Wall clock time and date at job start Tue Mar 31 2020 14:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00175 * 2 1 4 4 H 1.48503 * 109.47093 * 269.99971 * 3 2 1 5 5 H 1.48499 * 109.47099 * 30.00193 * 3 2 1 6 6 H 1.48502 * 109.47082 * 149.99958 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00095 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00181 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47231 * 179.97438 * 9 7 2 11 11 C 1.34772 * 119.99864 * 179.97438 * 10 9 7 12 12 O 1.21593 * 120.00321 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99684 * 180.02562 * 11 10 9 14 14 C 1.40192 * 119.99862 * 185.32049 * 13 11 10 15 15 C 1.38840 * 119.99004 * 213.53424 * 14 13 11 16 16 C 1.38118 * 120.04137 * 180.25002 * 15 14 13 17 17 C 1.38798 * 120.01726 * 359.50021 * 16 15 14 18 18 N 1.40087 * 120.00958 * 180.27309 * 17 16 15 19 19 C 1.47013 * 111.00166 * 63.63116 * 18 17 16 20 20 C 1.53098 * 109.26024 * 177.60763 * 19 18 17 21 21 O 1.43013 * 109.25928 * 56.84968 * 20 19 18 22 22 C 1.43016 * 113.73623 * 301.33058 * 21 20 19 23 23 C 1.47017 * 111.00050 * 299.99768 * 18 17 16 24 24 C 1.39050 * 119.98079 * 0.24688 * 17 16 15 25 25 F 1.35100 * 120.02541 * 180.02562 * 24 17 16 26 26 C 1.38246 * 119.95636 * 0.02562 * 24 17 16 27 27 H 0.97011 * 119.99898 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46965 * 60.00453 * 9 7 2 29 29 H 1.09002 * 109.47387 * 300.00217 * 9 7 2 30 30 H 0.97003 * 119.99613 * 0.02562 * 10 9 7 31 31 H 0.97002 * 120.00640 * 5.32033 * 13 11 10 32 32 H 1.07996 * 119.97867 * 0.02562 * 15 14 13 33 33 H 1.08004 * 119.98949 * 179.76552 * 16 15 14 34 34 H 1.08998 * 109.50917 * 297.54816 * 19 18 17 35 35 H 1.09009 * 109.50673 * 57.67162 * 19 18 17 36 36 H 1.09000 * 109.50581 * 296.91313 * 20 19 18 37 37 H 1.09002 * 109.50846 * 176.78995 * 20 19 18 38 38 H 1.09001 * 109.50826 * 298.73151 * 22 21 20 39 39 H 1.08996 * 109.54396 * 178.62464 * 22 21 20 40 40 H 1.09001 * 109.50416 * 302.32793 * 23 18 17 41 41 H 1.08999 * 109.50553 * 62.45825 * 23 18 17 42 42 H 1.08006 * 120.00794 * 179.97438 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0018 11 6 1.7535 -4.8833 -0.0015 12 8 0.5580 -5.1055 -0.0006 13 7 2.6293 -5.9078 -0.0021 14 6 2.1659 -7.2261 -0.1144 15 6 2.8335 -8.2543 0.5374 16 6 2.3808 -9.5542 0.4233 17 6 1.2519 -9.8323 -0.3347 18 7 0.7896 -11.1500 -0.4456 19 6 0.3652 -11.6713 0.8618 20 6 -0.1869 -13.0884 0.6855 21 8 0.8103 -13.9103 0.0728 22 6 1.2462 -13.4322 -1.2027 23 6 1.8129 -12.0186 -1.0455 24 6 0.5795 -8.8025 -0.9835 25 9 -0.5198 -9.0721 -1.7211 26 6 1.0367 -7.5025 -0.8733 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5567 -0.8904 29 1 0.6245 -2.5571 0.8897 30 1 3.1565 -3.4354 -0.0021 31 1 3.5803 -5.7330 0.0751 32 1 3.7094 -8.0380 1.1309 33 1 2.9031 -10.3539 0.9275 34 1 1.2191 -11.6950 1.5389 35 1 -0.4107 -11.0273 1.2760 36 1 -1.0730 -13.0575 0.0515 37 1 -0.4499 -13.5004 1.6597 38 1 0.4018 -13.4113 -1.8916 39 1 2.0195 -14.0927 -1.5948 40 1 2.0938 -11.6282 -2.0236 41 1 2.6899 -12.0479 -0.3989 42 1 0.5153 -6.7020 -1.3772 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785772070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:31 Heat of formation + Delta-G solvation = -77.298193 kcal Electronic energy + Delta-G solvation = -26593.670240 eV Core-core repulsion = 22488.630440 eV Total energy + Delta-G solvation = -4105.039800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.69066 -40.64595 -39.91128 -38.32230 -36.12436 -34.32786 -33.86685 -32.37624 -31.54085 -30.67149 -29.53152 -27.40000 -26.09989 -24.34071 -23.58574 -22.80996 -21.90459 -20.78404 -20.26749 -18.45277 -18.12527 -17.54934 -16.50162 -16.45846 -15.99961 -15.68797 -15.66677 -15.50351 -15.26617 -15.04523 -14.85592 -14.79234 -14.36452 -14.09898 -13.86123 -13.44550 -13.12654 -12.88685 -12.63077 -12.31423 -12.06255 -12.02413 -11.84094 -11.74430 -11.68400 -11.02802 -10.95552 -10.93407 -10.37582 -10.14445 -10.07160 -9.63383 -9.46279 -8.86682 -8.82486 -8.81923 -8.22320 -7.85690 -6.22291 -4.29826 1.00363 1.14053 2.93287 3.20638 3.27106 3.29036 3.30952 3.31837 3.54355 3.79220 4.23252 4.29580 4.53421 4.56474 4.69641 4.79366 4.82612 4.83263 4.86259 5.01777 5.14072 5.17975 5.21365 5.29866 5.40329 5.43626 5.46809 5.62405 5.72688 5.87368 6.09373 6.13092 6.44550 6.48040 6.77091 6.77374 6.89919 7.12001 7.28822 7.41015 7.44604 7.72338 7.91388 8.58346 8.74647 9.06366 9.37030 10.87757 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.039522 B = 0.002127 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.292596 B =13161.439740 C =13447.520305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.265 3.735 10 N -0.719 5.719 11 C 0.689 3.311 12 O -0.578 6.578 13 N -0.695 5.695 14 C 0.216 3.784 15 C -0.158 4.158 16 C -0.097 4.097 17 C 0.014 3.986 18 N -0.492 5.492 19 C 0.022 3.978 20 C 0.064 3.936 21 O -0.386 6.386 22 C 0.064 3.936 23 C 0.022 3.978 24 C 0.151 3.849 25 F -0.126 7.126 26 C -0.157 4.157 27 H 0.267 0.733 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.389 0.611 31 H 0.407 0.593 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.027 -24.889 -0.097 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.144 3.856 10 N -0.370 5.370 11 C 0.389 3.611 12 O -0.456 6.456 13 N -0.342 5.342 14 C 0.119 3.881 15 C -0.180 4.180 16 C -0.117 4.117 17 C -0.081 4.081 18 N -0.214 5.214 19 C -0.105 4.105 20 C -0.013 4.013 21 O -0.305 6.305 22 C -0.013 4.013 23 C -0.105 4.105 24 C 0.130 3.870 25 F -0.104 7.104 26 C -0.179 4.179 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.222 0.778 31 H 0.242 0.758 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.066 0.934 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.339 -24.982 -0.357 25.549 hybrid contribution 1.752 1.483 0.377 2.326 sum 7.091 -23.499 0.020 24.546 Atomic orbital electron populations 1.69976 1.06100 1.27434 1.48566 1.24947 0.94943 0.99474 0.94635 0.86386 0.79563 0.82528 0.78250 1.20420 1.20961 1.19767 1.21187 0.93286 0.90281 1.53609 0.91850 1.19090 0.87694 0.80833 0.97947 1.45806 1.11251 1.04074 1.75900 1.16186 0.85128 0.81091 0.78721 1.90924 1.13777 1.83658 1.57205 1.42954 1.10224 1.03493 1.77564 1.17245 0.94030 0.83521 0.93315 1.20757 1.03178 0.91841 1.02218 1.21123 0.95854 0.96588 0.98179 1.18555 0.96942 0.89633 1.02985 1.59740 1.38554 0.99416 1.23688 1.22888 1.01004 0.97098 0.89517 1.22696 0.90913 0.88930 0.98771 1.87979 1.58421 1.50246 1.33835 1.22685 0.99621 0.93372 0.85658 1.22880 0.93107 0.93668 1.00825 1.17250 0.84857 0.91863 0.93040 1.91500 1.50330 1.94481 1.74132 1.21197 0.99213 0.95644 1.01847 0.92341 0.95379 0.95411 0.77798 0.75790 0.85073 0.85323 0.93333 0.89221 0.91983 0.88178 0.92028 0.88242 0.89334 0.93357 0.82697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.60 13.29 55.43 0.74 -24.86 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.43 29.54 -169.99 -5.02 15.41 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 7 C -0.55 -14.37 9.28 -34.44 -0.32 -14.69 16 8 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 9 C 0.27 6.82 5.43 -5.19 -0.03 6.79 16 10 N -0.72 -14.42 5.55 -66.41 -0.37 -14.79 16 11 C 0.69 13.36 8.30 -86.92 -0.72 12.64 16 12 O -0.58 -13.64 14.03 5.28 0.07 -13.56 16 13 N -0.69 -9.80 5.36 -14.18 -0.08 -9.87 16 14 C 0.22 3.00 6.28 -83.59 -0.53 2.47 16 15 C -0.16 -1.70 9.96 -39.40 -0.39 -2.09 16 16 C -0.10 -0.99 8.62 -39.42 -0.34 -1.33 16 17 C 0.01 0.17 4.75 -83.58 -0.40 -0.22 16 18 N -0.49 -5.27 4.54 -170.66 -0.77 -6.05 16 19 C 0.02 0.20 5.41 -3.71 -0.02 0.18 16 20 C 0.06 0.52 7.01 37.21 0.26 0.78 16 21 O -0.39 -3.65 10.83 -35.23 -0.38 -4.03 16 22 C 0.06 0.49 7.01 37.21 0.26 0.76 16 23 C 0.02 0.19 5.37 -3.71 -0.02 0.17 16 24 C 0.15 2.19 7.31 -39.28 -0.29 1.90 16 25 F -0.13 -1.97 17.07 2.25 0.04 -1.93 16 26 C -0.16 -2.47 8.63 -39.36 -0.34 -2.81 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.39 6.50 8.34 -40.82 -0.34 6.16 16 31 H 0.41 4.16 8.84 -40.82 -0.36 3.80 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.13 1.05 7.04 -52.48 -0.37 0.69 16 34 H 0.05 0.43 7.41 -51.93 -0.38 0.04 16 35 H 0.09 0.86 8.14 -51.92 -0.42 0.43 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.39 7.22 -51.93 -0.37 0.02 16 42 H 0.16 2.84 6.41 -52.48 -0.34 2.50 16 LS Contribution 354.66 15.07 5.34 5.34 Total: -1.00 -32.72 354.66 -8.90 -41.62 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.50 Total: 6.54 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -2.97 Total: 6.19 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.48 Total: -55.58 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.31 Total: -17.59 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.72 -8.90 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785772070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.682 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds