Wall clock time and date at job start Tue Mar 31 2020 14:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34950 * 119.69609 * 2 1 4 4 C 1.40470 * 120.30045 * 180.02562 * 3 2 1 5 5 C 1.36021 * 119.69860 * 359.97438 * 4 3 2 6 6 C 1.40938 * 119.32474 * 0.02562 * 5 4 3 7 7 N 1.32553 * 132.33254 * 179.97438 * 6 5 4 8 8 C 1.33513 * 109.16498 * 180.02562 * 7 6 5 9 9 C 1.35103 * 108.62058 * 0.02562 * 8 7 6 10 10 C 1.50706 * 126.40404 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.46776 * 264.88814 * 10 9 8 12 12 C 1.39675 * 120.00021 * 179.97438 * 11 10 9 13 13 C 1.39011 * 120.04039 * 359.73396 * 12 11 10 14 14 C 1.38149 * 120.06389 * 179.69461 * 13 12 11 15 15 C 1.38175 * 120.13815 * 0.60054 * 14 13 12 16 16 C 1.38913 * 120.08337 * 359.67353 * 15 14 13 17 17 O 1.35743 * 120.03440 * 180.02562 * 16 15 14 18 18 C 1.34829 * 117.00243 * 185.82928 * 17 16 15 19 19 H 1.08002 * 120.00250 * 5.44629 * 18 17 16 20 20 C 1.38654 * 120.00054 * 185.44380 * 18 17 16 21 21 N 1.31557 * 120.00216 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99951 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47062 * 59.99816 * 22 20 18 24 24 H 1.48500 * 109.46928 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46682 * 299.99899 * 22 20 18 26 26 C 1.38745 * 120.04358 * 180.02562 * 12 11 10 27 27 N 1.36489 * 119.69511 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47405 * 264.44674 * 1 2 3 29 29 H 1.09001 * 109.47330 * 24.45445 * 1 2 3 30 30 H 1.09006 * 109.46928 * 144.45154 * 1 2 3 31 31 H 1.08001 * 119.84773 * 359.97438 * 3 2 1 32 32 H 1.08008 * 120.15324 * 180.02562 * 4 3 2 33 33 H 1.07992 * 120.34024 * 180.29563 * 5 4 3 34 34 H 1.07999 * 125.69061 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.47556 * 24.89136 * 10 9 8 36 36 H 1.08999 * 109.47167 * 144.89729 * 10 9 8 37 37 H 0.96999 * 120.00397 * 0.02562 * 11 10 9 38 38 H 1.08005 * 119.96404 * 359.97215 * 13 12 11 39 39 H 1.07993 * 119.92865 * 180.27518 * 14 13 12 40 40 H 1.08002 * 119.95859 * 179.70152 * 15 14 13 41 41 H 0.96993 * 120.00319 * 180.02562 * 21 20 18 42 42 H 1.08009 * 120.07067 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1755 1.1723 0.0000 4 6 3.5801 1.1871 -0.0005 5 6 4.2665 0.0127 -0.0005 6 6 3.5539 -1.2032 -0.0005 7 7 3.9479 -2.4688 -0.0010 8 6 2.8741 -3.2623 -0.0013 9 6 1.7663 -2.4889 -0.0017 10 6 0.3386 -2.9715 -0.0016 11 7 -0.1632 -3.0118 -1.3773 12 6 -1.4712 -3.4306 -1.6316 13 6 -2.2957 -3.8146 -0.5803 14 6 -3.5916 -4.2229 -0.8307 15 6 -4.0682 -4.2627 -2.1270 16 6 -3.2476 -3.8857 -3.1825 17 8 -3.7171 -3.9247 -4.4556 18 6 -2.8354 -3.6629 -5.4414 19 1 -1.7903 -3.5221 -5.2080 20 6 -3.2703 -3.5743 -6.7550 21 7 -4.5432 -3.7463 -7.0395 22 14 -2.0486 -3.2123 -8.1210 23 1 -1.0153 -4.2781 -8.1563 24 1 -2.7608 -3.1692 -9.4234 25 1 -1.3988 -1.9010 -7.8691 26 6 -1.9473 -3.4695 -2.9342 27 7 2.1831 -1.1856 -0.0005 28 1 -0.3634 -0.0994 1.0228 29 1 -0.3634 0.9355 -0.4254 30 1 -0.3633 -0.8362 -0.5975 31 1 1.6281 2.1033 -0.0004 32 1 4.1128 2.1267 -0.0001 33 1 5.3464 0.0120 0.0039 34 1 2.8886 -4.3421 -0.0013 35 1 0.2929 -3.9708 0.4313 36 1 -0.2748 -2.2912 0.5891 37 1 0.4130 -2.7483 -2.1117 38 1 -1.9243 -3.7895 0.4335 39 1 -4.2316 -4.5166 -0.0119 40 1 -5.0802 -4.5870 -2.3198 41 1 -4.8474 -3.6848 -7.9585 42 1 -1.3074 -3.1758 -3.7533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779589268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:24 Heat of formation + Delta-G solvation = 75.854496 kcal Electronic energy + Delta-G solvation = -25976.016739 eV Core-core repulsion = 22308.387363 eV Total energy + Delta-G solvation = -3667.629376 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.96218 -40.75892 -38.84617 -38.58114 -36.52672 -34.91393 -34.19391 -32.26477 -31.84982 -30.50365 -29.59138 -28.41342 -27.22565 -25.99784 -24.12946 -23.62402 -23.35015 -22.28006 -21.44692 -19.78947 -19.11066 -18.38402 -17.70216 -17.23431 -17.20030 -16.73703 -16.55931 -16.15157 -15.81637 -15.60591 -15.43855 -15.18079 -14.96728 -14.64128 -14.48131 -14.35295 -14.20008 -13.96261 -13.49790 -13.37527 -13.21380 -12.87874 -12.62319 -12.49800 -12.42149 -12.38685 -12.23178 -12.08209 -11.90885 -11.34497 -11.23760 -10.94724 -10.62660 -9.83737 -9.10203 -8.79818 -8.46251 -8.27568 -6.14241 -0.22627 0.17635 0.77395 0.92222 1.32346 1.43385 1.48205 1.48766 1.67649 2.17006 2.51037 2.64983 2.88746 3.20447 3.27767 3.39917 3.49016 3.59626 3.84742 3.92887 4.12481 4.21508 4.26193 4.40133 4.43269 4.49902 4.53867 4.60935 4.62426 4.66719 4.75309 4.94486 5.00712 5.05600 5.13557 5.14581 5.14891 5.22069 5.44011 5.55066 5.58602 5.75971 5.81845 6.00861 6.04543 6.11263 6.54895 6.70820 6.77235 6.99210 7.83138 8.77137 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012729 B = 0.003200 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.196879 B = 8747.691129 C = 9819.580462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.075 3.925 3 C -0.145 4.145 4 C -0.074 4.074 5 C -0.115 4.115 6 C 0.212 3.788 7 N -0.534 5.534 8 C 0.045 3.955 9 C -0.096 4.096 10 C 0.213 3.787 11 N -0.742 5.742 12 C 0.259 3.741 13 C -0.259 4.259 14 C -0.024 4.024 15 C -0.259 4.259 16 C 0.152 3.848 17 O -0.232 6.232 18 C -0.410 4.410 19 H 0.096 0.904 20 C -0.021 4.021 21 N -0.920 5.920 22 Si 1.014 2.986 23 H -0.260 1.260 24 H -0.269 1.269 25 H -0.259 1.259 26 C -0.314 4.314 27 N -0.355 5.355 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.182 0.818 32 H 0.181 0.819 33 H 0.164 0.836 34 H 0.196 0.804 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.393 0.607 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.106 0.894 41 H 0.272 0.728 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.973 10.941 18.346 26.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.029 4.029 3 C -0.165 4.165 4 C -0.098 4.098 5 C -0.135 4.135 6 C -0.031 4.031 7 N -0.255 5.255 8 C -0.108 4.108 9 C -0.209 4.209 10 C 0.089 3.911 11 N -0.372 5.372 12 C 0.156 3.844 13 C -0.281 4.281 14 C -0.042 4.042 15 C -0.280 4.280 16 C 0.101 3.899 17 O -0.138 6.138 18 C -0.486 4.486 19 H 0.113 0.887 20 C -0.219 4.219 21 N -0.559 5.559 22 Si 0.833 3.167 23 H -0.185 1.185 24 H -0.193 1.193 25 H -0.184 1.184 26 C -0.338 4.338 27 N -0.027 5.027 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.200 0.800 32 H 0.198 0.802 33 H 0.181 0.819 34 H 0.213 0.787 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.227 0.773 38 H 0.164 0.836 39 H 0.171 0.829 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.397 10.564 18.307 26.150 hybrid contribution -0.277 0.109 -1.401 1.432 sum 15.120 10.673 16.907 25.067 Atomic orbital electron populations 1.21255 0.87001 1.05876 1.04566 1.20866 0.96214 0.83814 1.01989 1.21193 0.95243 0.97148 1.02907 1.21541 0.93695 0.99099 0.95458 1.20609 1.01594 0.87478 1.03835 1.21534 0.80614 0.95460 1.05504 1.70756 1.30686 0.99076 1.24941 1.22723 0.86627 1.00823 1.00640 1.21181 0.97944 0.81673 1.20060 1.19659 0.85730 1.01891 0.83790 1.44804 1.10546 1.74227 1.07658 1.17454 0.84639 0.90389 0.91916 1.20553 0.95023 1.14604 0.97967 1.20837 0.95177 0.93756 0.94473 1.20286 1.00483 1.15120 0.92132 1.19648 0.92789 0.92025 0.85415 1.83952 1.38657 1.79328 1.11874 1.21681 0.90614 1.50652 0.85643 0.88702 1.26507 0.99106 0.96334 0.99913 1.70169 1.16357 1.48506 1.20856 0.84719 0.76726 0.79511 0.75695 1.18487 1.19343 1.18366 1.20481 0.97524 1.19355 0.96442 1.42839 1.08624 1.05847 1.45364 0.88605 0.87624 0.90859 0.80043 0.80168 0.81853 0.78685 0.88516 0.90110 0.77326 0.83629 0.82864 0.87593 0.91854 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.59 71.24 0.61 -1.38 16 2 C 0.08 1.33 6.78 41.08 0.28 1.60 16 3 C -0.14 -1.78 9.58 22.06 0.21 -1.57 16 4 C -0.07 -0.84 10.07 22.30 0.22 -0.62 16 5 C -0.12 -1.98 10.11 22.42 0.23 -1.75 16 6 C 0.21 5.18 7.81 134.11 1.05 6.23 16 7 N -0.53 -14.90 11.32 -194.35 -2.20 -17.10 16 8 C 0.04 1.09 11.75 83.72 0.98 2.07 16 9 C -0.10 -2.18 6.36 41.06 0.26 -1.92 16 10 C 0.21 4.35 4.21 85.64 0.36 4.71 16 11 N -0.74 -19.85 4.67 -343.19 -1.60 -21.46 16 12 C 0.26 8.77 6.65 38.20 0.25 9.03 16 13 C -0.26 -7.67 9.31 22.43 0.21 -7.46 16 14 C -0.02 -0.77 10.03 22.23 0.22 -0.55 16 15 C -0.26 -11.14 9.99 22.42 0.22 -10.92 16 16 C 0.15 7.72 6.64 22.56 0.15 7.87 16 17 O -0.23 -14.24 9.76 -22.65 -0.22 -14.46 16 18 C -0.41 -24.40 9.44 67.92 0.64 -23.76 16 19 H 0.10 5.26 5.30 -2.91 -0.02 5.25 16 20 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 21 N -0.92 -57.29 13.67 21.61 0.30 -56.99 16 22 Si 1.01 43.84 29.55 68.60 2.03 45.86 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 C -0.31 -13.87 8.98 22.52 0.20 -13.67 16 27 N -0.35 -7.97 2.95 -325.67 -0.96 -8.93 16 28 H 0.10 1.19 8.04 -2.39 -0.02 1.17 16 29 H 0.11 1.25 8.00 -2.39 -0.02 1.23 16 30 H 0.07 1.49 5.05 -2.38 -0.01 1.48 16 31 H 0.18 1.01 8.02 -2.91 -0.02 0.99 16 32 H 0.18 0.64 8.06 -2.91 -0.02 0.61 16 33 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.20 3.81 8.06 -2.91 -0.02 3.78 16 35 H 0.10 1.73 7.93 -2.39 -0.02 1.71 16 36 H 0.08 1.47 5.93 -2.39 -0.01 1.45 16 37 H 0.39 11.20 8.47 -92.71 -0.79 10.42 16 38 H 0.15 3.18 6.73 -2.91 -0.02 3.16 16 39 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 41 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 42 H 0.11 4.97 5.71 -2.91 -0.02 4.95 16 Total: -1.00 -79.02 352.79 4.20 -74.82 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.29 Total: 31.12 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 6.57 Total: -32.86 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -4.47 Total: -104.48 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.22 Total: -14.46 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -79.02 4.20 -74.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779589268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.671 kcal (2) G-P(sol) polarization free energy of solvation -79.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds