Wall clock time and date at job start Tue Mar 31 2020 14:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86800 * 119.99981 * 2 1 4 4 H 1.48499 * 109.47172 * 269.99999 * 3 2 1 5 5 H 1.48503 * 109.47104 * 29.99762 * 3 2 1 6 6 H 1.48503 * 109.47578 * 149.99835 * 3 2 1 7 7 C 1.38649 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99765 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.35760 * 116.99976 * 185.05157 * 9 7 2 11 11 C 1.38872 * 120.06689 * 354.47071 * 10 9 7 12 12 C 1.38101 * 119.92788 * 180.02562 * 11 10 9 13 13 C 1.38303 * 120.06882 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.93101 * 179.97438 * 13 12 11 15 15 N 1.46902 * 109.46828 * 89.99993 * 14 13 12 16 16 C 1.46902 * 110.99546 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46791 * 180.02562 * 16 15 14 18 18 C 1.38786 * 119.76885 * 90.00414 * 17 16 15 19 19 C 1.36603 * 120.66208 * 180.02562 * 18 17 16 20 20 C 1.39734 * 119.89050 * 359.97438 * 19 18 17 21 21 N 1.35782 * 133.60033 * 180.02562 * 20 19 18 22 22 C 1.30112 * 109.64536 * 180.02562 * 21 20 19 23 23 N 1.36041 * 110.09635 * 359.97438 * 22 21 20 24 24 H 0.96999 * 126.34365 * 179.97438 * 23 22 21 25 25 C 1.38053 * 107.30441 * 0.02562 * 23 22 21 26 26 C 1.37846 * 119.77573 * 269.76401 * 17 16 15 27 27 C 1.38294 * 120.13937 * 0.25879 * 13 12 11 28 28 C 1.38103 * 120.06745 * 359.44770 * 27 13 12 29 29 H 0.96999 * 120.00479 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.03991 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.96423 * 179.97438 * 12 11 10 32 32 H 1.09007 * 109.46949 * 330.00538 * 14 13 12 33 33 H 1.08996 * 109.47513 * 210.00405 * 14 13 12 34 34 H 1.00900 * 110.99613 * 56.05053 * 15 14 13 35 35 H 1.08999 * 109.47187 * 60.01024 * 16 15 14 36 36 H 1.09000 * 109.47415 * 300.00447 * 16 15 14 37 37 H 1.07996 * 119.66599 * 359.97311 * 18 17 16 38 38 H 1.08008 * 120.04893 * 179.97438 * 19 18 17 39 39 H 1.07996 * 124.94942 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.16199 * 359.91521 * 26 17 16 41 41 H 1.08002 * 119.96616 * 179.70720 * 27 13 12 42 42 H 1.07994 * 120.03611 * 180.27802 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5046 0.1076 11 6 3.4571 -3.4394 0.0952 12 6 4.2023 -4.5970 0.2037 13 6 3.5685 -5.8203 0.3242 14 6 4.3848 -7.0817 0.4418 15 7 4.6560 -7.3589 1.8587 16 6 5.4511 -8.5846 2.0124 17 6 5.7083 -8.8363 3.4759 18 6 4.8130 -9.6001 4.2115 19 6 5.0280 -9.8392 5.5391 20 6 6.1594 -9.3121 6.1674 21 7 6.6386 -9.3710 7.4364 22 6 7.7510 -8.7007 7.5155 23 7 8.0620 -8.1665 6.3036 24 1 8.8391 -7.6242 6.0968 25 6 7.0660 -8.5386 5.4230 26 6 6.8337 -8.3104 4.0734 27 6 2.1873 -5.8891 0.3309 28 6 1.4365 -4.7345 0.2288 29 1 -0.4851 0.8400 -0.0004 30 1 3.9527 -2.4845 -0.0001 31 1 5.2811 -4.5470 0.1937 32 1 5.3275 -6.9554 -0.0907 33 1 3.8312 -7.9145 0.0081 34 1 3.7981 -7.4162 2.3866 35 1 6.4012 -8.4692 1.4908 36 1 4.9045 -9.4276 1.5897 37 1 3.9372 -10.0088 3.7296 38 1 4.3245 -10.4347 6.1023 39 1 8.3413 -8.5852 8.4124 40 1 7.5300 -7.7211 3.4952 41 1 1.6953 -6.8464 0.4204 42 1 0.3580 -4.7884 0.2387 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729685337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:21 Heat of formation + Delta-G solvation = 47.836224 kcal Electronic energy + Delta-G solvation = -24655.506021 eV Core-core repulsion = 20986.661682 eV Total energy + Delta-G solvation = -3668.844340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.97245 -40.76672 -39.12642 -38.38981 -36.20126 -34.30983 -34.05877 -32.10773 -31.74065 -30.88145 -30.02226 -27.58558 -26.45491 -24.56078 -23.92895 -23.58161 -22.46493 -22.11762 -21.89579 -19.81796 -18.98661 -18.81022 -17.86147 -17.27893 -16.44404 -16.27561 -16.18246 -15.97311 -15.68464 -15.63259 -15.40213 -15.31394 -14.81575 -14.76871 -14.56280 -14.30317 -14.11923 -13.57410 -13.42312 -13.03690 -12.82851 -12.75244 -12.55629 -12.40881 -12.24307 -12.18341 -12.13216 -11.93518 -11.66513 -11.15117 -10.96273 -10.78878 -9.74268 -9.42443 -9.24473 -9.01971 -8.86172 -8.46610 -6.14591 0.01965 0.55073 0.63796 0.72470 1.34670 1.44082 1.52365 1.88505 2.09264 2.18112 2.77690 2.89322 3.16302 3.40903 3.54722 3.66294 3.78068 3.96423 4.09007 4.12380 4.23067 4.29149 4.31954 4.46320 4.54278 4.55954 4.63355 4.70318 4.73758 4.81314 4.87213 4.89843 5.13131 5.14944 5.17895 5.33951 5.43574 5.54834 5.59614 5.67626 5.74630 5.85475 5.93793 6.04274 6.14740 6.29023 6.50246 6.53421 6.93078 6.98268 7.79980 8.76775 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015597 B = 0.002150 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.805687 B =13019.831098 C =13945.890269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.019 2.981 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.413 4.413 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.112 3.888 11 C -0.246 4.246 12 C -0.050 4.050 13 C -0.157 4.157 14 C 0.122 3.878 15 N -0.691 5.691 16 C 0.106 3.894 17 C -0.070 4.070 18 C -0.117 4.117 19 C -0.086 4.086 20 C 0.013 3.987 21 N -0.547 5.547 22 C 0.272 3.728 23 N -0.593 5.593 24 H 0.440 0.560 25 C 0.029 3.971 26 C -0.094 4.094 27 C -0.060 4.060 28 C -0.207 4.207 29 H 0.272 0.728 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.342 0.658 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.261 0.739 40 H 0.137 0.863 41 H 0.148 0.852 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.015 -19.774 8.884 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.265 4.265 12 C -0.069 4.069 13 C -0.158 4.158 14 C -0.005 4.005 15 N -0.323 5.323 16 C -0.022 4.022 17 C -0.072 4.072 18 C -0.137 4.137 19 C -0.106 4.106 20 C -0.104 4.104 21 N -0.267 5.267 22 C -0.015 4.015 23 N -0.206 5.206 24 H 0.282 0.718 25 C -0.081 4.081 26 C -0.115 4.115 27 C -0.078 4.078 28 C -0.226 4.226 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.154 0.846 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.160 0.840 35 H 0.107 0.893 36 H 0.074 0.926 37 H 0.163 0.837 38 H 0.149 0.851 39 H 0.276 0.724 40 H 0.155 0.845 41 H 0.166 0.834 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 18.725 -19.662 9.529 28.775 hybrid contribution -0.089 1.155 -0.719 1.364 sum 18.636 -18.506 8.809 27.702 Atomic orbital electron populations 1.70183 1.08013 1.28755 1.49049 1.26593 0.96870 1.02756 0.95950 0.84589 0.77772 0.74574 0.79284 1.18697 1.19599 1.17742 1.21806 0.92466 0.81508 1.53090 0.88226 1.83940 1.35990 1.12620 1.81547 1.19975 0.91663 0.87990 0.94242 1.21260 0.93090 1.00085 1.12069 1.20922 0.99667 0.90942 0.95354 1.19656 0.93202 0.95232 1.07684 1.20639 0.98522 0.92479 0.88900 1.60564 1.24992 1.36632 1.10116 1.20858 0.99335 0.91069 0.90968 1.19653 0.94028 0.97280 0.96256 1.20791 1.00122 0.99609 0.93225 1.20183 0.95392 1.00226 0.94803 1.19469 0.98050 1.02305 0.90626 1.70415 1.12135 1.24730 1.19471 1.26265 0.93564 0.91250 0.90394 1.43205 1.22706 1.45797 1.08846 0.71826 1.19092 0.92662 1.02635 0.93707 1.20018 0.99437 1.01698 0.90372 1.20921 0.93463 0.96823 0.96587 1.20454 0.99886 0.90673 1.11572 0.91872 0.86690 0.84588 0.89587 0.92981 0.83976 0.89257 0.92563 0.83665 0.85094 0.72363 0.84516 0.83414 0.87091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.29 13.67 21.61 0.30 -57.00 16 2 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 3 Si 1.02 43.38 29.55 68.60 2.03 45.41 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.41 -24.41 9.49 67.92 0.64 -23.77 16 8 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 9 O -0.23 -14.34 9.76 -22.82 -0.22 -14.56 16 10 C 0.11 5.63 6.65 22.58 0.15 5.78 16 11 C -0.25 -10.84 9.17 22.39 0.21 -10.63 16 12 C -0.05 -1.73 9.69 22.25 0.22 -1.51 16 13 C -0.16 -4.64 5.40 -19.83 -0.11 -4.75 16 14 C 0.12 2.50 5.81 85.56 0.50 3.00 16 15 N -0.69 -13.71 6.48 -521.96 -3.38 -17.10 16 16 C 0.11 1.59 5.80 85.56 0.50 2.09 16 17 C -0.07 -1.24 5.39 -19.82 -0.11 -1.35 16 18 C -0.12 -2.09 9.61 22.02 0.21 -1.88 16 19 C -0.09 -1.84 10.05 22.25 0.22 -1.62 16 20 C 0.01 0.31 7.23 39.45 0.29 0.60 16 21 N -0.55 -12.36 11.27 -192.04 -2.16 -14.52 16 22 C 0.27 3.57 12.97 180.05 2.34 5.91 16 23 N -0.59 -7.47 6.23 -191.12 -1.19 -8.66 16 24 H 0.44 2.28 8.96 -92.71 -0.83 1.44 16 25 C 0.03 0.58 7.31 38.86 0.28 0.86 16 26 C -0.09 -1.71 9.71 22.32 0.22 -1.50 16 27 C -0.06 -1.92 9.69 22.25 0.22 -1.70 16 28 C -0.21 -8.79 9.99 22.39 0.22 -8.57 16 29 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.12 5.20 5.64 -2.91 -0.02 5.18 16 31 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 32 H 0.09 1.58 8.08 -2.38 -0.02 1.56 16 33 H 0.05 0.89 8.08 -2.39 -0.02 0.87 16 34 H 0.34 7.17 8.71 -89.69 -0.78 6.39 16 35 H 0.09 1.18 8.08 -2.39 -0.02 1.17 16 36 H 0.06 0.69 8.08 -2.39 -0.02 0.67 16 37 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.26 0.48 8.06 -2.91 -0.02 0.46 16 40 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 41 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 42 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -80.94 363.29 1.28 -79.66 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.54 Total: 26.78 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 6.46 Total: -40.00 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -6.44 Total: -97.28 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.22 Total: -14.56 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -80.94 1.28 -79.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729685337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.492 kcal (2) G-P(sol) polarization free energy of solvation -80.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds