Wall clock time and date at job start Tue Mar 31 2020 13:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86801 * 120.00108 * 2 1 4 4 H 1.48502 * 109.46714 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47296 * 119.99782 * 3 2 1 6 6 H 1.48492 * 109.47604 * 240.00542 * 3 2 1 7 7 C 1.39948 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00133 * 154.82709 * 7 2 1 9 9 C 1.41400 * 119.99861 * 334.83203 * 7 2 1 10 10 C 1.40726 * 120.24257 * 334.81274 * 9 7 2 11 11 C 1.37593 * 119.74535 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24863 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.49957 * 359.97438 * 12 11 10 14 14 C 1.37646 * 120.24827 * 359.68019 * 13 12 11 15 15 C 1.50695 * 120.12645 * 180.31744 * 14 13 12 16 16 C 1.50697 * 109.46921 * 265.30012 * 15 14 13 17 17 O 1.21288 * 120.00173 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99902 * 180.02562 * 16 15 14 19 19 C 1.39974 * 120.00131 * 175.49121 * 18 16 15 20 20 C 1.39231 * 120.87190 * 214.58145 * 19 18 16 21 21 N 1.32278 * 119.01945 * 179.76408 * 20 19 18 22 22 C 1.31801 * 120.88474 * 0.52291 * 21 20 19 23 23 C 1.50696 * 119.03292 * 179.70537 * 22 21 20 24 24 C 1.52999 * 117.49974 * 8.64354 * 23 22 21 25 25 C 1.52995 * 117.49866 * 300.01746 * 23 22 21 26 26 N 1.31793 * 121.92312 * 359.72770 * 22 21 20 27 27 C 1.32265 * 120.89812 * 359.97438 * 26 22 21 28 28 H 0.97001 * 119.99416 * 174.65388 * 1 2 3 29 29 H 1.08001 * 120.12787 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.87968 * 180.02562 * 11 10 9 31 31 H 1.07996 * 119.75123 * 179.97438 * 12 11 10 32 32 H 1.07999 * 119.87141 * 179.97438 * 13 12 11 33 33 H 1.09001 * 109.47466 * 25.29969 * 15 14 13 34 34 H 1.09002 * 109.46987 * 145.30432 * 15 14 13 35 35 H 0.97002 * 120.00549 * 355.49497 * 18 16 15 36 36 H 1.07999 * 120.49498 * 359.97438 * 20 19 18 37 37 H 1.08999 * 115.55141 * 154.34861 * 23 22 21 38 38 H 1.08999 * 117.50045 * 359.97438 * 24 23 22 39 39 H 1.09004 * 117.49519 * 145.02480 * 24 23 22 40 40 H 1.09001 * 117.49931 * 214.97641 * 25 23 22 41 41 H 1.09000 * 117.50531 * 0.02562 * 25 23 22 42 42 H 1.07997 * 120.49061 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2771 2.7464 0.0006 5 1 3.0959 1.6964 1.2125 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0111 -1.2561 -0.3984 9 6 1.4017 -2.3786 0.5197 10 6 0.3808 -2.2776 1.4830 11 6 -0.2017 -3.4196 1.9827 12 6 0.2140 -4.6665 1.5411 13 6 1.2187 -4.7779 0.5926 14 6 1.8106 -3.6488 0.0736 15 6 2.8977 -3.7729 -0.9626 16 6 4.2435 -3.7372 -0.2855 17 8 4.3131 -3.6228 0.9199 18 7 5.3698 -3.8325 -1.0195 19 6 6.6199 -3.7048 -0.4029 20 6 7.6856 -3.1025 -1.0663 21 7 8.8497 -2.9968 -0.4472 22 6 9.0102 -3.4614 0.7758 23 6 10.3564 -3.3248 1.4392 24 6 11.4100 -2.4715 0.7303 25 6 11.5511 -3.9947 0.7576 26 7 8.0280 -4.0423 1.4351 27 6 6.8318 -4.1815 0.8880 28 1 -0.4849 -0.8364 -0.0783 29 1 0.0564 -1.3074 1.8293 30 1 -0.9857 -3.3445 2.7218 31 1 -0.2485 -5.5576 1.9390 32 1 1.5348 -5.7542 0.2561 33 1 2.7846 -4.7164 -1.4967 34 1 2.8237 -2.9450 -1.6678 35 1 5.3143 -3.9896 -1.9751 36 1 7.5627 -2.7240 -2.0703 37 1 10.3437 -3.3067 2.5290 38 1 11.1297 -2.0092 -0.2162 39 1 12.0908 -1.8917 1.3537 40 1 12.3247 -4.4170 1.3990 41 1 11.3636 -4.5340 -0.1709 42 1 6.0317 -4.6589 1.4341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776894124.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:31 Heat of formation + Delta-G solvation = 34.404163 kcal Electronic energy + Delta-G solvation = -25954.768587 eV Core-core repulsion = 22285.341789 eV Total energy + Delta-G solvation = -3669.426797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.48233 -40.95578 -39.45311 -37.99633 -36.14002 -35.75822 -34.79739 -33.70315 -31.43941 -31.09942 -28.62644 -26.91050 -26.11232 -25.50230 -23.21716 -22.90312 -22.81642 -22.03991 -21.35599 -19.73789 -19.11293 -18.57571 -18.07975 -17.56492 -16.82465 -16.63166 -16.23907 -16.00654 -15.88184 -15.58505 -15.24075 -15.06356 -15.00936 -14.69199 -14.22947 -13.88615 -13.58901 -13.24894 -13.01712 -12.91514 -12.63773 -12.62162 -12.40572 -12.31140 -12.25910 -12.01655 -11.96148 -11.50684 -11.41976 -11.34129 -11.23713 -11.04456 -10.85897 -10.32093 -9.47038 -9.45210 -9.42840 -9.07414 -6.41725 -0.30720 -0.04781 0.87241 0.98053 1.44894 1.54818 1.59720 1.73124 1.93197 2.28153 2.49226 2.70205 2.81462 2.95688 3.22719 3.39105 3.55437 3.77093 3.90143 3.94878 4.06182 4.13890 4.27701 4.29689 4.40813 4.48440 4.56778 4.69820 4.73009 4.79393 4.86082 4.96786 5.04567 5.06913 5.16562 5.31116 5.32393 5.42054 5.48394 5.78092 5.82847 5.87444 5.97014 6.04773 6.26891 6.32598 6.44429 6.83540 6.98317 7.01110 7.11888 8.07625 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.003395 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.911124 B = 8245.596142 C = 9498.209106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.006 3.994 3 Si 1.103 2.897 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.250 1.250 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.087 3.913 10 C -0.247 4.247 11 C -0.096 4.096 12 C -0.252 4.252 13 C -0.076 4.076 14 C -0.193 4.193 15 C -0.063 4.063 16 C 0.518 3.482 17 O -0.549 6.549 18 N -0.651 5.651 19 C 0.041 3.959 20 C 0.137 3.863 21 N -0.503 5.503 22 C 0.310 3.690 23 C -0.125 4.125 24 C -0.143 4.143 25 C -0.141 4.141 26 N -0.521 5.521 27 C 0.130 3.870 28 H 0.285 0.715 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.105 0.895 35 H 0.435 0.565 36 H 0.212 0.788 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.473 -6.432 -6.930 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.211 4.211 3 Si 0.921 3.079 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.174 1.174 7 C -0.568 4.568 8 H 0.089 0.911 9 C 0.084 3.916 10 C -0.267 4.267 11 C -0.115 4.115 12 C -0.271 4.271 13 C -0.094 4.094 14 C -0.195 4.195 15 C -0.102 4.102 16 C 0.308 3.692 17 O -0.425 6.425 18 N -0.300 5.300 19 C -0.059 4.059 20 C -0.033 4.033 21 N -0.216 5.216 22 C 0.044 3.956 23 C -0.145 4.145 24 C -0.181 4.181 25 C -0.179 4.179 26 N -0.235 5.235 27 C -0.038 4.038 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.123 0.877 35 H 0.275 0.725 36 H 0.228 0.772 37 H 0.146 0.854 38 H 0.119 0.881 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.108 0.892 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 18.033 -4.618 -5.611 19.442 hybrid contribution -1.538 -1.761 -0.240 2.350 sum 16.495 -6.378 -5.852 18.628 Atomic orbital electron populations 1.70553 1.08888 1.33328 1.31546 1.28118 0.95729 1.07051 0.90187 0.83174 0.74989 0.70916 0.78776 1.19411 1.20618 1.17357 1.20543 1.02593 0.94806 1.38894 0.91149 1.17774 0.90754 0.93406 0.89666 1.21159 1.05132 0.96908 1.03491 1.20904 0.98638 0.93272 0.98647 1.20729 1.04382 0.96253 1.05707 1.20837 0.95498 0.97206 0.95878 1.19458 1.03310 0.92753 1.03957 1.20276 0.87137 1.05554 0.97279 1.21588 0.86577 0.73581 0.87433 1.90696 1.87335 1.47745 1.16679 1.43327 1.01706 1.71714 1.13232 1.19659 0.88786 1.00983 0.96430 1.23701 0.86360 0.91539 1.01704 1.68141 1.24493 1.18595 1.10411 1.22617 0.94847 0.90748 0.87435 1.20722 0.83866 1.10984 0.98892 1.23089 0.98612 0.93820 1.02532 1.23060 0.96914 0.96014 1.01951 1.68158 1.00581 1.16798 1.37977 1.23419 0.93726 0.93796 0.92876 0.90215 0.90057 0.87523 0.86415 0.85833 0.85536 0.87676 0.72481 0.77197 0.85381 0.88052 0.86123 0.85768 0.89180 0.82117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.32 12.32 21.83 0.27 -44.05 16 2 C 0.01 0.30 4.95 85.26 0.42 0.72 16 3 Si 1.10 44.30 30.00 68.60 2.06 46.35 16 4 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 7 C -0.54 -28.24 8.09 23.46 0.19 -28.05 16 8 H 0.07 3.56 6.72 -2.91 -0.02 3.54 16 9 C 0.09 4.54 5.31 -21.29 -0.11 4.43 16 10 C -0.25 -13.23 7.93 22.73 0.18 -13.05 16 11 C -0.10 -4.56 10.02 22.22 0.22 -4.33 16 12 C -0.25 -10.83 10.05 22.46 0.23 -10.61 16 13 C -0.08 -3.16 9.66 22.22 0.21 -2.95 16 14 C -0.19 -8.59 4.43 -19.41 -0.09 -8.68 16 15 C -0.06 -2.10 5.18 29.10 0.15 -1.95 16 16 C 0.52 17.69 7.32 87.66 0.64 18.33 16 17 O -0.55 -24.51 13.54 -3.05 -0.04 -24.55 16 18 N -0.65 -15.72 5.36 -302.92 -1.62 -17.35 16 19 C 0.04 1.12 6.35 38.32 0.24 1.37 16 20 C 0.14 3.06 11.26 84.86 0.96 4.02 16 21 N -0.50 -12.81 9.33 -187.38 -1.75 -14.56 16 22 C 0.31 8.70 7.31 138.75 1.01 9.71 16 23 C -0.12 -2.66 6.23 -11.54 -0.07 -2.73 16 24 C -0.14 -2.28 10.01 30.60 0.31 -1.98 16 25 C -0.14 -2.17 10.23 30.59 0.31 -1.86 16 26 N -0.52 -17.03 10.32 -187.39 -1.93 -18.97 16 27 C 0.13 4.27 9.98 84.87 0.85 5.12 16 28 H 0.29 15.98 6.62 -92.71 -0.61 15.36 16 29 H 0.08 4.61 6.46 -2.91 -0.02 4.60 16 30 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 31 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.12 4.18 8.06 -2.91 -0.02 4.15 16 33 H 0.13 3.05 8.06 -2.39 -0.02 3.03 16 34 H 0.11 3.46 7.06 -2.39 -0.02 3.45 16 35 H 0.43 6.29 8.83 -92.71 -0.82 5.48 16 36 H 0.21 2.82 8.06 -2.91 -0.02 2.79 16 37 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.10 1.81 7.53 -2.39 -0.02 1.79 16 39 H 0.12 1.39 8.14 -2.39 -0.02 1.38 16 40 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.16 5.89 6.33 -2.91 -0.02 5.87 16 Total: -1.00 -71.81 358.91 3.04 -68.77 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: 0.41 Total: 36.86 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 5.66 Total: -32.50 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -5.04 Total: -94.93 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.04 Total: -24.55 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.06 Total: 46.35 kcal Total: -71.81 3.04 -68.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776894124.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.172 kcal (2) G-P(sol) polarization free energy of solvation -71.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds