Wall clock time and date at job start Tue Mar 31 2020 13:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86801 * 120.00108 * 2 1 4 4 H 1.48502 * 109.46714 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47296 * 119.99782 * 3 2 1 6 6 H 1.48492 * 109.47604 * 240.00542 * 3 2 1 7 7 C 1.39948 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00133 * 154.82709 * 7 2 1 9 9 C 1.41400 * 119.99861 * 334.83203 * 7 2 1 10 10 C 1.40726 * 120.24257 * 334.81274 * 9 7 2 11 11 C 1.37593 * 119.74535 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24863 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.49957 * 359.97438 * 12 11 10 14 14 C 1.37646 * 120.24827 * 359.68019 * 13 12 11 15 15 C 1.50695 * 120.12645 * 180.31744 * 14 13 12 16 16 C 1.50697 * 109.46921 * 265.30012 * 15 14 13 17 17 O 1.21288 * 120.00173 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99902 * 180.02562 * 16 15 14 19 19 C 1.39974 * 120.00131 * 175.49121 * 18 16 15 20 20 C 1.39231 * 120.87190 * 214.58145 * 19 18 16 21 21 N 1.32278 * 119.01945 * 179.76408 * 20 19 18 22 22 C 1.31801 * 120.88474 * 0.52291 * 21 20 19 23 23 C 1.50696 * 119.03292 * 179.70537 * 22 21 20 24 24 C 1.52999 * 117.49974 * 8.64354 * 23 22 21 25 25 C 1.52995 * 117.49866 * 300.01746 * 23 22 21 26 26 N 1.31793 * 121.92312 * 359.72770 * 22 21 20 27 27 C 1.32265 * 120.89812 * 359.97438 * 26 22 21 28 28 H 0.97001 * 119.99416 * 174.65388 * 1 2 3 29 29 H 1.08001 * 120.12787 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.87968 * 180.02562 * 11 10 9 31 31 H 1.07996 * 119.75123 * 179.97438 * 12 11 10 32 32 H 1.07999 * 119.87141 * 179.97438 * 13 12 11 33 33 H 1.09001 * 109.47466 * 25.29969 * 15 14 13 34 34 H 1.09002 * 109.46987 * 145.30432 * 15 14 13 35 35 H 0.97002 * 120.00549 * 355.49497 * 18 16 15 36 36 H 1.07999 * 120.49498 * 359.97438 * 20 19 18 37 37 H 1.08999 * 115.55141 * 154.34861 * 23 22 21 38 38 H 1.08999 * 117.50045 * 359.97438 * 24 23 22 39 39 H 1.09004 * 117.49519 * 145.02480 * 24 23 22 40 40 H 1.09001 * 117.49931 * 214.97641 * 25 23 22 41 41 H 1.09000 * 117.50531 * 0.02562 * 25 23 22 42 42 H 1.07997 * 120.49061 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2771 2.7464 0.0006 5 1 3.0959 1.6964 1.2125 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0111 -1.2561 -0.3984 9 6 1.4017 -2.3786 0.5197 10 6 0.3808 -2.2776 1.4830 11 6 -0.2017 -3.4196 1.9827 12 6 0.2140 -4.6665 1.5411 13 6 1.2187 -4.7779 0.5926 14 6 1.8106 -3.6488 0.0736 15 6 2.8977 -3.7729 -0.9626 16 6 4.2435 -3.7372 -0.2855 17 8 4.3131 -3.6228 0.9199 18 7 5.3698 -3.8325 -1.0195 19 6 6.6199 -3.7048 -0.4029 20 6 7.6856 -3.1025 -1.0663 21 7 8.8497 -2.9968 -0.4472 22 6 9.0102 -3.4614 0.7758 23 6 10.3564 -3.3248 1.4392 24 6 11.4100 -2.4715 0.7303 25 6 11.5511 -3.9947 0.7576 26 7 8.0280 -4.0423 1.4351 27 6 6.8318 -4.1815 0.8880 28 1 -0.4849 -0.8364 -0.0783 29 1 0.0564 -1.3074 1.8293 30 1 -0.9857 -3.3445 2.7218 31 1 -0.2485 -5.5576 1.9390 32 1 1.5348 -5.7542 0.2561 33 1 2.7846 -4.7164 -1.4967 34 1 2.8237 -2.9450 -1.6678 35 1 5.3143 -3.9896 -1.9751 36 1 7.5627 -2.7240 -2.0703 37 1 10.3437 -3.3067 2.5290 38 1 11.1297 -2.0092 -0.2162 39 1 12.0908 -1.8917 1.3537 40 1 12.3247 -4.4170 1.3990 41 1 11.3636 -4.5340 -0.1709 42 1 6.0317 -4.6589 1.4341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776894124.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:32 Heat of formation + Delta-G solvation = 51.973804 kcal Electronic energy + Delta-G solvation = -25954.006710 eV Core-core repulsion = 22285.341789 eV Total energy + Delta-G solvation = -3668.664921 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.36262 -39.59649 -37.78212 -37.08775 -34.90007 -33.92160 -33.68994 -32.11018 -30.21898 -29.27607 -27.09263 -25.23931 -24.87691 -24.36313 -22.52512 -21.69241 -21.00277 -20.78850 -19.82881 -18.16128 -17.68508 -17.44987 -17.00378 -16.31269 -15.35887 -15.21493 -14.98936 -14.69716 -14.26888 -14.18476 -14.02171 -13.69251 -13.60341 -13.48650 -12.42159 -12.33368 -12.10681 -11.87473 -11.74145 -11.57011 -11.45838 -11.27851 -11.19071 -10.92659 -10.82896 -10.65722 -10.53074 -10.42878 -10.40534 -9.73821 -9.63127 -9.44694 -9.17949 -9.01878 -8.32820 -7.63688 -7.57552 -7.18949 -4.49697 0.79328 1.06135 2.60866 2.79413 2.89376 3.12365 3.15051 3.25101 3.33988 3.44327 3.77937 3.91623 3.97602 4.17356 4.47292 4.53700 4.69927 4.82369 4.86187 4.95349 5.13470 5.31308 5.44506 5.52761 5.62535 5.75386 5.76101 5.87977 5.94375 6.03813 6.05737 6.09478 6.21573 6.29288 6.54620 6.60461 6.93540 6.97946 7.13542 7.32587 7.40098 7.63760 7.76003 7.78049 7.89197 8.08101 8.13676 8.27427 8.38694 8.70626 8.85699 10.01525 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.003395 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.911124 B = 8245.596142 C = 9498.209106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.041 3.959 3 Si 1.058 2.942 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.071 0.929 9 C 0.117 3.883 10 C -0.216 4.216 11 C -0.084 4.084 12 C -0.253 4.253 13 C -0.066 4.066 14 C -0.193 4.193 15 C -0.065 4.065 16 C 0.514 3.486 17 O -0.497 6.497 18 N -0.676 5.676 19 C 0.053 3.947 20 C 0.120 3.880 21 N -0.499 5.499 22 C 0.316 3.684 23 C -0.096 4.096 24 C -0.155 4.155 25 C -0.158 4.158 26 N -0.495 5.495 27 C 0.150 3.850 28 H 0.300 0.700 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.412 0.588 36 H 0.170 0.830 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.135 -5.614 -5.040 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.181 4.181 3 Si 0.882 3.118 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.089 0.911 9 C 0.114 3.886 10 C -0.235 4.235 11 C -0.102 4.102 12 C -0.272 4.272 13 C -0.084 4.084 14 C -0.195 4.195 15 C -0.104 4.104 16 C 0.303 3.697 17 O -0.368 6.368 18 N -0.324 5.324 19 C -0.047 4.047 20 C -0.049 4.049 21 N -0.213 5.213 22 C 0.049 3.951 23 C -0.116 4.116 24 C -0.193 4.193 25 C -0.196 4.196 26 N -0.208 5.208 27 C -0.019 4.019 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.248 0.752 36 H 0.187 0.813 37 H 0.145 0.855 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 15.677 -3.768 -3.667 16.535 hybrid contribution -0.863 -1.836 -0.860 2.204 sum 14.814 -5.604 -4.527 16.473 Atomic orbital electron populations 1.70460 1.08177 1.34328 1.28912 1.26920 0.95667 1.04165 0.91365 0.83725 0.75789 0.74206 0.78050 1.19720 1.20042 1.20195 1.20438 1.02508 0.94034 1.37454 0.91118 1.17383 0.90251 0.91758 0.89206 1.21157 1.03367 0.97061 1.01887 1.20629 0.98170 0.93222 0.98204 1.20276 1.04769 0.95862 1.06322 1.20360 0.95995 0.95746 0.96311 1.18928 1.02956 0.93640 1.03977 1.20241 0.88616 1.03057 0.98513 1.21728 0.85633 0.74219 0.88107 1.90695 1.86604 1.45045 1.14473 1.43759 1.03071 1.73089 1.12449 1.19664 0.88147 1.00092 0.96838 1.23047 0.87635 0.93599 1.00613 1.67999 1.24156 1.18494 1.10622 1.22001 0.94165 0.91806 0.87106 1.20550 0.84390 1.07960 0.98666 1.23012 0.99813 0.93402 1.03060 1.22968 0.98256 0.96072 1.02331 1.68169 1.00143 1.15484 1.37021 1.23591 0.93805 0.92775 0.91746 0.88630 0.87679 0.89286 0.89343 0.89497 0.89941 0.88050 0.75200 0.81312 0.85463 0.87252 0.88284 0.88082 0.88696 0.80081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.67 12.32 55.55 0.68 -19.98 16 2 C 0.04 1.02 4.95 -17.34 -0.09 0.94 16 3 Si 1.06 21.74 30.00 -169.99 -5.10 16.64 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.52 -13.18 8.09 -37.74 -0.31 -13.49 16 8 H 0.07 1.76 6.72 -52.48 -0.35 1.41 16 9 C 0.12 2.99 5.31 -106.83 -0.57 2.42 16 10 C -0.22 -5.53 7.93 -38.88 -0.31 -5.84 16 11 C -0.08 -1.96 10.02 -39.66 -0.40 -2.35 16 12 C -0.25 -5.62 10.05 -39.29 -0.39 -6.01 16 13 C -0.07 -1.43 9.66 -39.66 -0.38 -1.81 16 14 C -0.19 -4.36 4.43 -103.91 -0.46 -4.82 16 15 C -0.06 -1.14 5.18 -29.04 -0.15 -1.29 16 16 C 0.51 9.08 7.32 -10.99 -0.08 9.00 16 17 O -0.50 -10.96 13.54 5.55 0.08 -10.88 16 18 N -0.68 -8.90 5.36 -9.68 -0.05 -8.95 16 19 C 0.05 0.75 6.35 -83.40 -0.53 0.22 16 20 C 0.12 1.51 11.26 -16.99 -0.19 1.31 16 21 N -0.50 -6.84 9.33 -10.58 -0.10 -6.93 16 22 C 0.32 4.56 7.31 -157.19 -1.15 3.41 16 23 C -0.10 -1.08 6.23 -91.78 -0.57 -1.65 16 24 C -0.16 -1.42 10.01 -26.73 -0.27 -1.69 16 25 C -0.16 -1.40 10.23 -26.73 -0.27 -1.68 16 26 N -0.50 -7.99 10.32 -10.58 -0.11 -8.10 16 27 C 0.15 2.44 9.98 -16.99 -0.17 2.27 16 28 H 0.30 7.95 6.62 -40.82 -0.27 7.68 16 29 H 0.11 2.79 6.46 -52.49 -0.34 2.45 16 30 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 34 H 0.10 1.76 7.06 -51.93 -0.37 1.40 16 35 H 0.41 3.71 8.83 -40.82 -0.36 3.35 16 36 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.11 1.10 7.53 -51.93 -0.39 0.71 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.18 3.15 6.33 -52.49 -0.33 2.82 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -31.13 358.91 -10.49 -41.61 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.01 Total: 12.26 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -6.29 Total: -21.06 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.42 Total: -43.98 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.10 Total: 16.64 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.13 -10.49 -41.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776894124.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.586 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds