Wall clock time and date at job start Tue Mar 31 2020 13:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86799 * 119.99693 * 2 1 4 4 H 1.48499 * 109.46802 * 272.52032 * 3 2 1 5 5 H 1.48498 * 109.47467 * 32.52180 * 3 2 1 6 6 H 1.48504 * 109.47035 * 152.52521 * 3 2 1 7 7 C 1.39941 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00283 * 347.43053 * 7 2 1 9 9 C 1.41400 * 120.00109 * 167.42201 * 7 2 1 10 10 C 1.40727 * 120.24222 * 328.62582 * 9 7 2 11 11 C 1.37595 * 119.74535 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24601 * 359.72424 * 11 10 9 13 13 C 1.38612 * 120.50184 * 0.55331 * 12 11 10 14 14 C 1.37640 * 120.24645 * 359.44534 * 13 12 11 15 15 C 1.50698 * 120.12426 * 180.29529 * 14 13 12 16 16 C 1.50698 * 109.47262 * 264.99931 * 15 14 13 17 17 O 1.21274 * 120.00237 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99761 * 180.02562 * 16 15 14 19 19 C 1.39448 * 119.99742 * 175.12874 * 18 16 15 20 20 C 1.39386 * 120.14635 * 185.19964 * 19 18 16 21 21 C 1.38621 * 117.90781 * 179.97438 * 20 19 18 22 22 C 1.38776 * 118.03242 * 359.97438 * 21 20 19 23 23 C 1.50703 * 119.99796 * 180.02562 * 22 21 20 24 24 C 1.53000 * 117.49879 * 343.62264 * 23 22 21 25 25 C 1.53001 * 60.00279 * 252.51281 * 24 23 22 26 26 N 1.31827 * 119.99834 * 0.02562 * 22 21 20 27 27 N 1.28352 * 122.27438 * 359.72257 * 26 22 21 28 28 H 0.96996 * 120.00438 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.13032 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.87846 * 179.97438 * 11 10 9 31 31 H 1.08007 * 119.74930 * 180.29875 * 12 11 10 32 32 H 1.07997 * 119.87649 * 179.71977 * 13 12 11 33 33 H 1.08999 * 109.47663 * 25.00625 * 15 14 13 34 34 H 1.09001 * 109.46621 * 145.00082 * 15 14 13 35 35 H 0.96993 * 120.00214 * 355.13104 * 18 16 15 36 36 H 1.08000 * 121.04607 * 359.95278 * 20 19 18 37 37 H 1.08004 * 120.98391 * 179.97438 * 21 20 19 38 38 H 1.08995 * 115.55171 * 129.33345 * 23 22 21 39 39 H 1.08997 * 117.50362 * 0.02562 * 24 23 22 40 40 H 1.08997 * 117.50011 * 145.02580 * 24 23 22 41 41 H 1.09000 * 117.50260 * 252.51482 * 25 24 23 42 42 H 1.08996 * 117.51869 * 107.47675 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4362 2.0772 -1.3987 5 1 1.4673 2.6367 0.7527 6 1 3.5654 1.4254 0.6460 7 6 2.0080 -1.2119 0.0005 8 1 1.4874 -2.1360 0.2045 9 6 3.3965 -1.2267 -0.2661 10 6 3.9624 -0.2716 -1.1310 11 6 5.3147 -0.2958 -1.3837 12 6 6.1200 -1.2529 -0.7854 13 6 5.5726 -2.2019 0.0637 14 6 4.2224 -2.1967 0.3309 15 6 3.6313 -3.2257 1.2597 16 6 3.1011 -4.3838 0.4542 17 8 3.1946 -4.3748 -0.7549 18 7 2.5231 -5.4297 1.0777 19 6 1.9421 -6.4530 0.3295 20 6 1.2494 -7.4804 0.9679 21 6 0.6898 -8.4735 0.1792 22 6 0.8530 -8.3836 -1.1960 23 6 0.2624 -9.4388 -2.0954 24 6 -0.1620 -10.7597 -1.4506 25 6 1.0864 -10.7059 -2.3335 26 7 1.5245 -7.3751 -1.7155 27 7 2.0410 -6.4500 -0.9912 28 1 -0.4850 0.8400 -0.0004 29 1 3.3375 0.4770 -1.5953 30 1 5.7512 0.4359 -2.0474 31 1 7.1814 -1.2614 -0.9856 32 1 6.2086 -2.9455 0.5208 33 1 4.4007 -3.5816 1.9448 34 1 2.8175 -2.7764 1.8290 35 1 2.5113 -5.4705 2.0467 36 1 1.1521 -7.5021 2.0433 37 1 0.1430 -9.2930 0.6218 38 1 -0.3395 -9.0667 -2.9244 39 1 -0.0146 -10.8655 -0.3759 40 1 -1.0435 -11.2570 -1.8553 41 1 1.0262 -11.1675 -3.3191 42 1 2.0557 -10.7760 -1.8399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776933166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:23 Heat of formation + Delta-G solvation = 57.225156 kcal Electronic energy + Delta-G solvation = -25937.363012 eV Core-core repulsion = 22268.925807 eV Total energy + Delta-G solvation = -3668.437205 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.34417 -40.83199 -39.42325 -38.19756 -36.22481 -35.48682 -33.83585 -33.64706 -32.22288 -31.84846 -28.80063 -26.85590 -26.02031 -25.61378 -23.33354 -23.18149 -22.43497 -22.12629 -21.13193 -19.30735 -19.11478 -18.67480 -17.58578 -17.46419 -17.26187 -16.84071 -16.31002 -16.06919 -15.68393 -15.54900 -15.33008 -15.04049 -14.94784 -14.52455 -14.38374 -13.87477 -13.75895 -13.45097 -13.15609 -12.93173 -12.69586 -12.53797 -12.45627 -12.31234 -12.18527 -11.97821 -11.60576 -11.54305 -11.47218 -11.40674 -11.03243 -10.98039 -10.89056 -10.28421 -9.65479 -9.40719 -9.31220 -8.85070 -6.48162 -0.13194 -0.05802 0.76146 0.88637 1.26160 1.37854 1.48037 1.69754 1.84803 2.12724 2.57335 2.64583 2.82807 3.12360 3.39630 3.55923 3.67511 3.77885 3.91201 3.98951 4.09318 4.14133 4.25198 4.27165 4.39753 4.45010 4.56528 4.60832 4.70547 4.78624 4.87843 4.90605 4.96228 5.01215 5.06643 5.14986 5.19519 5.26643 5.36185 5.46123 5.65306 5.84274 5.92840 6.02935 6.26943 6.33856 6.44566 6.77814 6.88921 7.21670 7.89418 8.22973 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017681 B = 0.003085 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.205731 B = 9072.617496 C = 9711.957982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.044 3.956 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.246 1.246 7 C -0.467 4.467 8 H 0.053 0.947 9 C 0.083 3.917 10 C -0.257 4.257 11 C -0.092 4.092 12 C -0.228 4.228 13 C -0.077 4.077 14 C -0.173 4.173 15 C -0.067 4.067 16 C 0.501 3.499 17 O -0.511 6.511 18 N -0.645 5.645 19 C 0.276 3.724 20 C -0.135 4.135 21 C -0.083 4.083 22 C 0.059 3.941 23 C -0.130 4.130 24 C -0.139 4.139 25 C -0.165 4.165 26 N -0.265 5.265 27 N -0.292 5.292 28 H 0.290 0.710 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.104 0.896 35 H 0.439 0.561 36 H 0.202 0.798 37 H 0.201 0.799 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.158 -19.269 8.395 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.169 4.169 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.169 1.169 7 C -0.498 4.498 8 H 0.072 0.928 9 C 0.080 3.920 10 C -0.276 4.276 11 C -0.110 4.110 12 C -0.247 4.247 13 C -0.095 4.095 14 C -0.175 4.175 15 C -0.106 4.106 16 C 0.289 3.711 17 O -0.380 6.380 18 N -0.296 5.296 19 C 0.036 3.964 20 C -0.166 4.166 21 C -0.111 4.111 22 C -0.090 4.090 23 C -0.150 4.150 24 C -0.176 4.176 25 C -0.202 4.202 26 N -0.105 5.105 27 N -0.139 5.139 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.122 0.878 35 H 0.280 0.720 36 H 0.219 0.781 37 H 0.218 0.782 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.601 -18.245 6.211 19.339 hybrid contribution -0.750 0.514 0.968 1.328 sum 0.851 -17.731 7.179 19.148 Atomic orbital electron populations 1.69710 1.09040 1.31035 1.38905 1.26802 0.95373 1.04113 0.90633 0.85467 0.79667 0.76666 0.78899 1.19805 1.20644 1.16899 1.19312 0.92315 0.94360 1.43767 0.92847 1.17754 0.92828 0.91803 0.89607 1.21166 0.96275 1.04608 1.05579 1.20986 0.93068 0.98436 0.98472 1.20909 0.99554 0.99556 1.04632 1.20934 0.94000 0.97462 0.97081 1.19535 0.93460 1.00616 1.03861 1.20367 1.02545 0.90717 0.96998 1.21758 0.77021 0.83343 0.88992 1.90819 1.52786 1.78084 1.16348 1.43567 1.55986 1.18985 1.11076 1.20754 0.93724 0.90367 0.91507 1.22428 0.97130 0.92639 1.04405 1.22597 0.96689 0.99538 0.92274 1.22526 0.96368 0.95519 0.94616 1.20687 1.05401 0.87215 1.01672 1.23268 0.98872 0.95026 1.00482 1.23057 0.96419 0.97896 1.02866 1.72900 1.06626 0.99521 1.31443 1.73573 1.17804 1.18062 1.04422 0.89952 0.89191 0.86062 0.85262 0.85189 0.84846 0.87839 0.71994 0.78054 0.78244 0.86685 0.86342 0.85871 0.86991 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.19 13.93 21.83 0.30 -48.88 16 2 C 0.04 2.43 5.46 85.26 0.47 2.90 16 3 Si 0.97 45.02 24.41 68.60 1.67 46.69 16 4 H -0.27 -12.45 6.66 99.48 0.66 -11.79 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.25 -11.36 6.70 99.48 0.67 -10.69 16 7 C -0.47 -26.93 8.56 23.46 0.20 -26.73 16 8 H 0.05 3.33 7.05 -2.91 -0.02 3.31 16 9 C 0.08 4.38 5.12 -21.29 -0.11 4.27 16 10 C -0.26 -13.14 7.01 22.73 0.16 -12.98 16 11 C -0.09 -4.04 10.02 22.22 0.22 -3.82 16 12 C -0.23 -9.18 10.05 22.46 0.23 -8.96 16 13 C -0.08 -3.11 9.66 22.22 0.21 -2.90 16 14 C -0.17 -7.86 4.43 -19.41 -0.09 -7.95 16 15 C -0.07 -2.42 5.20 29.10 0.15 -2.27 16 16 C 0.50 20.20 7.40 87.66 0.65 20.85 16 17 O -0.51 -26.97 14.33 -3.01 -0.04 -27.01 16 18 N -0.64 -19.22 5.40 -308.09 -1.66 -20.88 16 19 C 0.28 8.94 7.51 132.96 1.00 9.93 16 20 C -0.13 -2.68 10.07 22.64 0.23 -2.45 16 21 C -0.08 -1.51 9.44 22.49 0.21 -1.30 16 22 C 0.06 1.56 6.54 42.69 0.28 1.84 16 23 C -0.13 -2.52 6.23 -11.54 -0.07 -2.59 16 24 C -0.14 -1.39 9.82 30.59 0.30 -1.09 16 25 C -0.16 -2.44 10.23 30.60 0.31 -2.13 16 26 N -0.26 -10.24 11.42 -47.57 -0.54 -10.78 16 27 N -0.29 -12.54 9.08 -54.93 -0.50 -13.03 16 28 H 0.29 15.03 8.30 -92.71 -0.77 14.26 16 29 H 0.09 4.66 4.46 -2.91 -0.01 4.64 16 30 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 31 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 32 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 33 H 0.13 3.37 8.05 -2.39 -0.02 3.36 16 34 H 0.10 3.80 7.15 -2.39 -0.02 3.78 16 35 H 0.44 7.88 8.72 -92.71 -0.81 7.08 16 36 H 0.20 1.76 8.06 -2.91 -0.02 1.73 16 37 H 0.20 1.52 6.36 -2.91 -0.02 1.50 16 38 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.12 0.70 6.44 -2.39 -0.02 0.68 16 40 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -87.63 353.12 3.77 -83.86 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.18 Total: 25.40 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 4.35 Total: -35.36 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -2.40 Total: -93.58 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.04 Total: -27.01 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.67 Total: 46.69 kcal Total: -87.63 3.77 -83.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776933166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.085 kcal (2) G-P(sol) polarization free energy of solvation -87.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds