Wall clock time and date at job start Tue Mar 31 2020 14:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36029 * 120.33641 * 2 1 4 4 C 1.40475 * 119.69473 * 179.90085 * 3 2 1 5 5 C 1.34955 * 120.29561 * 359.56850 * 4 3 2 6 6 N 1.36487 * 120.61319 * 0.02562 * 5 4 3 7 7 C 1.36825 * 132.56772 * 180.02562 * 6 5 4 8 8 C 1.50704 * 126.41253 * 359.97438 * 7 6 5 9 9 N 1.46497 * 109.47232 * 274.71602 * 8 7 6 10 10 C 1.39669 * 119.99919 * 179.97438 * 9 8 7 11 11 C 1.39011 * 120.04098 * 0.02562 * 10 9 8 12 12 C 1.38149 * 120.06218 * 179.97438 * 11 10 9 13 13 C 1.38176 * 120.14087 * 359.72248 * 12 11 10 14 14 C 1.38918 * 120.07843 * 0.55432 * 13 12 11 15 15 O 1.35753 * 120.02696 * 179.71957 * 14 13 12 16 16 C 1.34835 * 116.99726 * 174.18640 * 15 14 13 17 17 H 1.08000 * 119.99927 * 5.06436 * 16 15 14 18 18 C 1.38651 * 119.99920 * 185.05751 * 16 15 14 19 19 N 1.31560 * 119.99556 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00143 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46948 * 89.99924 * 20 18 16 22 22 H 1.48501 * 109.47154 * 210.00012 * 20 18 16 23 23 H 1.48499 * 109.47084 * 330.00172 * 20 18 16 24 24 C 1.38749 * 120.03904 * 179.97438 * 10 9 8 25 25 C 1.35107 * 107.18003 * 179.71737 * 7 6 5 26 26 N 1.33509 * 108.62511 * 0.26557 * 25 7 6 27 27 C 1.32557 * 109.16024 * 359.97438 * 26 25 7 28 28 H 1.08997 * 109.47477 * 270.76389 * 1 2 3 29 29 H 1.09003 * 109.46950 * 30.75862 * 1 2 3 30 30 H 1.08998 * 109.47483 * 150.76523 * 1 2 3 31 31 H 1.08002 * 120.14935 * 359.47236 * 3 2 1 32 32 H 1.07997 * 119.84928 * 179.58814 * 4 3 2 33 33 H 1.08002 * 119.69104 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.47297 * 154.71328 * 8 7 6 35 35 H 1.09006 * 109.47085 * 34.71297 * 8 7 6 36 36 H 0.96998 * 120.00224 * 359.97438 * 9 8 7 37 37 H 1.07992 * 119.96556 * 359.95867 * 11 10 9 38 38 H 1.07993 * 119.92970 * 180.02562 * 12 11 10 39 39 H 1.07999 * 119.95764 * 180.29755 * 13 12 11 40 40 H 0.97003 * 119.99934 * 180.02562 * 19 18 16 41 41 H 1.08006 * 120.07271 * 359.97438 * 24 10 9 42 42 H 1.08000 * 125.68529 * 180.26242 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1940 1.1740 0.0000 4 6 3.5987 1.1583 0.0021 5 6 4.2664 -0.0145 0.0129 6 7 3.5895 -1.1996 0.0214 7 6 4.0054 -2.5030 0.0333 8 6 5.4328 -2.9865 0.0399 9 7 5.9342 -3.0474 -1.3353 10 6 7.2421 -3.4697 -1.5836 11 6 8.0687 -3.8330 -0.5266 12 6 9.3623 -4.2513 -0.7718 13 6 9.8368 -4.3155 -2.0680 14 6 9.0177 -3.9483 -3.1282 15 8 9.4869 -4.0064 -4.4008 16 6 8.6063 -3.7529 -5.3899 17 1 7.6016 -3.4373 -5.1507 18 6 8.9908 -3.8974 -6.7142 19 7 8.1317 -3.6496 -7.6793 20 14 10.7285 -4.4438 -7.1280 21 1 10.7745 -5.9257 -7.2121 22 1 11.1332 -3.8611 -8.4326 23 1 11.6591 -3.9790 -6.0683 24 6 7.7177 -3.5282 -2.8858 25 6 2.8971 -3.2756 0.0437 26 7 1.8238 -2.4816 0.0327 27 6 2.2188 -1.2163 0.0159 28 1 -0.3634 0.0137 1.0275 29 1 -0.3633 0.8831 -0.5256 30 1 -0.3634 -0.8967 -0.5019 31 1 1.6620 2.1139 -0.0086 32 1 4.1467 2.0889 -0.0046 33 1 5.3464 -0.0152 0.0149 34 1 5.4780 -3.9794 0.4874 35 1 6.0469 -2.2980 0.6204 36 1 5.3578 -2.7944 -2.0733 37 1 7.6992 -3.7879 0.4871 38 1 10.0024 -4.5334 0.0509 39 1 10.8470 -4.6475 -2.2566 40 1 8.4005 -3.7510 -8.6058 41 1 7.0772 -3.2477 -3.7089 42 1 2.8819 -4.3554 0.0584 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779588788.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:05 Heat of formation + Delta-G solvation = 73.344043 kcal Electronic energy + Delta-G solvation = -25474.576949 eV Core-core repulsion = 21806.838711 eV Total energy + Delta-G solvation = -3667.738238 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.91644 -40.87129 -38.96617 -38.47955 -36.38265 -35.36483 -34.39543 -32.07733 -31.88523 -30.67884 -29.39009 -28.00950 -27.15380 -26.50676 -23.95921 -23.55829 -23.34142 -22.34615 -21.42105 -19.85400 -19.21354 -18.44963 -17.88735 -17.30648 -17.14547 -16.81058 -16.55707 -16.06678 -15.88039 -15.73836 -15.37844 -15.26897 -14.81152 -14.68235 -14.52307 -14.19588 -14.10107 -14.03764 -13.84414 -13.55168 -13.11895 -12.86220 -12.75839 -12.63238 -12.58614 -12.55308 -12.19157 -12.01231 -11.55365 -11.40832 -11.23761 -11.01654 -10.70946 -9.84694 -9.19043 -8.80414 -8.49781 -8.31326 -6.22537 -0.23427 0.16290 0.72836 0.86702 1.30932 1.36060 1.51399 1.52408 1.68378 2.28465 2.47126 2.64828 2.81655 3.13971 3.18918 3.25502 3.42101 3.58924 3.87687 3.96467 4.00628 4.17751 4.19441 4.37299 4.48276 4.50336 4.57909 4.62452 4.72035 4.73040 4.77770 4.96528 4.98879 5.02827 5.04261 5.16800 5.31295 5.40310 5.44425 5.52785 5.59978 5.74720 5.82775 5.89545 6.01924 6.14780 6.52571 6.66374 6.76016 6.85244 7.62200 8.62182 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.002696 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.031907 B =10382.419570 C =11264.403696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.075 4.075 3 C -0.094 4.094 4 C -0.127 4.127 5 C 0.029 3.971 6 N -0.355 5.355 7 C -0.096 4.096 8 C 0.219 3.781 9 N -0.746 5.746 10 C 0.254 3.746 11 C -0.253 4.253 12 C -0.025 4.025 13 C -0.248 4.248 14 C 0.158 3.842 15 O -0.245 6.245 16 C -0.395 4.395 17 H 0.076 0.924 18 C 0.008 3.992 19 N -0.927 5.927 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.267 1.267 23 H -0.262 1.262 24 C -0.311 4.311 25 C 0.042 3.958 26 N -0.528 5.528 27 C 0.209 3.791 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.178 0.822 32 H 0.186 0.814 33 H 0.174 0.826 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.391 0.609 37 H 0.148 0.852 38 H 0.160 0.840 39 H 0.122 0.878 40 H 0.284 0.716 41 H 0.097 0.903 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.597 9.572 21.429 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.077 4.077 3 C -0.117 4.117 4 C -0.147 4.147 5 C -0.093 4.093 6 N -0.026 5.026 7 C -0.209 4.209 8 C 0.095 3.905 9 N -0.376 5.376 10 C 0.150 3.850 11 C -0.276 4.276 12 C -0.043 4.043 13 C -0.269 4.269 14 C 0.108 3.892 15 O -0.152 6.152 16 C -0.472 4.472 17 H 0.093 0.907 18 C -0.190 4.190 19 N -0.568 5.568 20 Si 0.794 3.206 21 H -0.191 1.191 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.335 4.335 25 C -0.111 4.111 26 N -0.248 5.248 27 C -0.034 4.034 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.195 0.805 32 H 0.203 0.797 33 H 0.191 0.809 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.225 0.775 37 H 0.165 0.835 38 H 0.178 0.822 39 H 0.140 0.860 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -10.205 9.220 21.359 25.405 hybrid contribution 0.771 -0.015 -1.340 1.546 sum -9.434 9.206 20.020 23.970 Atomic orbital electron populations 1.20658 0.87703 1.03743 1.03476 1.19462 0.98134 0.88210 1.01940 1.21451 0.93971 0.98500 0.97791 1.21337 0.95032 0.97850 1.00517 1.22143 0.99864 0.83204 1.04116 1.42821 1.08615 1.06288 1.44836 1.21219 0.98001 0.81645 1.19996 1.19533 0.85553 1.01931 0.83448 1.44844 1.10690 1.74423 1.07685 1.17534 0.84791 0.90649 0.92011 1.20632 0.95193 1.14006 0.97761 1.20910 0.94968 0.93545 0.94888 1.20350 1.00910 1.14192 0.91459 1.19410 0.92520 0.92694 0.84569 1.83524 1.38169 1.81080 1.12460 1.20659 0.94553 1.46712 0.85262 0.90678 1.25308 1.03656 0.96381 0.93672 1.69742 1.37075 1.49405 1.00551 0.85192 0.78293 0.79079 0.77988 1.19080 1.19193 1.18579 1.20549 0.97811 1.18856 0.96309 1.22747 0.86670 1.00851 1.00801 1.70712 1.30664 0.98963 1.24455 1.21297 0.80761 0.95140 1.06227 0.89828 0.88480 0.92408 0.80473 0.79659 0.80854 0.88116 0.90396 0.77540 0.83472 0.82231 0.86016 0.90656 0.88459 0.78681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.02 71.24 0.71 -0.71 16 2 C -0.08 -1.41 5.90 -19.72 -0.12 -1.53 16 3 C -0.09 -1.19 9.72 22.30 0.22 -0.97 16 4 C -0.13 -1.59 9.99 22.06 0.22 -1.37 16 5 C 0.03 0.50 10.85 83.21 0.90 1.41 16 6 N -0.35 -8.23 2.94 -338.87 -1.00 -9.22 16 7 C -0.10 -2.25 6.40 41.06 0.26 -1.98 16 8 C 0.22 4.59 5.34 85.64 0.46 5.05 16 9 N -0.75 -21.31 5.72 -343.18 -1.96 -23.27 16 10 C 0.25 8.79 6.65 38.20 0.25 9.04 16 11 C -0.25 -7.29 9.31 22.43 0.21 -7.08 16 12 C -0.02 -0.73 10.03 22.23 0.22 -0.51 16 13 C -0.25 -9.61 9.99 22.42 0.22 -9.39 16 14 C 0.16 7.59 6.64 22.56 0.15 7.74 16 15 O -0.25 -13.69 8.58 -22.82 -0.20 -13.89 16 16 C -0.40 -23.99 9.95 67.92 0.68 -23.31 16 17 H 0.08 4.83 5.43 -2.91 -0.02 4.81 16 18 C 0.01 0.45 5.49 84.83 0.47 0.92 16 19 N -0.93 -56.66 13.96 21.61 0.30 -56.35 16 20 Si 0.97 46.41 28.62 68.60 1.96 48.37 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 24 C -0.31 -14.08 9.01 22.52 0.20 -13.88 16 25 C 0.04 1.07 11.75 83.72 0.98 2.05 16 26 N -0.53 -15.09 11.31 -194.35 -2.20 -17.29 16 27 C 0.21 5.32 7.52 134.11 1.01 6.33 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.10 0.87 8.09 -2.39 -0.02 0.85 16 30 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 31 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 32 H 0.19 0.98 8.06 -2.91 -0.02 0.96 16 33 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 34 H 0.10 1.81 7.95 -2.39 -0.02 1.79 16 35 H 0.08 1.41 7.95 -2.38 -0.02 1.39 16 36 H 0.39 12.26 8.47 -92.71 -0.79 11.48 16 37 H 0.15 3.09 6.72 -2.91 -0.02 3.07 16 38 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 40 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 41 H 0.10 4.97 5.64 -2.91 -0.02 4.95 16 42 H 0.20 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -76.96 360.18 4.24 -72.72 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.28 Total: 27.14 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 7.05 Total: -28.20 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -4.86 Total: -106.14 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.20 Total: -13.89 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.96 Total: 48.37 kcal Total: -76.96 4.24 -72.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779588788.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.065 kcal (2) G-P(sol) polarization free energy of solvation -76.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds