Wall clock time and date at job start Tue Mar 31 2020 14:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36029 * 120.33641 * 2 1 4 4 C 1.40475 * 119.69473 * 179.90085 * 3 2 1 5 5 C 1.34955 * 120.29561 * 359.56850 * 4 3 2 6 6 N 1.36487 * 120.61319 * 0.02562 * 5 4 3 7 7 C 1.36825 * 132.56772 * 180.02562 * 6 5 4 8 8 C 1.50704 * 126.41253 * 359.97438 * 7 6 5 9 9 N 1.46497 * 109.47232 * 274.71602 * 8 7 6 10 10 C 1.39669 * 119.99919 * 179.97438 * 9 8 7 11 11 C 1.39011 * 120.04098 * 0.02562 * 10 9 8 12 12 C 1.38149 * 120.06218 * 179.97438 * 11 10 9 13 13 C 1.38176 * 120.14087 * 359.72248 * 12 11 10 14 14 C 1.38918 * 120.07843 * 0.55432 * 13 12 11 15 15 O 1.35753 * 120.02696 * 179.71957 * 14 13 12 16 16 C 1.34835 * 116.99726 * 174.18640 * 15 14 13 17 17 H 1.08000 * 119.99927 * 5.06436 * 16 15 14 18 18 C 1.38651 * 119.99920 * 185.05751 * 16 15 14 19 19 N 1.31560 * 119.99556 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00143 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46948 * 89.99924 * 20 18 16 22 22 H 1.48501 * 109.47154 * 210.00012 * 20 18 16 23 23 H 1.48499 * 109.47084 * 330.00172 * 20 18 16 24 24 C 1.38749 * 120.03904 * 179.97438 * 10 9 8 25 25 C 1.35107 * 107.18003 * 179.71737 * 7 6 5 26 26 N 1.33509 * 108.62511 * 0.26557 * 25 7 6 27 27 C 1.32557 * 109.16024 * 359.97438 * 26 25 7 28 28 H 1.08997 * 109.47477 * 270.76389 * 1 2 3 29 29 H 1.09003 * 109.46950 * 30.75862 * 1 2 3 30 30 H 1.08998 * 109.47483 * 150.76523 * 1 2 3 31 31 H 1.08002 * 120.14935 * 359.47236 * 3 2 1 32 32 H 1.07997 * 119.84928 * 179.58814 * 4 3 2 33 33 H 1.08002 * 119.69104 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.47297 * 154.71328 * 8 7 6 35 35 H 1.09006 * 109.47085 * 34.71297 * 8 7 6 36 36 H 0.96998 * 120.00224 * 359.97438 * 9 8 7 37 37 H 1.07992 * 119.96556 * 359.95867 * 11 10 9 38 38 H 1.07993 * 119.92970 * 180.02562 * 12 11 10 39 39 H 1.07999 * 119.95764 * 180.29755 * 13 12 11 40 40 H 0.97003 * 119.99934 * 180.02562 * 19 18 16 41 41 H 1.08006 * 120.07271 * 359.97438 * 24 10 9 42 42 H 1.08000 * 125.68529 * 180.26242 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1940 1.1740 0.0000 4 6 3.5987 1.1583 0.0021 5 6 4.2664 -0.0145 0.0129 6 7 3.5895 -1.1996 0.0214 7 6 4.0054 -2.5030 0.0333 8 6 5.4328 -2.9865 0.0399 9 7 5.9342 -3.0474 -1.3353 10 6 7.2421 -3.4697 -1.5836 11 6 8.0687 -3.8330 -0.5266 12 6 9.3623 -4.2513 -0.7718 13 6 9.8368 -4.3155 -2.0680 14 6 9.0177 -3.9483 -3.1282 15 8 9.4869 -4.0064 -4.4008 16 6 8.6063 -3.7529 -5.3899 17 1 7.6016 -3.4373 -5.1507 18 6 8.9908 -3.8974 -6.7142 19 7 8.1317 -3.6496 -7.6793 20 14 10.7285 -4.4438 -7.1280 21 1 10.7745 -5.9257 -7.2121 22 1 11.1332 -3.8611 -8.4326 23 1 11.6591 -3.9790 -6.0683 24 6 7.7177 -3.5282 -2.8858 25 6 2.8971 -3.2756 0.0437 26 7 1.8238 -2.4816 0.0327 27 6 2.2188 -1.2163 0.0159 28 1 -0.3634 0.0137 1.0275 29 1 -0.3633 0.8831 -0.5256 30 1 -0.3634 -0.8967 -0.5019 31 1 1.6620 2.1139 -0.0086 32 1 4.1467 2.0889 -0.0046 33 1 5.3464 -0.0152 0.0149 34 1 5.4780 -3.9794 0.4874 35 1 6.0469 -2.2980 0.6204 36 1 5.3578 -2.7944 -2.0733 37 1 7.6992 -3.7879 0.4871 38 1 10.0024 -4.5334 0.0509 39 1 10.8470 -4.6475 -2.2566 40 1 8.4005 -3.7510 -8.6058 41 1 7.0772 -3.2477 -3.7089 42 1 2.8819 -4.3554 0.0584 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779588788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:06 Heat of formation + Delta-G solvation = 92.304386 kcal Electronic energy + Delta-G solvation = -25473.754767 eV Core-core repulsion = 21806.838711 eV Total energy + Delta-G solvation = -3666.916055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.08072 -39.22330 -37.89569 -37.19767 -35.20191 -34.41435 -32.32699 -31.17860 -30.88210 -29.14968 -28.07553 -27.33977 -25.46086 -25.17795 -23.17735 -22.69793 -21.81656 -21.03745 -20.30320 -18.04234 -17.67809 -17.40233 -17.09380 -16.21436 -16.08621 -15.65784 -15.20095 -14.70523 -14.67077 -14.26132 -14.00490 -13.79126 -13.60837 -13.52090 -13.49153 -13.28999 -12.99293 -12.81780 -12.22958 -12.14038 -12.09917 -12.03806 -11.88458 -11.55319 -10.99201 -10.86027 -10.80414 -10.64828 -10.28698 -10.20919 -9.53870 -9.42842 -9.01467 -8.82046 -7.99596 -7.49855 -6.91936 -6.39164 -4.06250 0.48477 0.96484 2.25555 2.31472 2.42264 2.56131 3.23647 3.25670 3.27499 3.42246 3.84188 3.96786 4.17968 4.26012 4.35838 4.55222 4.58739 4.69034 4.73111 4.92197 5.02793 5.14732 5.20241 5.24046 5.33460 5.37055 5.40453 5.57144 5.69008 5.72589 5.81351 5.86288 6.01914 6.10984 6.25538 6.26968 6.40923 6.46601 6.52083 6.81233 6.90556 7.18974 7.24411 7.48743 7.63442 7.79570 7.86141 8.01408 8.13558 8.96684 9.60531 10.68684 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.002696 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.031907 B =10382.419570 C =11264.403696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.048 4.048 3 C -0.108 4.108 4 C -0.139 4.139 5 C 0.056 3.944 6 N -0.351 5.351 7 C -0.084 4.084 8 C 0.215 3.785 9 N -0.752 5.752 10 C 0.248 3.752 11 C -0.273 4.273 12 C -0.040 4.040 13 C -0.236 4.236 14 C 0.196 3.804 15 O -0.217 6.217 16 C -0.387 4.387 17 H 0.105 0.895 18 C 0.062 3.938 19 N -0.882 5.882 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.289 4.289 25 C 0.056 3.944 26 N -0.491 5.491 27 C 0.228 3.772 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.142 0.858 32 H 0.151 0.849 33 H 0.163 0.837 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.397 0.603 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.279 0.721 41 H 0.130 0.870 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.496 8.388 18.250 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.051 4.051 3 C -0.132 4.132 4 C -0.160 4.160 5 C -0.067 4.067 6 N -0.022 5.022 7 C -0.196 4.196 8 C 0.090 3.910 9 N -0.385 5.385 10 C 0.147 3.853 11 C -0.296 4.296 12 C -0.059 4.059 13 C -0.257 4.257 14 C 0.143 3.857 15 O -0.122 6.122 16 C -0.463 4.463 17 H 0.122 0.878 18 C -0.141 4.141 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.312 4.312 25 C -0.097 4.097 26 N -0.211 5.211 27 C -0.015 4.015 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.159 0.841 32 H 0.169 0.831 33 H 0.181 0.819 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.232 0.768 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.147 0.853 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.073 8.023 18.116 22.697 hybrid contribution 1.250 0.206 -0.701 1.448 sum -9.823 8.228 17.416 21.622 Atomic orbital electron populations 1.20651 0.88893 1.03628 1.02874 1.19037 0.96977 0.88368 1.00680 1.20961 0.93732 0.97888 1.00572 1.20808 0.94743 0.97221 1.03189 1.21675 0.99014 0.83226 1.02752 1.42682 1.08666 1.05748 1.45096 1.21228 0.98070 0.81334 1.19002 1.19362 0.85643 1.00567 0.85467 1.44672 1.11943 1.75712 1.06178 1.17458 0.83378 0.91377 0.93101 1.20118 0.95825 1.17145 0.96542 1.20372 0.94418 0.95972 0.95149 1.20046 1.00698 1.13890 0.91032 1.18800 0.91033 0.90980 0.84918 1.83584 1.38415 1.78622 1.11551 1.20749 0.95049 1.46440 0.84032 0.87770 1.24468 0.99457 0.96124 0.94002 1.69652 1.35041 1.47263 1.00042 0.86184 0.83535 0.79247 0.77958 1.19889 1.20866 1.18327 1.20610 0.98198 1.17211 0.95199 1.22403 0.86547 1.00016 1.00746 1.70757 1.29692 0.97945 1.22671 1.20772 0.79997 0.94587 1.06184 0.90632 0.90921 0.90323 0.84054 0.83092 0.81942 0.89867 0.92102 0.76844 0.87673 0.86971 0.86885 0.91129 0.85254 0.79997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.02 36.00 0.36 -0.44 16 2 C -0.05 -0.48 5.90 -104.40 -0.62 -1.10 16 3 C -0.11 -0.85 9.72 -39.53 -0.38 -1.23 16 4 C -0.14 -1.08 9.99 -39.91 -0.40 -1.48 16 5 C 0.06 0.54 10.85 -16.65 -0.18 0.36 16 6 N -0.35 -4.21 2.94 -58.46 -0.17 -4.38 16 7 C -0.08 -1.01 6.40 -81.48 -0.52 -1.53 16 8 C 0.22 2.51 5.34 -5.19 -0.03 2.48 16 9 N -0.75 -11.09 5.72 -59.82 -0.34 -11.44 16 10 C 0.25 4.44 6.65 -83.81 -0.56 3.88 16 11 C -0.27 -4.50 9.31 -39.33 -0.37 -4.86 16 12 C -0.04 -0.68 10.03 -39.64 -0.40 -1.08 16 13 C -0.24 -4.73 9.99 -39.35 -0.39 -5.12 16 14 C 0.20 4.57 6.64 -39.14 -0.26 4.31 16 15 O -0.22 -5.80 8.58 0.03 0.00 -5.80 16 16 C -0.39 -11.02 9.95 30.89 0.31 -10.72 16 17 H 0.10 3.05 5.43 -52.49 -0.29 2.76 16 18 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -25.73 13.96 55.48 0.77 -24.96 16 20 Si 0.91 21.88 28.62 -169.99 -4.86 17.01 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.26 -6.28 7.11 56.52 0.40 -5.87 16 24 C -0.29 -6.27 9.01 -39.20 -0.35 -6.62 16 25 C 0.06 0.70 11.75 -17.94 -0.21 0.49 16 26 N -0.49 -6.85 11.31 -12.78 -0.14 -7.00 16 27 C 0.23 2.92 7.52 -156.04 -1.17 1.74 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 32 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 35 H 0.06 0.67 7.95 -51.93 -0.41 0.25 16 36 H 0.40 6.08 8.47 -40.82 -0.35 5.73 16 37 H 0.11 1.44 6.72 -52.49 -0.35 1.09 16 38 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 39 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.28 7.51 8.31 -40.82 -0.34 7.18 16 41 H 0.13 3.01 5.64 -52.48 -0.30 2.71 16 42 H 0.18 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -32.56 360.18 -9.63 -42.19 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.04 Total: 8.17 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -5.27 Total: -19.24 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.12 Total: -47.77 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: 0.00 Total: -5.80 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.86 Total: 17.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.56 -9.63 -42.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779588788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.496 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds