Wall clock time and date at job start Tue Mar 31 2020 14:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40470 * 119.85085 * 2 1 4 4 C 1.36028 * 119.69544 * 179.97438 * 3 2 1 5 5 C 1.40941 * 119.32473 * 359.97438 * 4 3 2 6 6 N 1.32553 * 132.32656 * 180.35551 * 5 4 3 7 7 C 1.33518 * 109.16005 * 180.12754 * 6 5 4 8 8 C 1.50694 * 125.68972 * 179.83014 * 7 6 5 9 9 N 1.46505 * 109.46872 * 274.69448 * 8 7 6 10 10 C 1.39676 * 120.00079 * 180.02562 * 9 8 7 11 11 C 1.39012 * 120.03933 * 359.97201 * 10 9 8 12 12 C 1.38143 * 120.06228 * 180.02562 * 11 10 9 13 13 C 1.38174 * 120.14227 * 359.72769 * 12 11 10 14 14 C 1.38912 * 120.07871 * 0.55434 * 13 12 11 15 15 O 1.35751 * 120.03093 * 179.72008 * 14 13 12 16 16 C 1.34833 * 117.00044 * 174.18559 * 15 14 13 17 17 H 1.08001 * 119.99756 * 5.05336 * 16 15 14 18 18 C 1.38647 * 120.00273 * 185.05790 * 16 15 14 19 19 N 1.31562 * 119.99649 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00109 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47261 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46962 * 119.99922 * 20 18 16 23 23 H 1.48505 * 109.47000 * 239.99558 * 20 18 16 24 24 C 1.38746 * 120.04204 * 179.97438 * 10 9 8 25 25 C 1.35102 * 108.62394 * 359.56251 * 7 6 5 26 26 N 1.36838 * 107.18034 * 0.26512 * 25 7 6 27 27 C 1.34957 * 119.85193 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47417 * 269.97789 * 1 2 3 29 29 H 1.09005 * 109.47018 * 29.97937 * 1 2 3 30 30 H 1.08996 * 109.47456 * 149.97425 * 1 2 3 31 31 H 1.08001 * 120.15694 * 0.02800 * 3 2 1 32 32 H 1.07994 * 120.33927 * 180.02562 * 4 3 2 33 33 H 1.08993 * 109.47440 * 154.69081 * 8 7 6 34 34 H 1.09004 * 109.46978 * 34.68818 * 8 7 6 35 35 H 0.96996 * 120.00220 * 359.97438 * 9 8 7 36 36 H 1.08000 * 119.96455 * 0.04793 * 11 10 9 37 37 H 1.08004 * 119.93082 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.96054 * 180.29241 * 13 12 11 39 39 H 0.96998 * 119.99725 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.07071 * 359.97438 * 24 10 9 41 41 H 1.07999 * 126.41007 * 180.28088 * 25 7 6 42 42 H 1.07999 * 119.69125 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.2183 0.0000 4 6 3.5664 1.2146 0.0005 5 6 4.2533 -0.0160 0.0016 6 7 5.5441 -0.3178 0.0084 7 6 5.6837 -1.6456 0.0033 8 6 6.9929 -2.3919 0.0045 9 7 7.4777 -2.5297 -1.3711 10 6 8.6816 -3.1911 -1.6243 11 6 9.4208 -3.7183 -0.5716 12 6 10.6118 -4.3720 -0.8215 13 6 11.0694 -4.5089 -2.1181 14 6 10.3385 -3.9792 -3.1739 15 8 10.7918 -4.1093 -4.4469 16 6 9.9786 -3.6804 -5.4331 17 1 9.0515 -3.1825 -5.1903 18 6 10.3326 -3.8786 -6.7589 19 7 11.4622 -4.4847 -7.0546 20 14 9.2055 -3.2850 -8.1253 21 1 8.0062 -2.6403 -7.5327 22 1 9.9290 -2.3025 -8.9718 23 1 8.7854 -4.4409 -8.9576 24 6 9.1413 -3.3225 -2.9268 25 6 4.4556 -2.2086 0.0028 26 7 3.5434 -1.1886 0.0017 27 6 2.1787 -1.1705 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6663 2.1537 0.0005 32 1 4.1144 2.1452 0.0010 33 1 6.8470 -3.3807 0.4392 34 1 7.7250 -1.8402 0.5942 35 1 6.9623 -2.1624 -2.1061 36 1 9.0633 -3.6170 0.4424 37 1 11.1846 -4.7805 -0.0020 38 1 11.9986 -5.0247 -2.3105 39 1 11.7100 -4.6230 -7.9822 40 1 8.5689 -2.9142 -3.7465 41 1 4.2351 -3.2658 0.0034 42 1 1.6313 -2.1015 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760450166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:47 Heat of formation + Delta-G solvation = 92.547383 kcal Electronic energy + Delta-G solvation = -24969.916171 eV Core-core repulsion = 21303.010652 eV Total energy + Delta-G solvation = -3666.905518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.09288 -38.99914 -38.30269 -36.90168 -34.74900 -33.87788 -32.53139 -32.08831 -30.18062 -28.89175 -28.22205 -27.15184 -25.41214 -25.14890 -23.55527 -22.42002 -21.74399 -20.94658 -20.18526 -18.14899 -17.76012 -17.27876 -17.06446 -16.21771 -15.85719 -15.37123 -15.02737 -14.95613 -14.61745 -14.37333 -14.15359 -13.92237 -13.75827 -13.66970 -13.27427 -13.08706 -12.84714 -12.62658 -12.51363 -12.15433 -11.97639 -11.66342 -11.56601 -11.34240 -11.29387 -10.92118 -10.70493 -10.51776 -10.33142 -10.28944 -9.33852 -9.30742 -8.94067 -8.69720 -8.15010 -7.26734 -6.68987 -6.34949 -3.93679 0.38178 0.92565 2.27051 2.43925 2.46577 2.65367 3.16685 3.18328 3.18953 3.24440 3.83750 3.98097 4.04831 4.14606 4.26942 4.37073 4.59179 4.77647 4.81841 4.95982 5.03271 5.05861 5.09950 5.22346 5.40587 5.43921 5.47563 5.58807 5.63281 5.76844 5.80063 5.84293 6.06842 6.14999 6.31902 6.35806 6.44579 6.71493 6.73682 6.76333 7.12160 7.23171 7.46906 7.57151 7.64326 7.75161 8.09614 8.12174 8.28733 9.11626 9.85024 10.83682 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012988 B = 0.002577 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.306397 B =10862.673820 C =12522.304131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.110 4.110 3 C -0.102 4.102 4 C -0.072 4.072 5 C 0.217 3.783 6 N -0.475 5.475 7 C 0.050 3.950 8 C 0.214 3.786 9 N -0.748 5.748 10 C 0.252 3.748 11 C -0.279 4.279 12 C -0.040 4.040 13 C -0.237 4.237 14 C 0.190 3.810 15 O -0.180 6.180 16 C -0.386 4.386 17 H 0.091 0.909 18 C 0.037 3.963 19 N -0.865 5.865 20 Si 0.939 3.061 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.301 4.301 25 C -0.077 4.077 26 N -0.361 5.361 27 C 0.051 3.949 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.396 0.604 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.268 0.732 40 H 0.123 0.877 41 H 0.185 0.815 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.888 8.038 16.109 29.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.113 4.113 3 C -0.126 4.126 4 C -0.092 4.092 5 C -0.027 4.027 6 N -0.194 5.194 7 C -0.083 4.083 8 C 0.089 3.911 9 N -0.380 5.380 10 C 0.150 3.850 11 C -0.302 4.302 12 C -0.059 4.059 13 C -0.257 4.257 14 C 0.135 3.865 15 O -0.083 6.083 16 C -0.463 4.463 17 H 0.108 0.892 18 C -0.166 4.166 19 N -0.501 5.501 20 Si 0.764 3.236 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.203 1.203 24 C -0.325 4.325 25 C -0.210 4.210 26 N -0.032 5.032 27 C -0.071 4.071 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.160 0.840 32 H 0.170 0.830 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.229 0.771 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.078 0.922 40 H 0.141 0.859 41 H 0.202 0.798 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -21.908 8.354 16.014 28.394 hybrid contribution -1.522 -0.132 -0.994 1.823 sum -23.430 8.222 15.020 29.020 Atomic orbital electron populations 1.20679 0.88989 1.03548 1.02893 1.19481 0.97270 0.91714 1.02874 1.20972 0.93361 0.98134 1.00151 1.20304 0.93636 0.94871 1.00395 1.21003 0.87520 0.87457 1.06704 1.70695 1.13214 1.14095 1.21439 1.20894 0.94548 0.89832 1.03033 1.19355 0.88812 0.97284 0.85657 1.44450 1.23290 1.64127 1.06153 1.17440 0.84610 0.89794 0.93113 1.20076 0.99898 1.13687 0.96556 1.20370 0.94526 0.95850 0.95125 1.20036 1.03430 1.11200 0.91062 1.19064 0.90654 0.90616 0.86152 1.83986 1.42001 1.72045 1.10249 1.21343 1.03073 1.37743 0.84130 0.89187 1.25257 0.97131 0.96848 0.97391 1.70056 1.21360 1.39523 1.19176 0.85680 0.79303 0.78434 0.80179 1.19273 1.20224 1.20250 1.20494 1.01863 1.15116 0.94982 1.22535 0.87891 0.93856 1.16681 1.42781 1.05956 1.08898 1.45542 1.21409 0.80880 1.00446 1.04400 0.90645 0.90659 0.91151 0.83997 0.83019 0.91007 0.90915 0.77063 0.87759 0.87180 0.86942 0.92247 0.85887 0.79757 0.82106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.34 10.00 36.00 0.36 0.02 16 2 C -0.11 -0.70 5.85 -104.95 -0.61 -1.31 16 3 C -0.10 -0.69 9.74 -39.53 -0.38 -1.07 16 4 C -0.07 -0.67 10.11 -39.35 -0.40 -1.06 16 5 C 0.22 2.71 7.81 -156.04 -1.22 1.49 16 6 N -0.47 -7.06 11.32 -9.01 -0.10 -7.16 16 7 C 0.05 0.67 6.43 -82.98 -0.53 0.14 16 8 C 0.21 2.92 5.44 -5.19 -0.03 2.89 16 9 N -0.75 -12.36 5.72 -59.83 -0.34 -12.70 16 10 C 0.25 4.96 6.65 -83.81 -0.56 4.40 16 11 C -0.28 -5.15 9.31 -39.33 -0.37 -5.52 16 12 C -0.04 -0.75 10.03 -39.64 -0.40 -1.15 16 13 C -0.24 -5.31 9.99 -39.36 -0.39 -5.70 16 14 C 0.19 4.84 6.64 -39.14 -0.26 4.58 16 15 O -0.18 -5.34 9.76 0.04 0.00 -5.34 16 16 C -0.39 -11.22 9.49 30.88 0.29 -10.92 16 17 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.87 -26.12 13.67 55.48 0.76 -25.36 16 20 Si 0.94 21.28 29.55 -169.99 -5.02 16.26 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 C -0.30 -6.96 9.01 -39.20 -0.35 -7.31 16 25 C -0.08 -0.86 11.66 -16.43 -0.19 -1.05 16 26 N -0.36 -3.89 2.94 -62.66 -0.18 -4.07 16 27 C 0.05 0.38 10.56 -16.65 -0.18 0.21 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.19 8.09 -51.93 -0.42 -0.23 16 30 H 0.07 0.18 8.07 -51.93 -0.42 -0.24 16 31 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 32 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 34 H 0.07 1.03 7.95 -51.93 -0.41 0.62 16 35 H 0.40 6.55 8.47 -40.82 -0.35 6.20 16 36 H 0.10 1.63 6.73 -52.49 -0.35 1.28 16 37 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.11 2.44 8.06 -52.48 -0.42 2.02 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.12 2.90 5.64 -52.49 -0.30 2.60 16 41 H 0.19 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -35.22 361.37 -9.79 -45.00 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.03 Total: 8.33 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -5.31 Total: -20.41 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.13 Total: -49.29 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: 0.00 Total: -5.34 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.22 -9.79 -45.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760450166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.552 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds