -106.46 -0.61 -2.59 16 7 C 0.26 3.39 12.72 -22.47 -0.29 3.10 16 8 N -0.42 -6.40 18.54 41.84 0.78 -5.63 16 9 C 0.46 5.63 7.49 -155.08 -1.16 4.46 16 10 N -0.70 -9.17 5.61 -61.37 -0.34 -9.51 16 11 C 0.19 2.52 5.81 -5.19 -0.03 2.49 16 12 C -0.22 -3.58 5.25 -104.57 -0.55 -4.13 16 13 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 14 C -0.20 -4.04 9.99 -39.39 -0.39 -4.43 16 15 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 16 O -0.17 -4.85 9.76 0.03 0.00 -4.85 16 17 C -0.39 -10.88 9.49 30.88 0.29 -10.59 16 18 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 19 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 20 N -0.86 -24.96 13.67 55.48 0.76 -24.21 16 21 Si 0.94 20.36 29.55 -169.99 -5.02 15.33 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C -0.24 -5.03 9.17 -39.40 -0.36 -5.39 16 26 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 27 N -0.54 -6.19 9.45 -8.41 -0.08 -6.27 16 28 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 29 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.53 7.19 -51.92 -0.37 0.16 16 34 H 0.08 0.35 8.10 -51.93 -0.42 -0.07 16 35 H 0.41 5.72 7.30 -40.82 -0.30 5.42 16 36 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 40 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -31.45 369.73 -8.42 -39.87 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.01 Total: 6.48 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -5.06 Total: -16.79 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 1.11 Total: -45.61 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: 0.00 Total: -4.85 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.45 -8.42 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727826488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.112 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds