Wall clock time and date at job start Tue Mar 31 2020 13:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86795 * 120.00279 * 2 1 4 4 H 1.48490 * 109.47561 * 240.00770 * 3 2 1 5 5 H 1.48504 * 109.47079 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47015 * 120.00165 * 3 2 1 7 7 C 1.38650 * 119.99567 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00035 * 179.97438 * 7 2 1 9 9 O 1.34826 * 120.00243 * 359.97438 * 7 2 1 10 10 C 1.35758 * 117.00201 * 185.05811 * 9 7 2 11 11 C 1.38875 * 120.06647 * 354.46628 * 10 9 7 12 12 C 1.38096 * 119.93114 * 180.02562 * 11 10 9 13 13 C 1.38307 * 120.06969 * 0.02924 * 12 11 10 14 14 C 1.50692 * 119.93337 * 179.97438 * 13 12 11 15 15 N 1.46908 * 109.47219 * 89.99582 * 14 13 12 16 16 C 1.46897 * 111.00211 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47202 * 179.97438 * 16 15 14 18 18 N 1.30241 * 126.10962 * 269.68813 * 17 16 15 19 19 N 1.39877 * 110.08512 * 179.90384 * 18 17 16 20 20 H 0.97003 * 125.45494 * 180.13945 * 19 18 17 21 21 C 1.37032 * 109.07630 * 0.36956 * 19 18 17 22 22 C 1.39286 * 133.85072 * 179.78883 * 21 19 18 23 23 C 1.36587 * 119.85457 * 180.02562 * 22 21 19 24 24 C 1.38959 * 120.81529 * 0.02562 * 23 22 21 25 25 C 1.36463 * 120.62994 * 359.97438 * 24 23 22 26 26 C 1.39948 * 119.63504 * 0.02562 * 25 24 23 27 27 C 1.38297 * 120.13354 * 0.24250 * 13 12 11 28 28 C 1.38103 * 120.07220 * 359.46005 * 27 13 12 29 29 H 0.97004 * 119.99492 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.03684 * 359.97438 * 11 10 9 31 31 H 1.08002 * 119.96844 * 179.97438 * 12 11 10 32 32 H 1.08998 * 109.47067 * 329.99772 * 14 13 12 33 33 H 1.08994 * 109.47288 * 209.99074 * 14 13 12 34 34 H 1.00899 * 110.99666 * 303.95030 * 15 14 13 35 35 H 1.08997 * 109.46923 * 300.00126 * 16 15 14 36 36 H 1.09005 * 109.46918 * 59.99500 * 16 15 14 37 37 H 1.08009 * 120.07432 * 0.02562 * 22 21 19 38 38 H 1.08006 * 119.59093 * 179.97438 * 23 22 21 39 39 H 1.08007 * 119.68661 * 180.02562 * 24 23 22 40 40 H 1.07996 * 120.18469 * 179.97438 * 25 24 23 41 41 H 1.08007 * 119.96525 * 179.71097 * 27 13 12 42 42 H 1.08002 * 120.03831 * 180.27316 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.1032 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6962 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5047 0.1056 11 6 3.4570 -3.4396 0.0921 12 6 4.2022 -4.5973 0.1997 13 6 3.5685 -5.8207 0.3201 14 6 4.3846 -7.0820 0.4368 15 7 4.6570 -7.3599 1.8534 16 6 5.4531 -8.5850 2.0060 17 6 5.7125 -8.8365 3.4690 18 7 6.7318 -8.4021 4.1536 19 7 6.6364 -8.8311 5.4816 20 1 7.2753 -8.6329 6.1841 21 6 5.4988 -9.5805 5.6296 22 6 4.9155 -10.2472 6.7044 23 6 3.7438 -10.9266 6.5283 24 6 3.1220 -10.9633 5.2861 25 6 3.6701 -10.3195 4.2150 26 6 4.8702 -9.6164 4.3700 27 6 2.1872 -5.8893 0.3282 28 6 1.4364 -4.7346 0.2271 29 1 -0.4849 0.8401 0.0004 30 1 3.9525 -2.4847 -0.0032 31 1 5.2810 -4.5474 0.1889 32 1 5.3269 -6.9557 -0.0964 33 1 3.8307 -7.9146 0.0033 34 1 5.1132 -6.5754 2.2944 35 1 4.9069 -9.4282 1.5832 36 1 6.4028 -8.4686 1.4837 37 1 5.3887 -10.2270 7.6751 38 1 3.2955 -11.4425 7.3646 39 1 2.1956 -11.5058 5.1674 40 1 3.1810 -10.3530 3.2527 41 1 1.6951 -6.8465 0.4177 42 1 0.3578 -4.7884 0.2379 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729685312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:02 Heat of formation + Delta-G solvation = 84.923843 kcal Electronic energy + Delta-G solvation = -24809.751449 eV Core-core repulsion = 21142.515350 eV Total energy + Delta-G solvation = -3667.236100 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.47526 -39.05556 -37.50583 -37.06810 -35.57040 -32.83399 -32.21662 -30.45833 -30.13525 -29.95130 -29.23047 -26.39822 -25.24964 -23.49512 -23.20521 -22.37004 -21.92332 -20.51632 -20.00104 -18.11991 -17.94982 -17.10607 -16.98656 -15.73790 -15.45992 -15.32649 -15.08765 -14.55147 -14.52251 -14.38988 -14.16402 -13.99378 -13.69778 -13.50388 -13.15296 -12.66153 -12.50199 -12.31137 -12.19242 -12.10641 -11.92096 -11.55932 -11.31072 -11.23086 -10.95055 -10.79000 -10.66133 -10.59713 -10.42774 -10.33077 -9.31677 -8.91091 -8.82074 -8.44342 -8.19812 -8.13718 -7.16352 -6.43590 -4.02399 0.72022 1.29438 2.12915 2.26025 2.36945 2.45448 3.13841 3.15110 3.17760 3.57452 3.97900 4.12848 4.33228 4.41813 4.49092 4.75262 4.76333 4.97709 5.11307 5.16766 5.24530 5.25726 5.32098 5.39253 5.40840 5.47696 5.62989 5.75013 5.78789 5.82573 5.92106 6.08984 6.23726 6.24354 6.31369 6.45481 6.62948 6.73358 6.90616 6.97908 7.05597 7.07997 7.28092 7.31902 7.38472 7.44910 7.47782 7.85899 8.01513 9.01997 9.72521 10.74403 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.002148 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.742610 B =13031.138685 C =13061.669529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.065 4.065 13 C -0.186 4.186 14 C 0.119 3.881 15 N -0.678 5.678 16 C 0.136 3.864 17 C 0.113 3.887 18 N -0.249 5.249 19 N -0.511 5.511 20 H 0.439 0.561 21 C 0.126 3.874 22 C -0.147 4.147 23 C -0.069 4.069 24 C -0.163 4.163 25 C -0.029 4.029 26 C -0.162 4.162 27 C -0.050 4.050 28 C -0.195 4.195 29 H 0.270 0.730 30 H 0.125 0.875 31 H 0.103 0.897 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.346 0.654 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.112 0.888 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.652 -21.407 9.325 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.081 6.081 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.084 4.084 13 C -0.187 4.187 14 C -0.008 4.008 15 N -0.311 5.311 16 C 0.005 3.995 17 C -0.066 4.066 18 N -0.063 5.063 19 N -0.226 5.226 20 H 0.283 0.717 21 C 0.010 3.990 22 C -0.169 4.169 23 C -0.090 4.090 24 C -0.183 4.183 25 C -0.049 4.049 26 C -0.170 4.170 27 C -0.069 4.069 28 C -0.214 4.214 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.121 0.879 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.165 0.835 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.130 0.870 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.726 -20.816 9.357 25.217 hybrid contribution 1.071 0.924 0.373 1.463 sum 11.797 -19.893 9.730 25.091 Atomic orbital electron populations 1.70033 1.05944 1.27750 1.46052 1.25282 0.95840 0.98813 0.96575 0.85790 0.78704 0.79826 0.79162 1.19518 1.20273 1.19530 1.21272 0.91753 0.80872 1.52919 0.89160 1.83979 1.34352 1.11458 1.78306 1.19414 0.90290 0.88070 0.92004 1.21112 0.93831 0.98800 1.11695 1.20601 0.98052 0.91968 0.97735 1.19070 0.93685 0.93335 1.12627 1.20638 0.97274 0.95932 0.87003 1.60608 1.49639 1.05099 1.15712 1.20283 0.97035 0.95490 0.86648 1.23429 0.91087 0.95620 0.96445 1.76533 1.21865 1.18879 0.89069 1.45857 1.21499 1.46665 1.08530 0.71689 1.18874 0.89004 0.95114 0.96009 1.19799 0.98087 1.02315 0.96726 1.20726 0.93899 0.96781 0.97565 1.20691 1.01469 1.03254 0.92882 1.20422 0.92155 0.92979 0.99392 1.19722 0.98973 1.05876 0.92424 1.20466 0.92800 0.96690 0.96960 1.20228 0.99588 0.90345 1.11255 0.91981 0.85682 0.87903 0.95111 0.90766 0.83509 0.88734 0.93284 0.85867 0.85450 0.85558 0.85175 0.86965 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.47 13.67 55.48 0.76 -24.72 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.67 29.55 -169.99 -5.02 15.64 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.39 -11.04 9.49 30.88 0.29 -10.75 16 8 H 0.09 2.35 5.20 -52.48 -0.27 2.08 16 9 O -0.18 -5.12 9.76 0.03 0.00 -5.12 16 10 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 11 C -0.24 -5.12 9.17 -39.40 -0.36 -5.49 16 12 C -0.06 -1.17 9.69 -39.61 -0.38 -1.56 16 13 C -0.19 -3.10 5.40 -104.58 -0.56 -3.66 16 14 C 0.12 1.52 5.81 -4.98 -0.03 1.50 16 15 N -0.68 -8.52 6.48 -116.34 -0.75 -9.27 16 16 C 0.14 1.42 6.28 -4.98 -0.03 1.39 16 17 C 0.11 1.35 6.94 -80.19 -0.56 0.79 16 18 N -0.25 -3.11 12.55 34.84 0.44 -2.67 16 19 N -0.51 -5.35 7.37 32.36 0.24 -5.11 16 20 H 0.44 3.21 8.96 -182.76 -1.64 1.57 16 21 C 0.13 1.36 7.34 -84.18 -0.62 0.74 16 22 C -0.15 -1.27 10.03 -39.79 -0.40 -1.66 16 23 C -0.07 -0.54 9.96 -39.91 -0.40 -0.94 16 24 C -0.16 -1.37 9.97 -39.95 -0.40 -1.77 16 25 C -0.03 -0.29 10.07 -39.58 -0.40 -0.69 16 26 C -0.16 -1.88 6.33 -105.21 -0.67 -2.55 16 27 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 28 C -0.19 -4.14 9.99 -39.39 -0.39 -4.54 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 31 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16 33 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 34 H 0.35 4.73 8.71 -39.29 -0.34 4.39 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 39 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 42 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -32.78 364.67 -10.82 -43.60 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.33 Total: 8.07 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -5.64 Total: -25.93 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.68 Total: -41.77 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.00 Total: -5.12 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.78 -10.82 -43.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729685312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.523 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds